Wall clock time and date at job start Tue Mar 31 2020 07:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47202 * 2 1 4 4 C 1.50706 * 109.46952 * 240.00118 * 2 1 3 5 5 C 1.38240 * 119.98918 * 205.19212 * 4 2 1 6 6 C 1.38221 * 120.00965 * 179.77398 * 5 4 2 7 7 C 1.38324 * 119.98725 * 0.49637 * 6 5 4 8 8 Br 1.89098 * 120.00795 * 179.72622 * 7 6 5 9 9 C 1.38322 * 119.98016 * 359.75812 * 7 6 5 10 10 C 1.38217 * 119.99133 * 359.97438 * 9 7 6 11 11 N 1.46900 * 109.47227 * 120.00459 * 2 1 3 12 12 C 1.46895 * 110.99757 * 286.92920 * 11 2 1 13 13 C 1.53244 * 109.36415 * 187.24111 * 12 11 2 14 14 N 1.47086 * 108.51396 * 306.21503 * 13 12 11 15 15 C 1.34782 * 120.85413 * 231.18455 * 14 13 12 16 16 O 1.21695 * 119.99612 * 185.54827 * 15 14 13 17 17 C 1.46369 * 120.00293 * 5.55910 * 15 14 13 18 18 H 1.08005 * 119.99471 * 333.04399 * 17 15 14 19 19 C 1.40046 * 120.00458 * 153.05552 * 17 15 14 20 20 N 1.30669 * 120.00452 * 176.46190 * 19 17 15 21 21 Si 1.86808 * 119.99734 * 356.45557 * 19 17 15 22 22 H 1.48498 * 109.47052 * 88.11041 * 21 19 17 23 23 H 1.48495 * 109.47045 * 208.10654 * 21 19 17 24 24 H 1.48493 * 109.46936 * 328.10929 * 21 19 17 25 25 C 1.47077 * 118.26303 * 51.13822 * 14 13 12 26 26 C 1.46897 * 111.00229 * 51.23321 * 11 2 1 27 27 H 1.08993 * 109.47108 * 299.99636 * 1 2 3 28 28 H 1.08997 * 109.47254 * 60.00010 * 1 2 3 29 29 H 1.09008 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99393 * 0.02562 * 5 4 2 31 31 H 1.08000 * 120.00706 * 180.23520 * 6 5 4 32 32 H 1.08008 * 120.00474 * 179.97438 * 9 7 6 33 33 H 1.07998 * 119.99497 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.49330 * 307.21403 * 12 11 2 35 35 H 1.09001 * 109.49136 * 67.26723 * 12 11 2 36 36 H 1.09002 * 109.62552 * 65.88958 * 13 12 11 37 37 H 1.08992 * 109.62946 * 186.47331 * 13 12 11 38 38 H 0.96995 * 120.00578 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.62778 * 189.12506 * 25 14 13 40 40 H 1.08992 * 109.62694 * 68.54171 * 25 14 13 41 41 H 1.08999 * 109.49247 * 292.70548 * 26 11 2 42 42 H 1.09000 * 109.49376 * 52.75478 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 3.2841 -1.2970 -1.2272 6 6 3.7433 -1.9527 -2.3540 7 6 2.9543 -2.0130 -3.4885 8 35 3.5851 -2.9033 -5.0329 9 6 1.7039 -1.4214 -3.4931 10 6 1.2433 -0.7707 -2.3640 11 7 2.0197 -0.6926 1.1994 12 6 1.8186 0.1288 2.4005 13 6 2.5009 -0.5441 3.5963 14 7 2.0086 -1.9264 3.6978 15 6 1.5306 -2.4061 4.8632 16 8 1.2216 -3.5794 4.9572 17 6 1.3829 -1.5158 6.0156 18 1 2.0160 -0.6460 6.1105 19 6 0.4210 -1.7920 6.9952 20 7 0.3354 -1.0369 8.0582 21 14 -0.7400 -3.2400 6.7822 22 1 -0.1152 -4.4627 7.3476 23 1 -2.0140 -2.9615 7.4924 24 1 -1.0135 -3.4466 5.3374 25 6 2.0506 -2.7708 2.4944 26 6 1.3856 -2.0099 1.3424 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9016 -1.2463 -0.3426 31 1 4.7197 -2.4142 -2.3500 32 1 1.0877 -1.4680 -4.3789 33 1 0.2673 -0.3085 -2.3677 34 1 2.2524 1.1163 2.2426 35 1 0.7514 0.2278 2.5990 36 1 3.5805 -0.5505 3.4459 37 1 2.2588 -0.0007 4.5095 38 1 -0.3310 -1.2280 8.7366 39 1 1.5108 -3.6994 2.6796 40 1 3.0867 -2.9912 2.2378 41 1 0.3245 -1.8816 1.5559 42 1 1.5048 -2.5734 0.4170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:06 Heat of formation + Delta-G solvation = 0.413148 kcal Electronic energy + Delta-G solvation = -25019.549885 eV Core-core repulsion = 21431.623977 eV Total energy + Delta-G solvation = -3587.925907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25773 -38.83371 -37.25223 -34.65572 -32.84767 -32.40731 -31.45310 -30.83409 -30.50998 -28.44809 -27.06008 -25.90027 -23.55294 -23.27113 -22.70652 -21.19326 -20.15801 -18.64365 -17.12323 -16.86006 -16.16360 -15.58560 -15.53570 -15.10347 -14.81846 -14.63588 -14.47510 -14.24208 -13.77880 -13.65778 -13.44094 -13.39106 -12.82024 -12.44836 -12.12612 -12.07901 -12.00292 -11.88756 -11.62992 -11.41180 -11.22137 -10.98233 -10.93747 -10.74817 -10.63467 -10.55966 -10.49688 -10.33182 -9.57339 -9.20865 -9.02631 -8.75332 -8.33255 -8.00081 -7.51442 -6.61930 -4.81454 0.86785 1.12683 1.40209 3.38514 3.40797 3.43763 3.66199 3.83945 4.14690 4.23942 4.47984 4.48673 4.59062 4.70421 4.94275 5.05024 5.14539 5.20090 5.29721 5.35442 5.38363 5.45657 5.46809 5.58404 5.66675 5.74581 5.77341 5.79611 5.91904 5.96659 6.03431 6.08776 6.16193 6.31040 6.36666 6.38912 6.53962 6.62992 7.00621 7.11959 7.17469 7.61153 7.87073 8.31448 8.71498 9.11178 9.98597 10.40160 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.002178 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.798623 B =12854.064597 C =13240.612403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.116 3.884 3 H 0.096 0.904 4 C -0.056 4.056 5 C -0.085 4.085 6 C -0.095 4.095 7 C -0.094 4.094 8 Br -0.062 7.062 9 C -0.095 4.095 10 C -0.115 4.115 11 N -0.527 5.527 12 C 0.041 3.959 13 C 0.126 3.874 14 N -0.633 5.633 15 C 0.560 3.440 16 O -0.613 6.613 17 C -0.536 4.536 18 H 0.091 0.909 19 C 0.103 3.897 20 N -0.835 5.835 21 Si 0.952 3.048 22 H -0.276 1.276 23 H -0.316 1.316 24 H -0.263 1.263 25 C 0.124 3.876 26 C 0.043 3.957 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.281 0.719 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 3.702 -26.100 26.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.008 3.992 3 H 0.114 0.886 4 C -0.057 4.057 5 C -0.104 4.104 6 C -0.115 4.115 7 C -0.173 4.173 8 Br 0.023 6.977 9 C -0.115 4.115 10 C -0.134 4.134 11 N -0.251 5.251 12 C -0.087 4.087 13 C 0.002 3.998 14 N -0.368 5.368 15 C 0.368 3.632 16 O -0.503 6.503 17 C -0.572 4.572 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.465 5.465 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.247 1.247 24 H -0.188 1.188 25 C 0.000 4.000 26 C -0.086 4.086 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.717 2.771 -26.481 27.040 hybrid contribution -1.464 -0.147 0.300 1.502 sum 3.252 2.623 -26.181 26.512 Atomic orbital electron populations 1.22536 0.96639 1.02936 1.02472 1.20598 0.93011 0.97480 0.88154 0.88616 1.20006 0.94188 0.96985 0.94501 1.21185 0.95749 0.95666 0.97761 1.21178 0.99590 0.98960 0.91743 1.21781 0.97850 1.04227 0.93488 1.96699 1.88456 1.77150 1.35351 1.21029 0.94181 0.97322 0.98949 1.21150 1.00163 0.99781 0.92349 1.62154 1.57452 1.03467 1.02038 1.22574 0.99891 0.96260 0.90000 1.21568 0.96873 0.83639 0.97734 1.47877 1.67394 1.12011 1.09477 1.18419 0.75297 0.87263 0.82232 1.90303 1.57028 1.18920 1.84069 1.20694 1.21613 1.11647 1.03243 0.89106 1.25638 0.96812 0.96273 0.92632 1.69530 1.32224 1.37086 1.07679 0.85517 0.76360 0.80720 0.79107 1.20183 1.24666 1.18789 1.21303 0.99732 0.94620 0.84362 1.22533 0.96920 0.90051 0.99086 0.91762 0.91872 0.91714 0.83816 0.85168 0.85337 0.85025 0.90385 0.93961 0.92835 0.87964 0.90900 0.89635 0.92880 0.94119 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 7.57 37.16 0.28 -1.56 16 2 C 0.12 1.19 2.71 -68.86 -0.19 1.00 16 3 H 0.10 0.90 7.91 -51.93 -0.41 0.49 16 4 C -0.06 -0.56 4.55 -104.62 -0.48 -1.03 16 5 C -0.08 -0.87 8.86 -39.59 -0.35 -1.22 16 6 C -0.09 -0.94 9.79 -39.56 -0.39 -1.32 16 7 C -0.09 -0.93 6.22 -39.52 -0.25 -1.17 16 8 Br -0.06 -0.56 33.70 -68.01 -2.29 -2.86 16 9 C -0.09 -0.87 9.79 -39.56 -0.39 -1.26 16 10 C -0.12 -1.04 9.13 -39.59 -0.36 -1.40 16 11 N -0.53 -6.65 3.64 -227.73 -0.83 -7.48 16 12 C 0.04 0.57 5.31 -3.70 -0.02 0.55 16 13 C 0.13 2.17 6.51 -3.60 -0.02 2.15 16 14 N -0.63 -13.29 3.01 -174.12 -0.52 -13.81 16 15 C 0.56 14.67 7.07 -12.99 -0.09 14.57 16 16 O -0.61 -17.64 12.31 5.19 0.06 -17.58 16 17 C -0.54 -14.76 9.10 -35.63 -0.32 -15.09 16 18 H 0.09 2.48 6.45 -52.48 -0.34 2.14 16 19 C 0.10 2.90 5.52 -17.37 -0.10 2.81 16 20 N -0.83 -23.45 13.92 55.55 0.77 -22.68 16 21 Si 0.95 24.84 26.09 -169.99 -4.43 20.41 16 22 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.32 -7.81 7.11 56.52 0.40 -7.41 16 24 H -0.26 -7.17 6.56 56.52 0.37 -6.80 16 25 C 0.12 2.23 6.58 -3.60 -0.02 2.20 16 26 C 0.04 0.62 4.47 -3.70 -0.02 0.60 16 27 H 0.06 0.69 6.97 -51.93 -0.36 0.33 16 28 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 29 H 0.06 0.71 6.48 -51.92 -0.34 0.37 16 30 H 0.14 1.52 7.55 -52.49 -0.40 1.12 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.13 0.98 6.06 -52.49 -0.32 0.66 16 34 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 35 H 0.04 0.64 7.05 -51.93 -0.37 0.27 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.92 5.58 -51.93 -0.29 1.63 16 38 H 0.28 7.29 8.29 -40.82 -0.34 6.95 16 39 H 0.09 1.71 7.10 -51.93 -0.37 1.34 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.65 6.67 -51.93 -0.35 0.30 16 42 H 0.07 1.00 6.91 -51.93 -0.36 0.64 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -30.88 346.54 -10.23 -41.11 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.50 Total: -2.16 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.71 Total: -0.18 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.58 Total: -43.96 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.06 Total: -17.58 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.43 Total: 20.41 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.88 -10.23 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.523 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds