Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.36656 * 119.76893 * 2 1 4 4 C 1.39687 * 119.72574 * 179.97438 * 3 2 1 5 5 C 1.46243 * 134.18736 * 180.36687 * 4 3 2 6 6 C 1.35810 * 106.08564 * 180.02562 * 5 4 3 7 7 C 1.46980 * 125.13311 * 179.85797 * 6 5 4 8 8 O 1.21653 * 119.99609 * 5.68859 * 7 6 5 9 9 N 1.34770 * 120.00167 * 185.68613 * 7 6 5 10 10 C 1.46504 * 119.99820 * 5.52188 * 9 7 6 11 11 C 1.46504 * 120.00305 * 185.52319 * 9 7 6 12 12 H 1.08997 * 109.46508 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.46989 * 239.99771 * 11 9 7 14 14 C 1.50700 * 109.47131 * 119.99704 * 11 9 7 15 15 H 1.08003 * 120.00205 * 35.01111 * 14 11 9 16 16 C 1.37871 * 120.00151 * 215.01062 * 14 11 9 17 17 N 1.31513 * 120.00137 * 184.95307 * 16 14 11 18 18 Si 1.86804 * 119.99989 * 4.94633 * 16 14 11 19 19 H 1.48503 * 109.47098 * 84.89838 * 18 16 14 20 20 H 1.48493 * 109.47197 * 204.90156 * 18 16 14 21 21 H 1.48503 * 109.46975 * 324.90266 * 18 16 14 22 22 O 1.34955 * 109.73562 * 359.60368 * 6 5 4 23 23 C 1.34727 * 110.86094 * 0.25965 * 22 6 5 24 24 C 1.39062 * 133.24685 * 180.02562 * 23 22 6 25 25 Br 1.89100 * 120.08206 * 359.97201 * 24 23 22 26 26 C 1.37915 * 119.83926 * 179.97438 * 24 23 22 27 27 H 1.08999 * 109.46420 * 89.99898 * 1 2 3 28 28 H 1.08999 * 109.46810 * 209.99758 * 1 2 3 29 29 H 1.09000 * 109.46829 * 329.99862 * 1 2 3 30 30 H 1.07992 * 120.13679 * 0.02681 * 3 2 1 31 31 H 1.07995 * 126.96239 * 359.95886 * 5 4 3 32 32 H 1.08998 * 109.47397 * 275.73287 * 10 9 7 33 33 H 1.08997 * 109.47520 * 35.73675 * 10 9 7 34 34 H 1.09003 * 109.47148 * 155.73794 * 10 9 7 35 35 H 1.08998 * 109.46810 * 174.91278 * 13 11 9 36 36 H 1.09001 * 109.46935 * 54.92041 * 13 11 9 37 37 H 1.08991 * 109.47459 * 294.92035 * 13 11 9 38 38 H 0.97004 * 119.99978 * 179.97438 * 17 16 14 39 39 H 1.07998 * 119.63644 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1856 1.1862 0.0000 4 6 3.5825 1.1852 0.0005 5 6 4.6026 2.2330 0.0074 6 6 5.8001 1.5924 0.0033 7 6 7.1129 2.2534 0.0048 8 8 7.1849 3.4628 0.1143 9 7 8.2369 1.5195 -0.1153 10 6 8.1479 0.0793 -0.3683 11 6 9.5479 2.1620 0.0073 12 1 9.4141 3.2276 0.1934 13 6 10.3355 1.9651 -1.2895 14 6 10.3052 1.5435 1.1539 15 1 10.1952 0.4907 1.3685 16 6 11.1387 2.3215 1.9292 17 7 11.8736 1.7649 2.8671 18 14 11.2242 4.1661 1.6472 19 1 10.1319 4.8332 2.4004 20 1 12.5356 4.6787 2.1188 21 1 11.0728 4.4528 0.1980 22 8 5.6028 0.2574 0.0035 23 6 4.2872 -0.0331 0.0018 24 6 3.5752 -1.2277 0.0017 25 35 4.4956 -2.8796 0.0033 26 6 2.1963 -1.2047 0.0003 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6441 2.1206 0.0004 31 1 4.4372 3.3002 0.0133 32 1 8.0157 -0.4481 0.5764 33 1 7.2977 -0.1234 -1.0196 34 1 9.0641 -0.2624 -0.8499 35 1 11.2728 2.5186 -1.2328 36 1 9.7475 2.3317 -2.1310 37 1 10.5472 0.9051 -1.4287 38 1 12.4602 2.3123 3.4123 39 1 1.6467 -2.1343 -0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097083152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -18.244729 kcal Electronic energy + Delta-G solvation = -24340.002566 eV Core-core repulsion = 20680.860409 eV Total energy + Delta-G solvation = -3659.142157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 365.041 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.73409 -40.82329 -39.38917 -37.44439 -34.81559 -34.40631 -33.65564 -32.56102 -31.31304 -30.17020 -27.93504 -27.89722 -27.30824 -25.53661 -22.93139 -22.76733 -22.23264 -20.66186 -19.39190 -18.76522 -18.38887 -17.72336 -17.59186 -16.44806 -16.32198 -16.11103 -15.85954 -15.15939 -15.02452 -14.59413 -14.57685 -14.46018 -14.33130 -14.14979 -14.11820 -13.37164 -13.20546 -13.16011 -13.05678 -12.99308 -12.77331 -12.58296 -12.39130 -12.10726 -12.05952 -11.84818 -11.40027 -11.35380 -11.27117 -10.96810 -10.82809 -9.74432 -9.54817 -9.27110 -8.40257 -6.46166 -0.66964 0.06896 0.46702 0.60349 1.23825 1.28049 1.33382 1.41228 1.98801 2.06825 2.25597 2.40395 2.96979 3.16044 3.45475 3.68923 3.78951 4.08412 4.09564 4.16963 4.28007 4.39645 4.40585 4.52842 4.66775 4.71230 4.71779 4.83675 4.85935 4.93853 4.96293 5.03934 5.09725 5.18002 5.27519 5.39808 5.45907 5.50533 5.63632 5.79674 6.08033 6.46320 6.59786 6.92854 7.21707 8.75146 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.003197 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.582207 B = 8754.913589 C =10001.629909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.043 4.043 4 C -0.142 4.142 5 C -0.108 4.108 6 C -0.033 4.033 7 C 0.578 3.422 8 O -0.566 6.566 9 N -0.581 5.581 10 C 0.091 3.909 11 C 0.223 3.777 12 H 0.048 0.952 13 C -0.141 4.141 14 C -0.526 4.526 15 H 0.050 0.950 16 C 0.030 3.970 17 N -0.932 5.932 18 Si 0.926 3.074 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.245 1.245 22 O -0.177 6.177 23 C 0.056 3.944 24 C -0.099 4.099 25 Br -0.038 7.038 26 C -0.043 4.043 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.165 0.835 31 H 0.185 0.815 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.270 0.730 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.065 -8.071 -9.366 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.098 4.098 3 C -0.061 4.061 4 C -0.144 4.144 5 C -0.128 4.128 6 C -0.083 4.083 7 C 0.365 3.635 8 O -0.449 6.449 9 N -0.309 5.309 10 C -0.051 4.051 11 C 0.122 3.878 12 H 0.066 0.934 13 C -0.199 4.199 14 C -0.564 4.564 15 H 0.068 0.932 16 C -0.170 4.170 17 N -0.570 5.570 18 Si 0.750 3.250 19 H -0.207 1.207 20 H -0.200 1.200 21 H -0.169 1.169 22 O -0.078 6.078 23 C 0.006 3.994 24 C -0.179 4.179 25 Br 0.048 6.952 26 C -0.063 4.063 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.183 0.817 31 H 0.202 0.798 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -25.236 -8.283 -9.180 28.102 hybrid contribution 0.718 1.046 0.515 1.369 sum -24.519 -7.237 -8.665 26.993 Atomic orbital electron populations 1.20862 0.86911 1.04643 1.03993 1.19928 0.98628 0.90971 1.00227 1.20747 0.89687 1.00508 0.95189 1.20009 0.95645 0.90744 1.07985 1.22946 0.88575 1.00929 1.00378 1.21900 0.95659 0.80823 1.09877 1.17180 0.82398 0.86030 0.77853 1.90777 1.86200 1.13814 1.54080 1.48324 1.06173 1.09961 1.66445 1.21792 1.03135 0.79047 1.01123 1.19303 0.79217 0.94273 0.95051 0.93372 1.22099 0.99667 1.02247 0.95922 1.21299 1.24950 0.96631 1.13520 0.93152 1.25659 0.94600 1.02561 0.94155 1.69990 1.26936 1.37778 1.22337 0.86067 0.77551 0.80989 0.80387 1.20684 1.19959 1.16879 1.84327 1.24215 1.23366 1.75927 1.19713 0.81990 0.95498 1.02234 1.20780 0.94542 0.88226 1.14379 1.96766 1.77207 1.23474 1.97798 1.21339 0.89305 1.00803 0.94835 0.89440 0.89766 0.89890 0.81748 0.79797 0.93526 0.89849 0.89559 0.92368 0.93091 0.91832 0.92060 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.00 71.24 0.71 0.10 16 2 C -0.10 -1.28 5.85 -20.10 -0.12 -1.40 16 3 C -0.04 -0.72 9.68 22.25 0.22 -0.50 16 4 C -0.14 -3.53 6.38 -20.24 -0.13 -3.66 16 5 C -0.11 -3.14 10.81 23.79 0.26 -2.88 16 6 C -0.03 -1.17 6.67 24.00 0.16 -1.01 16 7 C 0.58 24.97 7.64 86.54 0.66 25.63 16 8 O -0.57 -27.36 16.17 -4.20 -0.07 -27.43 16 9 N -0.58 -25.44 2.75 -831.18 -2.29 -27.72 16 10 C 0.09 3.35 8.34 127.77 1.07 4.42 16 11 C 0.22 10.81 2.29 44.24 0.10 10.91 16 12 H 0.05 2.52 4.06 -2.39 -0.01 2.51 16 13 C -0.14 -5.76 9.06 71.98 0.65 -5.10 16 14 C -0.53 -29.66 8.82 25.60 0.23 -29.44 16 15 H 0.05 3.07 7.67 -2.91 -0.02 3.05 16 16 C 0.03 1.77 5.47 84.65 0.46 2.23 16 17 N -0.93 -57.32 13.96 21.44 0.30 -57.02 16 18 Si 0.93 45.66 26.99 68.60 1.85 47.51 16 19 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.25 -11.32 6.82 99.48 0.68 -10.64 16 22 O -0.18 -5.87 7.37 -13.19 -0.10 -5.96 16 23 C 0.06 1.56 7.16 23.08 0.17 1.72 16 24 C -0.10 -2.26 6.24 22.39 0.14 -2.12 16 25 Br -0.04 -0.85 33.71 -20.37 -0.69 -1.54 16 26 C -0.04 -0.67 9.40 22.32 0.21 -0.46 16 27 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 29 H 0.08 0.34 8.08 -2.39 -0.02 0.32 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.18 4.70 8.06 -2.91 -0.02 4.67 16 32 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 33 H 0.08 2.69 5.99 -2.39 -0.01 2.68 16 34 H 0.09 2.99 6.54 -2.39 -0.02 2.98 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 2.42 6.87 -2.39 -0.02 2.41 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -71.60 348.09 4.85 -66.75 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.06 Total: 6.97 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 4.78 Total: -1.56 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -1.99 Total: -84.75 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.17 Total: -33.39 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.85 Total: 47.51 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -0.69 Total: -1.54 kcal Total: -71.60 4.85 -66.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097083152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.509 kcal (2) G-P(sol) polarization free energy of solvation -71.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds