Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47597 * 2 1 4 4 C 1.50710 * 109.47006 * 239.99998 * 2 1 3 5 5 H 1.08003 * 119.99531 * 240.00469 * 4 2 1 6 6 C 1.37875 * 119.99797 * 59.99918 * 4 2 1 7 7 N 1.31509 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99733 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47273 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47212 * 300.00506 * 8 6 4 11 11 H 1.48507 * 109.47006 * 60.00583 * 8 6 4 12 12 N 1.46501 * 109.47062 * 120.00360 * 2 1 3 13 13 C 1.46500 * 119.99874 * 59.99323 * 12 2 1 14 14 C 1.34773 * 119.99772 * 239.99565 * 12 2 1 15 15 O 1.21589 * 120.00129 * 0.02562 * 14 12 2 16 16 N 1.34784 * 120.00022 * 179.97438 * 14 12 2 17 17 C 1.40067 * 120.00101 * 175.41543 * 16 14 12 18 18 C 1.38874 * 120.00286 * 214.82385 * 17 16 14 19 19 C 1.38025 * 120.00390 * 179.76641 * 18 17 16 20 20 C 1.38884 * 119.99824 * 0.51740 * 19 18 17 21 21 N 1.40138 * 120.00130 * 179.76704 * 20 19 18 22 22 N 1.39876 * 125.47908 * 144.66733 * 21 20 19 23 23 C 1.30307 * 110.09376 * 179.83831 * 22 21 20 24 24 C 1.45939 * 107.81924 * 0.40968 * 23 22 21 25 25 C 1.39942 * 134.02325 * 179.71988 * 24 23 22 26 26 C 1.36480 * 119.62923 * 180.02562 * 25 24 23 27 27 C 1.38957 * 120.62705 * 359.97438 * 26 25 24 28 28 C 1.36620 * 120.81452 * 359.97438 * 27 26 25 29 29 C 1.37263 * 125.47737 * 324.96568 * 21 20 19 30 30 C 1.38886 * 119.99693 * 359.73844 * 20 19 18 31 31 C 1.38027 * 120.00120 * 0.02562 * 30 20 19 32 32 H 1.09003 * 109.46760 * 300.00279 * 1 2 3 33 33 H 1.09005 * 109.46981 * 59.99879 * 1 2 3 34 34 H 1.08992 * 109.47597 * 180.02562 * 1 2 3 35 35 H 0.97000 * 119.99849 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46651 * 90.00884 * 13 12 2 37 37 H 1.09003 * 109.46726 * 209.99793 * 13 12 2 38 38 H 1.08994 * 109.47583 * 330.00078 * 13 12 2 39 39 H 0.96998 * 119.99791 * 355.42260 * 16 14 12 40 40 H 1.08004 * 119.99238 * 0.02562 * 18 17 16 41 41 H 1.07997 * 120.00073 * 180.27186 * 19 18 17 42 42 H 1.07999 * 126.08668 * 180.11961 * 23 22 21 43 43 H 1.07995 * 120.18390 * 0.05259 * 25 24 23 44 44 H 1.08004 * 119.68628 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.59434 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.07767 * 180.02562 * 28 27 26 47 47 H 1.08008 * 120.00135 * 180.02562 * 30 20 19 48 48 H 1.07998 * 120.00307 * 179.97438 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8278 -0.4193 -5.2205 10 1 3.8075 -1.1191 -4.0077 11 1 1.8279 -2.5199 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 3.0866 1.1284 1.8911 16 7 3.2421 -0.6710 3.1840 17 6 4.1248 -0.0216 4.0564 18 6 5.1159 -0.7449 4.7069 19 6 5.9887 -0.1041 5.5629 20 6 5.8691 1.2621 5.7819 21 7 6.7522 1.9118 6.6548 22 7 7.2437 3.2114 6.4935 23 6 8.0388 3.5149 7.4802 24 6 8.1094 2.3593 8.3686 25 6 8.7896 2.0898 9.5616 26 6 8.6405 0.8739 10.1634 27 6 7.8198 -0.0974 9.6032 28 6 7.1448 0.1427 8.4399 29 6 7.2785 1.3731 7.8023 30 6 4.8745 1.9845 5.1354 31 6 4.0048 1.3445 4.2757 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 0.7095 1.1618 -3.4844 36 1 2.4156 -2.7378 0.9716 37 1 1.6237 -2.2852 2.5001 38 1 0.6903 -2.3002 0.9846 39 1 2.9539 -1.5779 3.3719 40 1 5.2063 -1.8081 4.5398 41 1 6.7622 -0.6659 6.0654 42 1 8.5573 4.4529 7.6140 43 1 9.4286 2.8398 10.0036 44 1 9.1647 0.6651 11.0844 45 1 7.7142 -1.0540 10.0934 46 1 6.5097 -0.6207 8.0152 47 1 4.7817 3.0470 5.3054 48 1 3.2311 1.9062 3.7733 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096502449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = 111.981059 kcal Electronic energy + Delta-G solvation = -31078.267809 eV Core-core repulsion = 26907.477709 eV Total energy + Delta-G solvation = -4170.790100 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.76241 -40.32703 -38.70093 -37.47602 -35.72291 -34.73130 -33.27685 -32.54183 -31.20468 -30.60121 -30.08122 -29.38995 -27.74198 -26.23813 -25.23480 -23.62572 -23.43803 -23.17278 -22.04201 -21.29780 -20.62049 -19.23710 -18.17734 -17.91565 -17.14590 -17.03522 -16.30411 -15.72186 -15.65473 -15.35611 -15.21300 -14.96822 -14.57491 -14.41250 -14.13944 -14.01309 -13.74262 -13.44829 -13.34710 -12.94657 -12.78890 -12.65667 -12.62983 -12.24176 -12.19696 -11.63710 -11.58142 -11.49988 -11.32929 -11.14483 -11.06831 -10.85689 -10.74899 -10.67423 -10.30400 -10.18663 -10.00342 -9.42466 -9.20403 -9.01781 -8.98995 -8.64492 -8.45402 -7.76929 -7.45855 -6.09481 -4.17443 0.53566 0.94116 1.31528 1.44824 2.09568 2.27951 3.07706 3.26566 3.32094 3.34513 3.44328 3.55263 3.90675 4.16364 4.31572 4.32460 4.45992 4.50286 4.63302 4.77660 4.84094 4.94019 5.02754 5.21496 5.24505 5.29081 5.36712 5.44687 5.48418 5.58487 5.66007 5.88752 5.91018 5.96365 6.01288 6.11872 6.15815 6.18202 6.30750 6.35466 6.52818 6.54146 6.68182 6.75780 6.90580 6.95683 7.09189 7.16769 7.37999 7.40858 7.65408 7.76259 8.01803 8.17340 8.55693 8.82590 9.12214 9.49253 10.95829 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.001780 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.574306 B =15730.355386 C =16087.665428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.602 5.602 13 C 0.087 3.913 14 C 0.696 3.304 15 O -0.577 6.577 16 N -0.695 5.695 17 C 0.181 3.819 18 C -0.133 4.133 19 C -0.114 4.114 20 C 0.127 3.873 21 N -0.346 5.346 22 N -0.242 5.242 23 C 0.073 3.927 24 C -0.180 4.180 25 C -0.040 4.040 26 C -0.160 4.160 27 C -0.072 4.072 28 C -0.137 4.137 29 C 0.128 3.872 30 C -0.092 4.092 31 C -0.101 4.101 32 H 0.012 0.988 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.404 0.596 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.200 0.800 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.408 -3.438 25.586 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.336 5.336 13 C -0.057 4.057 14 C 0.398 3.602 15 O -0.454 6.454 16 N -0.344 5.344 17 C 0.084 3.916 18 C -0.155 4.155 19 C -0.135 4.135 20 C 0.036 3.964 21 N -0.126 5.126 22 N -0.051 5.051 23 C -0.124 4.124 24 C -0.188 4.188 25 C -0.060 4.060 26 C -0.180 4.180 27 C -0.092 4.092 28 C -0.159 4.159 29 C 0.015 3.985 30 C -0.113 4.113 31 C -0.122 4.122 32 H 0.031 0.969 33 H 0.114 0.886 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.241 0.759 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.217 0.783 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.820 -2.112 23.967 26.381 hybrid contribution 0.576 -1.333 -0.194 1.465 sum 11.396 -3.445 23.773 26.587 Atomic orbital electron populations 1.22121 0.98163 0.99377 1.00967 1.18924 0.90673 0.94352 0.78868 0.91635 1.21272 1.31942 1.13064 0.90254 0.92366 1.24884 0.94950 0.94997 0.98957 1.69860 1.36257 1.22485 1.23930 0.86538 0.79252 0.79513 0.81962 1.21148 1.20270 1.20258 1.47626 1.50656 1.11587 1.23779 1.21517 1.02243 0.83484 0.98506 1.15990 0.79700 0.85108 0.79404 1.90874 1.62367 1.15235 1.76956 1.43012 1.48769 1.18713 1.23945 1.17640 0.90508 0.92328 0.91158 1.20658 0.94581 1.00403 0.99859 1.20651 1.00344 0.92416 1.00118 1.17335 0.91869 0.91249 0.95993 1.45450 1.38685 1.10217 1.18287 1.76822 1.12066 0.94480 1.21779 1.25226 0.97487 0.98711 0.91008 1.19943 1.04655 0.94683 0.99519 1.20351 0.96546 0.96884 0.92265 1.20694 1.01909 0.93962 1.01427 1.20767 0.94982 0.99307 0.94184 1.20032 1.03884 0.94715 0.97254 1.18868 0.95910 0.95610 0.88132 1.20862 0.93142 1.00389 0.96894 1.21359 1.00442 0.93779 0.96581 0.96901 0.88639 0.95099 0.92578 0.93139 0.93684 0.90292 0.75913 0.84891 0.85243 0.78302 0.85339 0.85575 0.85252 0.85291 0.84975 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 2 C 0.27 6.83 2.64 -69.08 -0.18 6.65 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.07 8.37 -34.44 -0.29 -14.36 16 5 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 N -0.60 -12.49 2.75 -181.00 -0.50 -12.99 16 13 C 0.09 1.36 9.48 59.85 0.57 1.93 16 14 C 0.70 14.28 8.13 -86.92 -0.71 13.58 16 15 O -0.58 -14.06 13.10 5.29 0.07 -13.99 16 16 N -0.70 -10.72 5.22 -14.19 -0.07 -10.79 16 17 C 0.18 2.70 6.30 -83.62 -0.53 2.18 16 18 C -0.13 -1.61 9.96 -39.42 -0.39 -2.00 16 19 C -0.11 -1.37 8.75 -39.42 -0.34 -1.72 16 20 C 0.13 1.78 6.38 -83.58 -0.53 1.25 16 21 N -0.35 -4.72 3.77 -8.36 -0.03 -4.75 16 22 N -0.24 -3.26 12.14 31.88 0.39 -2.87 16 23 C 0.07 0.74 12.28 -15.12 -0.19 0.55 16 24 C -0.18 -1.85 6.37 -105.19 -0.67 -2.52 16 25 C -0.04 -0.30 10.07 -39.58 -0.40 -0.70 16 26 C -0.16 -1.09 9.97 -39.95 -0.40 -1.49 16 27 C -0.07 -0.52 9.96 -39.90 -0.40 -0.92 16 28 C -0.14 -1.29 9.06 -39.80 -0.36 -1.65 16 29 C 0.13 1.50 6.59 -84.08 -0.55 0.95 16 30 C -0.09 -1.37 9.73 -39.42 -0.38 -1.76 16 31 C -0.10 -1.62 8.69 -39.42 -0.34 -1.97 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 34 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.52 6.30 -51.93 -0.33 0.20 16 38 H 0.08 1.26 6.43 -51.93 -0.33 0.92 16 39 H 0.40 4.82 6.52 -40.82 -0.27 4.55 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 42 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.13 1.05 6.46 -52.49 -0.34 0.72 16 47 H 0.13 1.91 8.05 -52.48 -0.42 1.49 16 48 H 0.15 2.79 6.22 -52.49 -0.33 2.46 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -33.73 394.57 -10.31 -44.05 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.86 Total: 7.17 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -5.86 Total: -3.45 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.41 Total: -55.68 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.07 Total: -13.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.73 -10.31 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096502449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.031 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds