Wall clock time and date at job start Tue Mar 31 2020 07:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47202 * 2 1 4 4 C 1.50706 * 109.46952 * 240.00118 * 2 1 3 5 5 C 1.38240 * 119.98918 * 205.19212 * 4 2 1 6 6 C 1.38221 * 120.00965 * 179.77398 * 5 4 2 7 7 C 1.38324 * 119.98725 * 0.49637 * 6 5 4 8 8 Br 1.89098 * 120.00795 * 179.72622 * 7 6 5 9 9 C 1.38322 * 119.98016 * 359.75812 * 7 6 5 10 10 C 1.38217 * 119.99133 * 359.97438 * 9 7 6 11 11 N 1.46900 * 109.47227 * 120.00459 * 2 1 3 12 12 C 1.46895 * 110.99757 * 286.92920 * 11 2 1 13 13 C 1.53244 * 109.36415 * 187.24111 * 12 11 2 14 14 N 1.47086 * 108.51396 * 306.21503 * 13 12 11 15 15 C 1.34782 * 120.85413 * 231.18455 * 14 13 12 16 16 O 1.21695 * 119.99612 * 185.54827 * 15 14 13 17 17 C 1.46369 * 120.00293 * 5.55910 * 15 14 13 18 18 H 1.08005 * 119.99471 * 333.04399 * 17 15 14 19 19 C 1.40046 * 120.00458 * 153.05552 * 17 15 14 20 20 N 1.30669 * 120.00452 * 176.46190 * 19 17 15 21 21 Si 1.86808 * 119.99734 * 356.45557 * 19 17 15 22 22 H 1.48498 * 109.47052 * 88.11041 * 21 19 17 23 23 H 1.48495 * 109.47045 * 208.10654 * 21 19 17 24 24 H 1.48493 * 109.46936 * 328.10929 * 21 19 17 25 25 C 1.47077 * 118.26303 * 51.13822 * 14 13 12 26 26 C 1.46897 * 111.00229 * 51.23321 * 11 2 1 27 27 H 1.08993 * 109.47108 * 299.99636 * 1 2 3 28 28 H 1.08997 * 109.47254 * 60.00010 * 1 2 3 29 29 H 1.09008 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99393 * 0.02562 * 5 4 2 31 31 H 1.08000 * 120.00706 * 180.23520 * 6 5 4 32 32 H 1.08008 * 120.00474 * 179.97438 * 9 7 6 33 33 H 1.07998 * 119.99497 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.49330 * 307.21403 * 12 11 2 35 35 H 1.09001 * 109.49136 * 67.26723 * 12 11 2 36 36 H 1.09002 * 109.62552 * 65.88958 * 13 12 11 37 37 H 1.08992 * 109.62946 * 186.47331 * 13 12 11 38 38 H 0.96995 * 120.00578 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.62778 * 189.12506 * 25 14 13 40 40 H 1.08992 * 109.62694 * 68.54171 * 25 14 13 41 41 H 1.08999 * 109.49247 * 292.70548 * 26 11 2 42 42 H 1.09000 * 109.49376 * 52.75478 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 3.2841 -1.2970 -1.2272 6 6 3.7433 -1.9527 -2.3540 7 6 2.9543 -2.0130 -3.4885 8 35 3.5851 -2.9033 -5.0329 9 6 1.7039 -1.4214 -3.4931 10 6 1.2433 -0.7707 -2.3640 11 7 2.0197 -0.6926 1.1994 12 6 1.8186 0.1288 2.4005 13 6 2.5009 -0.5441 3.5963 14 7 2.0086 -1.9264 3.6978 15 6 1.5306 -2.4061 4.8632 16 8 1.2216 -3.5794 4.9572 17 6 1.3829 -1.5158 6.0156 18 1 2.0160 -0.6460 6.1105 19 6 0.4210 -1.7920 6.9952 20 7 0.3354 -1.0369 8.0582 21 14 -0.7400 -3.2400 6.7822 22 1 -0.1152 -4.4627 7.3476 23 1 -2.0140 -2.9615 7.4924 24 1 -1.0135 -3.4466 5.3374 25 6 2.0506 -2.7708 2.4944 26 6 1.3856 -2.0099 1.3424 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9016 -1.2463 -0.3426 31 1 4.7197 -2.4142 -2.3500 32 1 1.0877 -1.4680 -4.3789 33 1 0.2673 -0.3085 -2.3677 34 1 2.2524 1.1163 2.2426 35 1 0.7514 0.2278 2.5990 36 1 3.5805 -0.5505 3.4459 37 1 2.2588 -0.0007 4.5095 38 1 -0.3310 -1.2280 8.7366 39 1 1.5108 -3.6994 2.6796 40 1 3.0867 -2.9912 2.2378 41 1 0.3245 -1.8816 1.5559 42 1 1.5048 -2.5734 0.4170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097097354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:05 Heat of formation + Delta-G solvation = -17.811223 kcal Electronic energy + Delta-G solvation = -25020.340153 eV Core-core repulsion = 21431.623977 eV Total energy + Delta-G solvation = -3588.716175 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.23695 -40.18370 -38.71746 -36.06569 -34.98560 -33.40643 -32.29871 -32.08707 -31.43287 -29.28000 -28.84526 -27.30462 -24.65438 -24.52700 -23.43023 -22.51653 -21.35710 -20.14858 -18.67353 -18.11664 -17.75850 -16.89292 -16.62927 -16.31498 -16.02473 -15.94257 -15.66988 -15.50638 -15.21648 -14.67101 -14.51445 -14.33752 -14.23201 -14.01753 -13.87685 -13.43230 -13.23855 -12.91094 -12.85813 -12.80984 -12.56646 -12.32582 -12.15401 -12.04848 -11.82680 -11.76650 -11.54906 -11.47964 -11.21874 -11.18114 -10.07171 -9.91645 -9.55002 -9.47535 -9.11330 -8.76986 -6.96348 0.13518 0.41981 0.69035 1.29706 1.32403 1.55163 2.06633 2.28189 2.54984 2.68880 2.93198 3.26769 3.67569 3.87647 3.95211 4.03497 4.11854 4.17244 4.23920 4.32799 4.39879 4.47670 4.51804 4.56030 4.64646 4.69857 4.77847 4.83988 4.87207 4.96646 4.98213 5.10134 5.14881 5.17156 5.22942 5.32303 5.36078 5.60338 5.69918 5.90968 5.94976 6.06049 6.11547 6.25825 6.65239 7.12887 7.95405 8.29382 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.002178 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.798623 B =12854.064597 C =13240.612403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.120 3.880 3 H 0.113 0.887 4 C -0.062 4.062 5 C -0.092 4.092 6 C -0.102 4.102 7 C -0.104 4.104 8 Br -0.059 7.059 9 C -0.098 4.098 10 C -0.113 4.113 11 N -0.523 5.523 12 C 0.051 3.949 13 C 0.122 3.878 14 N -0.632 5.632 15 C 0.556 3.444 16 O -0.645 6.645 17 C -0.550 4.550 18 H 0.086 0.914 19 C 0.072 3.928 20 N -0.855 5.855 21 Si 0.994 3.006 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.284 1.284 25 C 0.121 3.879 26 C 0.059 3.941 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.112 0.888 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.290 0.710 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.026 0.974 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 4.738 -28.269 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.013 3.987 3 H 0.130 0.870 4 C -0.063 4.063 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.183 4.183 8 Br 0.026 6.974 9 C -0.118 4.118 10 C -0.132 4.132 11 N -0.247 5.247 12 C -0.077 4.077 13 C -0.001 4.001 14 N -0.365 5.365 15 C 0.361 3.639 16 O -0.538 6.538 17 C -0.587 4.587 18 H 0.104 0.896 19 C -0.143 4.143 20 N -0.487 5.487 21 Si 0.825 3.175 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.211 1.211 25 C -0.002 4.002 26 C -0.070 4.070 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.130 0.870 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.614 3.851 -28.677 29.300 hybrid contribution -1.335 -0.454 0.870 1.657 sum 3.279 3.397 -27.806 28.204 Atomic orbital electron populations 1.22502 0.96160 1.02380 1.03204 1.20648 0.93295 0.97970 0.86833 0.86966 1.20002 0.94281 0.97354 0.94672 1.21185 0.95989 0.96154 0.97775 1.21288 1.00026 0.99065 0.91772 1.21940 0.98292 1.04471 0.93641 1.96702 1.88492 1.77121 1.35098 1.21262 0.94056 0.96833 0.99607 1.21337 1.00671 0.99354 0.91823 1.62110 1.57315 1.02712 1.02515 1.22455 0.98838 0.97389 0.89035 1.21743 0.98128 0.81537 0.98733 1.47847 1.65890 1.13829 1.08914 1.18354 0.75463 0.86547 0.83490 1.90272 1.58513 1.20091 1.84969 1.20888 1.21726 1.11818 1.04247 0.89646 1.26099 0.97843 0.97530 0.92824 1.69533 1.33173 1.37841 1.08149 0.84915 0.76263 0.78608 0.77666 1.21642 1.22111 1.21055 1.21457 1.00693 0.93833 0.84215 1.22293 0.95599 0.91044 0.98032 0.92764 0.89435 0.92911 0.84243 0.84552 0.83861 0.83230 0.87026 0.95339 0.91121 0.89889 0.89949 0.92124 0.91346 0.95576 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 7.57 71.98 0.54 -2.57 16 2 C 0.12 2.09 2.71 44.17 0.12 2.21 16 3 H 0.11 1.66 7.91 -2.39 -0.02 1.64 16 4 C -0.06 -1.06 4.55 -19.86 -0.09 -1.15 16 5 C -0.09 -1.68 8.86 22.27 0.20 -1.48 16 6 C -0.10 -1.82 9.79 22.29 0.22 -1.60 16 7 C -0.10 -1.83 6.22 22.31 0.14 -1.69 16 8 Br -0.06 -0.99 33.70 -20.37 -0.69 -1.68 16 9 C -0.10 -1.53 9.79 22.28 0.22 -1.31 16 10 C -0.11 -1.69 9.13 22.26 0.20 -1.48 16 11 N -0.52 -11.93 3.64 -874.42 -3.18 -15.12 16 12 C 0.05 1.31 5.31 86.39 0.46 1.77 16 13 C 0.12 4.07 6.51 86.35 0.56 4.63 16 14 N -0.63 -26.50 3.01 -823.02 -2.48 -28.98 16 15 C 0.56 29.55 7.07 86.36 0.61 30.16 16 16 O -0.65 -37.90 12.31 -4.33 -0.05 -37.96 16 17 C -0.55 -30.83 9.10 24.83 0.23 -30.60 16 18 H 0.09 4.77 6.45 -2.91 -0.02 4.75 16 19 C 0.07 4.06 5.52 85.30 0.47 4.53 16 20 N -0.86 -48.16 13.92 21.83 0.30 -47.85 16 21 Si 0.99 51.68 26.09 68.60 1.79 53.47 16 22 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.28 -15.66 6.56 99.48 0.65 -15.00 16 25 C 0.12 4.30 6.58 86.35 0.57 4.86 16 26 C 0.06 1.63 4.47 86.38 0.39 2.01 16 27 H 0.05 1.04 6.97 -2.39 -0.02 1.03 16 28 H 0.09 1.05 6.56 -2.39 -0.02 1.04 16 29 H 0.05 1.03 6.48 -2.38 -0.02 1.02 16 30 H 0.14 2.65 7.55 -2.91 -0.02 2.62 16 31 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.15 1.65 6.06 -2.91 -0.02 1.63 16 34 H 0.11 2.16 7.96 -2.39 -0.02 2.14 16 35 H 0.03 0.82 7.05 -2.39 -0.02 0.80 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 3.12 5.58 -2.39 -0.01 3.11 16 38 H 0.29 14.96 8.29 -92.71 -0.77 14.19 16 39 H 0.06 2.45 7.10 -2.39 -0.02 2.44 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.03 0.81 6.67 -2.39 -0.02 0.79 16 42 H 0.09 2.26 6.91 -2.39 -0.02 2.24 16 Total: -1.00 -66.68 346.54 1.51 -65.16 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 0.99 Total: 4.66 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 4.83 Total: 8.29 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -5.35 Total: -91.95 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.05 Total: -37.96 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 1.79 Total: 53.47 kcal Atomic # 35 Polarization: -0.99 SS G_CDS: -0.69 Total: -1.68 kcal Total: -66.68 1.51 -65.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.353 kcal (2) G-P(sol) polarization free energy of solvation -66.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds