Wall clock time and date at job start Tue Mar 31 2020 06:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 H 1.08998 * 109.46916 * 55.00299 * 3 2 1 5 5 C 1.50708 * 109.47111 * 175.00176 * 3 2 1 6 6 H 1.07992 * 120.00001 * 120.00532 * 5 3 2 7 7 C 1.37874 * 119.99696 * 299.99726 * 5 3 2 8 8 N 1.31511 * 120.00583 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99803 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46704 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46779 * 120.00228 * 9 7 5 12 12 H 1.48496 * 109.47165 * 240.00521 * 9 7 5 13 13 N 1.46500 * 109.47101 * 295.00219 * 3 2 1 14 14 C 1.34777 * 120.00116 * 84.99958 * 13 3 2 15 15 O 1.21589 * 119.99463 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00057 * 179.97438 * 14 13 3 17 17 C 1.40036 * 119.99931 * 185.31237 * 16 14 13 18 18 C 1.39009 * 119.97766 * 33.51941 * 17 16 14 19 19 C 1.38163 * 120.24496 * 180.23041 * 18 17 16 20 20 C 1.38180 * 120.20752 * 359.49774 * 19 18 17 21 21 Cl 1.73600 * 120.02160 * 180.23451 * 20 19 18 22 22 C 1.39698 * 119.95748 * 0.24338 * 20 19 18 23 23 C 1.47785 * 120.12434 * 180.02562 * 22 20 19 24 24 O 1.21568 * 119.99781 * 0.02562 * 23 22 20 25 25 N 1.34765 * 120.00206 * 180.02562 * 23 22 20 26 26 C 1.46498 * 120.00399 * 180.02562 * 25 23 22 27 27 C 1.53001 * 117.50309 * 223.75131 * 26 25 23 28 28 C 1.52995 * 117.50322 * 155.08745 * 26 25 23 29 29 C 1.38532 * 119.97882 * 213.24391 * 17 16 14 30 30 H 1.09003 * 109.46897 * 59.99589 * 1 2 3 31 31 H 1.08995 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46711 * 299.99514 * 1 2 3 33 33 H 1.09003 * 109.47061 * 240.00073 * 2 1 3 34 34 H 1.08998 * 109.47330 * 120.00608 * 2 1 3 35 35 H 0.96997 * 120.00360 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99776 * 264.99416 * 13 3 2 37 37 H 0.97003 * 120.00491 * 5.31266 * 16 14 13 38 38 H 1.08000 * 119.87936 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.89409 * 179.76598 * 19 18 17 40 40 H 0.97006 * 120.00309 * 0.02562 * 25 23 22 41 41 H 1.08999 * 115.54810 * 9.41550 * 26 25 23 42 42 H 1.09001 * 117.49350 * 359.97438 * 27 26 25 43 43 H 1.09000 * 117.50354 * 145.01701 * 27 26 25 44 44 H 1.09006 * 117.49803 * 214.98032 * 28 26 25 45 45 H 1.09000 * 117.49992 * 359.97438 * 28 26 25 46 46 H 1.07996 * 120.10577 * 0.04573 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4064 0.3366 2.1729 9 14 6.0051 0.8798 1.3811 10 1 6.5988 1.5450 0.1935 11 1 6.4001 1.6154 2.6091 12 1 6.4962 -0.5192 1.4625 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3414 2.6318 -0.4319 16 7 0.0788 3.2674 -2.5183 17 6 -1.1397 3.9524 -2.6019 18 6 -1.6415 4.6157 -1.4881 19 6 -2.8455 5.2893 -1.5632 20 6 -3.5540 5.3168 -2.7492 21 17 -5.0633 6.1697 -2.8397 22 6 -3.0550 4.6577 -3.8753 23 6 -3.8094 4.6852 -5.1458 24 8 -4.8661 5.2826 -5.2124 25 7 -3.3260 4.0481 -6.2305 26 6 -4.0735 4.0759 -7.4901 27 6 -4.1962 2.7641 -8.2680 28 6 -3.2832 3.8786 -8.7852 29 6 -1.8414 3.9734 -3.7962 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8294 -0.0619 2.9495 36 1 2.2720 2.1232 -1.9978 37 1 0.6664 3.2270 -3.2891 38 1 -1.0903 4.6010 -0.5595 39 1 -3.2320 5.7995 -0.6933 40 1 -2.4830 3.5711 -6.1773 41 1 -4.9228 4.7586 -7.5178 42 1 -3.7203 1.8805 -7.8427 43 1 -5.1259 2.5840 -8.8077 44 1 -3.6128 4.4313 -9.6651 45 1 -2.2070 3.7285 -8.7001 46 1 -1.4506 3.4616 -4.6632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097141415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:01 Heat of formation + Delta-G solvation = -8.744664 kcal Electronic energy + Delta-G solvation = -29853.480643 eV Core-core repulsion = 25577.303971 eV Total energy + Delta-G solvation = -4276.176672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 8.31 seconds Orbital eigenvalues (eV) -40.76757 -39.94811 -38.50087 -37.27490 -36.46273 -35.42934 -34.27018 -33.39228 -32.51116 -31.12249 -31.04964 -29.18830 -26.91418 -24.78743 -23.36233 -22.87201 -22.80737 -22.12557 -21.23209 -20.42809 -19.65187 -18.48687 -18.35677 -17.03500 -16.75371 -16.38369 -15.94351 -15.66926 -15.20498 -15.13628 -14.88706 -14.66399 -14.44208 -14.21376 -13.90889 -13.46507 -13.34896 -13.03407 -12.75240 -12.55869 -12.46117 -12.01660 -11.93066 -11.72830 -11.68752 -11.52016 -11.34135 -11.25269 -11.02997 -10.92663 -10.91246 -10.39726 -10.28265 -10.08801 -9.79288 -9.66806 -9.55104 -9.25235 -9.12746 -9.05138 -8.59927 -8.18906 -7.87084 -6.20946 -4.30756 0.58722 1.00228 2.13940 2.59389 2.67823 2.95702 3.17877 3.26624 3.28471 3.36562 3.58603 3.81639 4.24225 4.32487 4.34279 4.46228 4.54238 4.58590 4.73562 4.99169 5.05704 5.11101 5.20818 5.28007 5.37659 5.48437 5.53686 5.64689 5.65699 6.00032 6.08059 6.15022 6.29126 6.33141 6.39347 6.57834 6.80930 6.86993 7.01300 7.13594 7.22537 7.25899 7.33088 7.55777 7.75171 7.85045 7.93044 8.09209 8.59972 8.71794 9.07652 9.37216 10.84364 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.002110 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.653039 B =13264.508328 C =14477.485937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.715 5.715 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.697 5.697 17 C 0.186 3.814 18 C -0.081 4.081 19 C -0.097 4.097 20 C -0.008 4.008 21 Cl -0.040 7.040 22 C -0.114 4.114 23 C 0.564 3.436 24 O -0.512 6.512 25 N -0.701 5.701 26 C 0.083 3.917 27 C -0.194 4.194 28 C -0.190 4.190 29 C -0.116 4.116 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.387 0.613 37 H 0.404 0.596 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.400 0.600 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 7.317 -18.010 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.366 5.366 14 C 0.392 3.608 15 O -0.450 6.450 16 N -0.345 5.345 17 C 0.088 3.912 18 C -0.102 4.102 19 C -0.117 4.117 20 C -0.037 4.037 21 Cl -0.011 7.011 22 C -0.119 4.119 23 C 0.351 3.649 24 O -0.387 6.387 25 N -0.352 5.352 26 C -0.023 4.023 27 C -0.233 4.233 28 C -0.228 4.228 29 C -0.139 4.139 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.219 0.781 37 H 0.239 0.761 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.236 0.764 41 H 0.157 0.843 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.273 7.632 -16.910 22.245 hybrid contribution 2.028 -0.477 -0.667 2.188 sum -10.244 7.155 -17.577 21.566 Atomic orbital electron populations 1.21817 0.98223 0.98017 1.01235 1.21967 0.92700 0.99809 1.02327 1.18769 0.94139 0.88931 0.79745 0.93103 1.21229 0.90530 1.39241 1.06390 0.92021 1.24875 0.98667 0.94734 0.95348 1.69894 1.35116 1.37402 1.09342 0.86393 0.84725 0.77818 0.78152 1.19771 1.20840 1.20842 1.45877 1.12813 1.58464 1.19408 1.16115 0.83744 0.78781 0.82165 1.90925 1.51613 1.64339 1.38093 1.42947 1.19825 1.56196 1.15493 1.17399 0.86879 0.92848 0.94043 1.21513 0.95776 0.93257 0.99622 1.20983 0.94456 0.99835 0.96391 1.20883 0.90272 0.98412 0.94151 1.98395 1.29466 1.74877 1.98373 1.19274 0.96129 1.02884 0.93563 1.18067 0.85112 0.78680 0.83028 1.90862 1.21828 1.42005 1.84040 1.45283 1.25315 1.54910 1.09733 1.21585 0.98670 1.00683 0.81366 1.23456 1.02280 0.93517 1.04025 1.23400 0.98691 1.02981 0.97756 1.20832 0.93675 1.01293 0.98071 0.94396 0.95924 0.93078 0.95065 0.88183 0.92502 0.78120 0.76062 0.82773 0.83976 0.76391 0.84288 0.88388 0.87920 0.87816 0.88406 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.58 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.29 6.67 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.27 8.73 -34.44 -0.30 -13.57 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.63 11.29 55.43 0.63 -23.01 16 9 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.71 -13.16 5.03 -59.81 -0.30 -13.46 16 14 C 0.69 12.09 6.87 -86.93 -0.60 11.49 16 15 O -0.57 -11.96 11.17 5.29 0.06 -11.90 16 16 N -0.70 -8.79 5.35 -14.25 -0.08 -8.87 16 17 C 0.19 2.32 6.27 -83.71 -0.52 1.80 16 18 C -0.08 -1.10 8.65 -39.32 -0.34 -1.44 16 19 C -0.10 -1.19 9.81 -39.63 -0.39 -1.58 16 20 C -0.01 -0.11 6.35 -39.06 -0.25 -0.35 16 21 Cl -0.04 -0.53 26.01 -51.86 -1.35 -1.88 16 22 C -0.11 -1.34 5.87 -104.96 -0.62 -1.96 16 23 C 0.56 6.65 7.76 -12.36 -0.10 6.55 16 24 O -0.51 -7.43 13.52 5.31 0.07 -7.36 16 25 N -0.70 -6.01 5.52 -54.77 -0.30 -6.31 16 26 C 0.08 0.64 6.43 -67.93 -0.44 0.21 16 27 C -0.19 -1.18 10.46 -26.69 -0.28 -1.46 16 28 C -0.19 -1.05 10.46 -26.70 -0.28 -1.33 16 29 C -0.12 -1.19 9.45 -38.98 -0.37 -1.56 16 30 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.39 6.00 8.56 -40.82 -0.35 5.66 16 37 H 0.40 3.65 8.83 -40.82 -0.36 3.29 16 38 H 0.15 2.38 6.41 -52.49 -0.34 2.04 16 39 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.40 2.50 6.86 -40.82 -0.28 2.22 16 41 H 0.14 1.24 7.40 -51.93 -0.38 0.86 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.13 0.91 6.40 -52.49 -0.34 0.57 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -30.71 391.78 -10.89 -41.61 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.95 Total: 11.29 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -4.55 Total: -0.74 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.05 Total: -51.65 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.13 Total: -19.26 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.35 Total: -1.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.71 -10.89 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097141415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.861 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.31 seconds