Wall clock time and date at job start Tue Mar 31 2020 05:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47597 * 2 1 4 4 C 1.50710 * 109.47006 * 239.99998 * 2 1 3 5 5 H 1.08003 * 119.99531 * 240.00469 * 4 2 1 6 6 C 1.37875 * 119.99797 * 59.99918 * 4 2 1 7 7 N 1.31509 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99733 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47273 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47212 * 300.00506 * 8 6 4 11 11 H 1.48507 * 109.47006 * 60.00583 * 8 6 4 12 12 N 1.46501 * 109.47062 * 120.00360 * 2 1 3 13 13 C 1.46500 * 119.99874 * 59.99323 * 12 2 1 14 14 C 1.34773 * 119.99772 * 239.99565 * 12 2 1 15 15 O 1.21589 * 120.00129 * 0.02562 * 14 12 2 16 16 N 1.34784 * 120.00022 * 179.97438 * 14 12 2 17 17 C 1.40067 * 120.00101 * 175.41543 * 16 14 12 18 18 C 1.38874 * 120.00286 * 214.82385 * 17 16 14 19 19 C 1.38025 * 120.00390 * 179.76641 * 18 17 16 20 20 C 1.38884 * 119.99824 * 0.51740 * 19 18 17 21 21 N 1.40138 * 120.00130 * 179.76704 * 20 19 18 22 22 N 1.39876 * 125.47908 * 144.66733 * 21 20 19 23 23 C 1.30307 * 110.09376 * 179.83831 * 22 21 20 24 24 C 1.45939 * 107.81924 * 0.40968 * 23 22 21 25 25 C 1.39942 * 134.02325 * 179.71988 * 24 23 22 26 26 C 1.36480 * 119.62923 * 180.02562 * 25 24 23 27 27 C 1.38957 * 120.62705 * 359.97438 * 26 25 24 28 28 C 1.36620 * 120.81452 * 359.97438 * 27 26 25 29 29 C 1.37263 * 125.47737 * 324.96568 * 21 20 19 30 30 C 1.38886 * 119.99693 * 359.73844 * 20 19 18 31 31 C 1.38027 * 120.00120 * 0.02562 * 30 20 19 32 32 H 1.09003 * 109.46760 * 300.00279 * 1 2 3 33 33 H 1.09005 * 109.46981 * 59.99879 * 1 2 3 34 34 H 1.08992 * 109.47597 * 180.02562 * 1 2 3 35 35 H 0.97000 * 119.99849 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46651 * 90.00884 * 13 12 2 37 37 H 1.09003 * 109.46726 * 209.99793 * 13 12 2 38 38 H 1.08994 * 109.47583 * 330.00078 * 13 12 2 39 39 H 0.96998 * 119.99791 * 355.42260 * 16 14 12 40 40 H 1.08004 * 119.99238 * 0.02562 * 18 17 16 41 41 H 1.07997 * 120.00073 * 180.27186 * 19 18 17 42 42 H 1.07999 * 126.08668 * 180.11961 * 23 22 21 43 43 H 1.07995 * 120.18390 * 0.05259 * 25 24 23 44 44 H 1.08004 * 119.68628 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.59434 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.07767 * 180.02562 * 28 27 26 47 47 H 1.08008 * 120.00135 * 180.02562 * 30 20 19 48 48 H 1.07998 * 120.00307 * 179.97438 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8278 -0.4193 -5.2205 10 1 3.8075 -1.1191 -4.0077 11 1 1.8279 -2.5199 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 3.0866 1.1284 1.8911 16 7 3.2421 -0.6710 3.1840 17 6 4.1248 -0.0216 4.0564 18 6 5.1159 -0.7449 4.7069 19 6 5.9887 -0.1041 5.5629 20 6 5.8691 1.2621 5.7819 21 7 6.7522 1.9118 6.6548 22 7 7.2437 3.2114 6.4935 23 6 8.0388 3.5149 7.4802 24 6 8.1094 2.3593 8.3686 25 6 8.7896 2.0898 9.5616 26 6 8.6405 0.8739 10.1634 27 6 7.8198 -0.0974 9.6032 28 6 7.1448 0.1427 8.4399 29 6 7.2785 1.3731 7.8023 30 6 4.8745 1.9845 5.1354 31 6 4.0048 1.3445 4.2757 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 0.7095 1.1618 -3.4844 36 1 2.4156 -2.7378 0.9716 37 1 1.6237 -2.2852 2.5001 38 1 0.6903 -2.3002 0.9846 39 1 2.9539 -1.5779 3.3719 40 1 5.2063 -1.8081 4.5398 41 1 6.7622 -0.6659 6.0654 42 1 8.5573 4.4529 7.6140 43 1 9.4286 2.8398 10.0036 44 1 9.1647 0.6651 11.0844 45 1 7.7142 -1.0540 10.0934 46 1 6.5097 -0.6207 8.0152 47 1 4.7817 3.0470 5.3054 48 1 3.2311 1.9062 3.7733 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096502449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:18 Heat of formation + Delta-G solvation = 92.804603 kcal Electronic energy + Delta-G solvation = -31079.099363 eV Core-core repulsion = 26907.477709 eV Total energy + Delta-G solvation = -4171.621654 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.55437 -41.70663 -39.91270 -38.18959 -37.33500 -36.12467 -34.86846 -33.83077 -32.25262 -31.57550 -31.00778 -30.74791 -28.82096 -27.65668 -27.27153 -24.75102 -24.30358 -24.00321 -23.15872 -22.49284 -21.59673 -20.79317 -19.42477 -18.89775 -18.61661 -18.07748 -17.85620 -17.04720 -16.79386 -16.36621 -16.30069 -16.08090 -16.02465 -15.51567 -15.24971 -15.01649 -14.86272 -14.55577 -14.41850 -14.36393 -14.12760 -13.87972 -13.84665 -13.47630 -13.07646 -13.00880 -12.91707 -12.82149 -12.72597 -12.61173 -12.48424 -12.18329 -12.12362 -12.01358 -11.92342 -11.64528 -11.21059 -11.12273 -10.96756 -10.52211 -10.10241 -9.71320 -9.66591 -9.29378 -8.50243 -8.14372 -6.30753 -0.27778 0.15971 0.24236 0.66029 1.25501 1.40998 1.43686 1.50363 1.50777 1.68278 2.11183 2.41286 2.66832 2.87296 3.02949 3.13606 3.43722 3.60906 3.76225 3.82273 3.88864 4.07692 4.19086 4.27253 4.32433 4.38563 4.46789 4.51378 4.61041 4.63880 4.74525 4.80370 4.88748 4.91309 4.98479 5.00738 5.04611 5.08183 5.19732 5.21349 5.34180 5.42813 5.44665 5.53581 5.56181 5.60932 5.66012 5.78050 5.96814 5.97947 6.14042 6.20474 6.22795 6.56675 6.76307 7.05103 7.35989 7.59186 8.89608 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.001780 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.574306 B =15730.355386 C =16087.665428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.277 3.723 3 H 0.009 0.991 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.285 1.285 10 H -0.280 1.280 11 H -0.260 1.260 12 N -0.610 5.610 13 C 0.081 3.919 14 C 0.690 3.310 15 O -0.627 6.627 16 N -0.672 5.672 17 C 0.156 3.844 18 C -0.108 4.108 19 C -0.109 4.109 20 C 0.130 3.870 21 N -0.367 5.367 22 N -0.296 5.296 23 C 0.087 3.913 24 C -0.199 4.199 25 C -0.039 4.039 26 C -0.159 4.159 27 C -0.063 4.063 28 C -0.157 4.157 29 C 0.101 3.899 30 C -0.109 4.109 31 C -0.117 4.117 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.423 0.577 40 H 0.173 0.827 41 H 0.157 0.843 42 H 0.236 0.764 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.137 0.863 47 H 0.121 0.879 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 -6.781 28.469 32.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.175 3.825 3 H 0.027 0.973 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.210 1.210 10 H -0.206 1.206 11 H -0.185 1.185 12 N -0.344 5.344 13 C -0.061 4.061 14 C 0.392 3.608 15 O -0.508 6.508 16 N -0.323 5.323 17 C 0.059 3.941 18 C -0.129 4.129 19 C -0.130 4.130 20 C 0.037 3.963 21 N -0.148 5.148 22 N -0.105 5.105 23 C -0.110 4.110 24 C -0.207 4.207 25 C -0.060 4.060 26 C -0.178 4.178 27 C -0.083 4.083 28 C -0.179 4.179 29 C -0.010 4.010 30 C -0.129 4.129 31 C -0.138 4.138 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.264 0.736 40 H 0.191 0.809 41 H 0.174 0.826 42 H 0.253 0.747 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.178 0.822 46 H 0.155 0.845 47 H 0.139 0.861 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.098 -5.521 26.923 30.445 hybrid contribution 0.037 -0.226 -0.812 0.843 sum 13.135 -5.748 26.111 29.789 Atomic orbital electron populations 1.21896 0.96956 1.00295 0.99992 1.18484 0.91513 0.91960 0.80570 0.97259 1.21538 1.31888 1.13086 0.91048 0.92097 1.25736 0.95148 0.95692 1.02024 1.70014 1.37291 1.23798 1.24475 0.85509 0.78248 0.79074 0.78155 1.21002 1.20552 1.18490 1.47462 1.50834 1.13443 1.22628 1.21801 1.02261 0.80353 1.01681 1.16179 0.79564 0.84629 0.80393 1.90851 1.64030 1.17666 1.78265 1.42574 1.48336 1.19123 1.22277 1.17788 0.91974 0.92023 0.92287 1.20980 0.92356 1.01904 0.97697 1.20952 1.00633 0.91666 0.99736 1.17544 0.91228 0.92138 0.95367 1.45464 1.39552 1.10608 1.19214 1.76774 1.14359 0.95277 1.24134 1.25945 0.95602 0.99816 0.89633 1.20296 1.05325 0.94405 1.00648 1.20765 0.96061 0.98061 0.91071 1.21163 1.01178 0.93278 1.02151 1.21216 0.93428 1.00623 0.93034 1.20291 1.05047 0.94235 0.98288 1.19360 0.96637 0.97064 0.87962 1.20741 0.94110 1.00143 0.97951 1.21127 1.00467 0.94793 0.97422 0.96138 0.91300 0.93050 0.92654 0.92314 0.89171 0.90427 0.73619 0.80945 0.82589 0.74746 0.82410 0.82399 0.82229 0.84541 0.86095 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.95 71.98 0.64 -5.72 16 2 C 0.28 14.48 2.64 44.25 0.12 14.59 16 3 H 0.01 0.59 6.90 -2.39 -0.02 0.58 16 4 C -0.54 -29.20 8.37 25.60 0.21 -28.98 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 8 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 12 N -0.61 -25.62 2.75 -844.83 -2.33 -27.95 16 13 C 0.08 2.40 9.48 127.77 1.21 3.61 16 14 C 0.69 29.30 8.13 179.05 1.45 30.75 16 15 O -0.63 -32.95 13.10 -3.99 -0.05 -33.00 16 16 N -0.67 -20.42 5.22 -317.05 -1.65 -22.07 16 17 C 0.16 4.68 6.30 38.13 0.24 4.92 16 18 C -0.11 -2.39 9.96 22.37 0.22 -2.16 16 19 C -0.11 -2.47 8.75 22.37 0.20 -2.27 16 20 C 0.13 3.73 6.38 38.12 0.24 3.97 16 21 N -0.37 -10.23 3.77 -180.37 -0.68 -10.91 16 22 N -0.30 -8.29 12.14 -53.05 -0.64 -8.94 16 23 C 0.09 1.71 12.28 86.91 1.07 2.78 16 24 C -0.20 -3.78 6.37 -20.23 -0.13 -3.91 16 25 C -0.04 -0.47 10.07 22.27 0.22 -0.24 16 26 C -0.16 -1.50 9.97 22.03 0.22 -1.28 16 27 C -0.06 -0.68 9.96 22.06 0.22 -0.46 16 28 C -0.16 -2.60 9.06 22.13 0.20 -2.40 16 29 C 0.10 2.29 6.59 39.17 0.26 2.55 16 30 C -0.11 -3.54 9.73 22.37 0.22 -3.32 16 31 C -0.12 -4.10 8.69 22.37 0.19 -3.91 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 3.69 6.07 -2.38 -0.01 3.67 16 34 H 0.05 2.19 6.66 -2.39 -0.02 2.18 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.81 6.30 -2.39 -0.02 1.79 16 38 H 0.08 2.32 6.43 -2.39 -0.02 2.31 16 39 H 0.42 9.05 6.52 -92.71 -0.60 8.45 16 40 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.16 2.70 6.30 -2.91 -0.02 2.68 16 42 H 0.24 2.31 8.06 -2.91 -0.02 2.28 16 43 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 44 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 45 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 46 H 0.14 1.91 6.46 -2.91 -0.02 1.89 16 47 H 0.12 4.02 8.05 -2.91 -0.02 4.00 16 48 H 0.12 4.95 6.22 -2.91 -0.02 4.93 16 Total: -1.00 -80.91 394.57 4.79 -76.12 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.41 Total: 24.68 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 7.47 Total: 9.70 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.06 Total: -122.81 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.05 Total: -33.00 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -80.91 4.79 -76.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096502449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.923 kcal (2) G-P(sol) polarization free energy of solvation -80.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds