Wall clock time and date at job start Tue Mar 31 2020 07:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47274 * 2 1 4 4 C 1.50698 * 109.47450 * 120.00119 * 2 1 3 5 5 C 1.38244 * 119.98945 * 260.00577 * 4 2 1 6 6 C 1.38216 * 120.01316 * 179.97438 * 5 4 2 7 7 C 1.38326 * 119.98415 * 359.97438 * 6 5 4 8 8 Br 1.89107 * 120.00664 * 179.97438 * 7 6 5 9 9 C 1.38320 * 119.98329 * 0.25561 * 7 6 5 10 10 C 1.38220 * 119.98922 * 359.49691 * 9 7 6 11 11 N 1.46900 * 109.47083 * 240.00025 * 2 1 3 12 12 C 1.46905 * 111.00074 * 184.29994 * 11 2 1 13 13 C 1.53234 * 109.33936 * 172.74650 * 12 11 2 14 14 N 1.47075 * 108.52278 * 53.83375 * 13 12 11 15 15 C 1.34778 * 120.88455 * 128.79157 * 14 13 12 16 16 O 1.21692 * 120.00172 * 174.70899 * 15 14 13 17 17 C 1.46372 * 119.99800 * 354.71058 * 15 14 13 18 18 H 1.08001 * 120.00095 * 351.25617 * 17 15 14 19 19 C 1.40051 * 119.99931 * 171.25215 * 17 15 14 20 20 N 1.30666 * 120.00191 * 358.53514 * 19 17 15 21 21 Si 1.86801 * 120.00061 * 178.53527 * 19 17 15 22 22 H 1.48500 * 109.47312 * 85.02896 * 21 19 17 23 23 H 1.48505 * 109.47252 * 205.03205 * 21 19 17 24 24 H 1.48503 * 109.46962 * 325.02870 * 21 19 17 25 25 C 1.47077 * 118.23645 * 308.81033 * 14 13 12 26 26 C 1.46904 * 111.00109 * 59.99954 * 11 2 1 27 27 H 1.08997 * 109.47297 * 300.00310 * 1 2 3 28 28 H 1.09000 * 109.47019 * 60.00406 * 1 2 3 29 29 H 1.09004 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99431 * 359.97438 * 5 4 2 31 31 H 1.07996 * 120.00851 * 179.97438 * 6 5 4 32 32 H 1.08003 * 120.00677 * 179.74443 * 9 7 6 33 33 H 1.07998 * 119.99614 * 180.25369 * 10 9 7 34 34 H 1.09001 * 109.49328 * 292.70905 * 12 11 2 35 35 H 1.09004 * 109.49043 * 52.78589 * 12 11 2 36 36 H 1.08994 * 109.62879 * 294.11899 * 13 12 11 37 37 H 1.09001 * 109.62633 * 173.53853 * 13 12 11 38 38 H 0.97000 * 120.00278 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.63483 * 291.47822 * 25 14 13 40 40 H 1.08996 * 109.63350 * 170.89523 * 25 14 13 41 41 H 1.08997 * 109.48961 * 307.21639 * 26 11 2 42 42 H 1.09000 * 109.49155 * 67.29389 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4587 0.0197 2.3242 6 6 2.9191 -0.6314 3.4531 7 6 2.9527 -2.0138 3.4885 8 35 3.5832 -2.9052 5.0326 9 6 2.5306 -2.7438 2.3921 10 6 2.0655 -2.0919 1.2655 11 7 2.0196 -0.6925 -1.1994 12 6 3.4845 -0.8018 -1.1831 13 6 3.9407 -1.6828 -2.3510 14 7 3.3714 -1.1418 -3.5945 15 6 4.1537 -0.8962 -4.6641 16 8 3.6537 -0.5403 -5.7149 17 6 5.6049 -1.0575 -4.5618 18 1 6.0621 -1.2346 -3.5994 19 6 6.4006 -0.9824 -5.7118 20 7 5.8450 -0.7968 -6.8798 21 14 8.2564 -1.1474 -5.5761 22 1 8.6276 -2.5852 -5.5866 23 1 8.8998 -0.4616 -6.7254 24 1 8.7171 -0.5266 -4.3082 25 6 1.9256 -0.8756 -3.6397 26 6 1.5486 -0.0264 -2.4211 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.4320 1.0990 2.2966 31 1 3.2524 -0.0610 4.3074 32 1 2.5606 -3.8231 2.4178 33 1 1.7321 -2.6619 0.4110 34 1 3.9244 0.1905 -1.2825 35 1 3.8053 -1.2497 -0.2426 36 1 3.5875 -2.7028 -2.1999 37 1 5.0289 -1.6744 -2.4126 38 1 6.3961 -0.7444 -7.6763 39 1 1.3786 -1.8180 -3.6125 40 1 1.6814 -0.3336 -4.5533 41 1 0.4655 0.0881 -2.3784 42 1 2.0155 0.9551 -2.5033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:03 Heat of formation + Delta-G solvation = 6.818444 kcal Electronic energy + Delta-G solvation = -24901.716076 eV Core-core repulsion = 21314.067923 eV Total energy + Delta-G solvation = -3587.648153 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14184 -38.57665 -36.78194 -34.36765 -32.57598 -32.29884 -31.29215 -30.70057 -30.66409 -28.59197 -26.65188 -25.60423 -23.49497 -23.11761 -22.40879 -21.08767 -20.22754 -18.78108 -17.01922 -16.76871 -15.96743 -15.63328 -15.38096 -14.85952 -14.63756 -14.33236 -14.21771 -14.19157 -13.84959 -13.61885 -13.41546 -13.18802 -12.62315 -12.48119 -12.20324 -11.91675 -11.60541 -11.52110 -11.40070 -11.27429 -11.13258 -10.97069 -10.86426 -10.82498 -10.59918 -10.50097 -10.38009 -10.22554 -9.97090 -9.19084 -8.87784 -8.72540 -8.25305 -7.60349 -7.21077 -6.22521 -4.66175 0.87664 1.13585 1.41999 3.12609 3.19397 3.22058 3.40450 3.90064 4.08449 4.47568 4.53200 4.58455 4.61692 4.72240 5.07709 5.11235 5.19366 5.27935 5.29952 5.48512 5.48937 5.58722 5.67403 5.68142 5.74158 5.79629 5.86873 5.89633 5.99048 6.00393 6.07278 6.14248 6.27032 6.38308 6.45822 6.51437 6.63258 6.69634 7.19528 7.24268 7.43613 7.59783 8.11431 8.34825 9.00373 9.42121 10.55474 10.73756 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.002496 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.149941 B =11215.637402 C =12925.984405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.115 3.885 3 H 0.048 0.952 4 C -0.056 4.056 5 C -0.112 4.112 6 C -0.093 4.093 7 C -0.093 4.093 8 Br -0.061 7.061 9 C -0.094 4.094 10 C -0.085 4.085 11 N -0.528 5.528 12 C 0.039 3.961 13 C 0.129 3.871 14 N -0.644 5.644 15 C 0.561 3.439 16 O -0.579 6.579 17 C -0.545 4.545 18 H 0.072 0.928 19 C 0.089 3.911 20 N -0.770 5.770 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.265 1.265 25 C 0.127 3.873 26 C 0.042 3.958 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.269 0.731 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.689 -1.600 24.306 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.007 3.993 3 H 0.066 0.934 4 C -0.057 4.057 5 C -0.132 4.132 6 C -0.113 4.113 7 C -0.172 4.172 8 Br 0.025 6.975 9 C -0.114 4.114 10 C -0.104 4.104 11 N -0.253 5.253 12 C -0.090 4.090 13 C 0.005 3.995 14 N -0.383 5.383 15 C 0.367 3.633 16 O -0.462 6.462 17 C -0.582 4.582 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.399 5.399 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.189 1.189 25 C 0.002 3.998 26 C -0.086 4.086 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.161 0.839 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.888 -2.179 24.060 25.413 hybrid contribution 1.190 0.934 -0.067 1.514 sum -6.699 -1.245 23.992 24.941 Atomic orbital electron populations 1.21873 0.93211 1.02966 1.01789 1.20577 0.95788 0.94971 0.87969 0.93395 1.19962 0.96819 0.94138 0.94750 1.21037 0.99314 1.00070 0.92749 1.21010 0.99248 0.92286 0.98762 1.21772 1.06620 0.94953 0.93903 1.96703 1.87441 1.78125 1.35272 1.21171 0.97986 1.00239 0.91988 1.21158 0.97671 0.94028 0.97501 1.62040 1.11083 1.51268 1.00932 1.22625 0.86672 0.99832 0.99833 1.21469 0.99757 0.95154 0.83157 1.48252 1.05965 1.69842 1.14199 1.18241 0.87226 0.76861 0.80948 1.90586 1.75528 1.51902 1.28185 1.20936 0.90028 1.52863 0.94382 0.91003 1.25714 1.00032 0.92574 0.94799 1.69990 1.36408 1.34893 0.98560 0.86421 0.83008 0.78958 0.78600 1.19597 1.20464 1.18928 1.21188 0.84133 0.98055 0.96401 1.22609 0.99768 0.96213 0.90054 0.92319 0.91767 0.91464 0.85415 0.85259 0.85072 0.83937 0.94696 0.90590 0.93289 0.88743 0.92041 0.93274 0.89703 0.90326 0.94756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.95 37.16 0.33 -0.99 16 2 C 0.12 1.28 2.28 -68.87 -0.16 1.12 16 3 H 0.05 0.55 8.00 -51.92 -0.42 0.14 16 4 C -0.06 -0.59 3.66 -104.62 -0.38 -0.97 16 5 C -0.11 -1.08 9.67 -39.59 -0.38 -1.46 16 6 C -0.09 -0.88 9.79 -39.56 -0.39 -1.27 16 7 C -0.09 -0.94 6.22 -39.52 -0.25 -1.18 16 8 Br -0.06 -0.57 33.70 -68.01 -2.29 -2.86 16 9 C -0.09 -0.94 9.79 -39.56 -0.39 -1.33 16 10 C -0.08 -0.89 8.13 -39.59 -0.32 -1.21 16 11 N -0.53 -7.21 3.84 -227.72 -0.87 -8.09 16 12 C 0.04 0.60 5.23 -3.70 -0.02 0.58 16 13 C 0.13 2.39 6.52 -3.61 -0.02 2.37 16 14 N -0.64 -14.51 3.01 -174.13 -0.52 -15.03 16 15 C 0.56 15.87 7.61 -12.99 -0.10 15.77 16 16 O -0.58 -18.66 14.57 5.20 0.08 -18.58 16 17 C -0.55 -15.15 8.84 -35.63 -0.31 -15.47 16 18 H 0.07 1.82 5.75 -52.49 -0.30 1.52 16 19 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 20 N -0.77 -22.95 11.87 55.55 0.66 -22.29 16 21 Si 0.91 19.94 29.56 -169.99 -5.02 14.91 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 C 0.13 2.44 6.58 -3.60 -0.02 2.41 16 26 C 0.04 0.64 5.40 -3.70 -0.02 0.62 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.60 6.25 -51.93 -0.32 0.27 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.13 1.02 8.04 -52.48 -0.42 0.60 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.14 1.55 7.72 -52.49 -0.41 1.15 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.05 5.93 -51.93 -0.31 0.74 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.84 5.39 -51.93 -0.28 1.56 16 38 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.82 7.10 -51.93 -0.37 1.45 16 41 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -32.87 355.41 -10.80 -43.67 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.65 Total: 1.57 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.53 Total: 1.34 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.74 Total: -45.41 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.08 Total: -18.58 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.87 -10.80 -43.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.488 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds