Wall clock time and date at job start Tue Mar 31 2020 06:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 H 1.08998 * 109.46916 * 55.00299 * 3 2 1 5 5 C 1.50708 * 109.47111 * 175.00176 * 3 2 1 6 6 H 1.07992 * 120.00001 * 120.00532 * 5 3 2 7 7 C 1.37874 * 119.99696 * 299.99726 * 5 3 2 8 8 N 1.31511 * 120.00583 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99803 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46704 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46779 * 120.00228 * 9 7 5 12 12 H 1.48496 * 109.47165 * 240.00521 * 9 7 5 13 13 N 1.46500 * 109.47101 * 295.00219 * 3 2 1 14 14 C 1.34777 * 120.00116 * 84.99958 * 13 3 2 15 15 O 1.21589 * 119.99463 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00057 * 179.97438 * 14 13 3 17 17 C 1.40036 * 119.99931 * 185.31237 * 16 14 13 18 18 C 1.39009 * 119.97766 * 33.51941 * 17 16 14 19 19 C 1.38163 * 120.24496 * 180.23041 * 18 17 16 20 20 C 1.38180 * 120.20752 * 359.49774 * 19 18 17 21 21 Cl 1.73600 * 120.02160 * 180.23451 * 20 19 18 22 22 C 1.39698 * 119.95748 * 0.24338 * 20 19 18 23 23 C 1.47785 * 120.12434 * 180.02562 * 22 20 19 24 24 O 1.21568 * 119.99781 * 0.02562 * 23 22 20 25 25 N 1.34765 * 120.00206 * 180.02562 * 23 22 20 26 26 C 1.46498 * 120.00399 * 180.02562 * 25 23 22 27 27 C 1.53001 * 117.50309 * 223.75131 * 26 25 23 28 28 C 1.52995 * 117.50322 * 155.08745 * 26 25 23 29 29 C 1.38532 * 119.97882 * 213.24391 * 17 16 14 30 30 H 1.09003 * 109.46897 * 59.99589 * 1 2 3 31 31 H 1.08995 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46711 * 299.99514 * 1 2 3 33 33 H 1.09003 * 109.47061 * 240.00073 * 2 1 3 34 34 H 1.08998 * 109.47330 * 120.00608 * 2 1 3 35 35 H 0.96997 * 120.00360 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99776 * 264.99416 * 13 3 2 37 37 H 0.97003 * 120.00491 * 5.31266 * 16 14 13 38 38 H 1.08000 * 119.87936 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.89409 * 179.76598 * 19 18 17 40 40 H 0.97006 * 120.00309 * 0.02562 * 25 23 22 41 41 H 1.08999 * 115.54810 * 9.41550 * 26 25 23 42 42 H 1.09001 * 117.49350 * 359.97438 * 27 26 25 43 43 H 1.09000 * 117.50354 * 145.01701 * 27 26 25 44 44 H 1.09006 * 117.49803 * 214.98032 * 28 26 25 45 45 H 1.09000 * 117.49992 * 359.97438 * 28 26 25 46 46 H 1.07996 * 120.10577 * 0.04573 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4064 0.3366 2.1729 9 14 6.0051 0.8798 1.3811 10 1 6.5988 1.5450 0.1935 11 1 6.4001 1.6154 2.6091 12 1 6.4962 -0.5192 1.4625 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3414 2.6318 -0.4319 16 7 0.0788 3.2674 -2.5183 17 6 -1.1397 3.9524 -2.6019 18 6 -1.6415 4.6157 -1.4881 19 6 -2.8455 5.2893 -1.5632 20 6 -3.5540 5.3168 -2.7492 21 17 -5.0633 6.1697 -2.8397 22 6 -3.0550 4.6577 -3.8753 23 6 -3.8094 4.6852 -5.1458 24 8 -4.8661 5.2826 -5.2124 25 7 -3.3260 4.0481 -6.2305 26 6 -4.0735 4.0759 -7.4901 27 6 -4.1962 2.7641 -8.2680 28 6 -3.2832 3.8786 -8.7852 29 6 -1.8414 3.9734 -3.7962 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8294 -0.0619 2.9495 36 1 2.2720 2.1232 -1.9978 37 1 0.6664 3.2270 -3.2891 38 1 -1.0903 4.6010 -0.5595 39 1 -3.2320 5.7995 -0.6933 40 1 -2.4830 3.5711 -6.1773 41 1 -4.9228 4.7586 -7.5178 42 1 -3.7203 1.8805 -7.8427 43 1 -5.1259 2.5840 -8.8077 44 1 -3.6128 4.4313 -9.6651 45 1 -2.2070 3.7285 -8.7001 46 1 -1.4506 3.4616 -4.6632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097141415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:58 Heat of formation + Delta-G solvation = -28.482473 kcal Electronic energy + Delta-G solvation = -29854.336539 eV Core-core repulsion = 25577.303971 eV Total energy + Delta-G solvation = -4277.032568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -41.85438 -41.02510 -39.54276 -38.02298 -37.51237 -36.96811 -35.56247 -34.31834 -34.15721 -32.73786 -32.01105 -30.37453 -28.68789 -25.72097 -25.08237 -23.83304 -23.29324 -23.22776 -22.12686 -21.60133 -21.28924 -19.87134 -19.33699 -18.23797 -17.76887 -17.60933 -17.15252 -16.95854 -16.55625 -16.12481 -16.03522 -15.88703 -15.44249 -15.28760 -15.02688 -14.72256 -14.53893 -14.43894 -13.99103 -13.64348 -13.53635 -13.50948 -13.15835 -12.96472 -12.83602 -12.70739 -12.59479 -12.47209 -12.32069 -12.21630 -12.13155 -12.03824 -11.57961 -11.41292 -11.23715 -11.08108 -10.99368 -10.63230 -10.52336 -10.22809 -9.74674 -9.67703 -9.06229 -8.14162 -6.30541 -0.38345 0.03353 1.14889 1.45860 1.47592 1.57734 1.62964 1.74374 1.98713 2.21914 2.43606 2.67325 3.04488 3.16170 3.40026 3.49801 3.60671 3.83378 4.06555 4.08034 4.08682 4.12532 4.24856 4.53496 4.59616 4.61105 4.64556 4.78951 4.80929 4.83966 5.02043 5.06204 5.07149 5.10852 5.24423 5.25664 5.29506 5.47122 5.49124 5.56854 5.63585 5.74594 5.77586 5.89273 6.19914 6.26447 6.42860 6.78179 7.12794 7.25457 7.37862 7.71410 8.91216 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.002110 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.653039 B =13264.508328 C =14477.485937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.296 3.704 4 H 0.002 0.998 5 C -0.543 4.543 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.712 5.712 14 C 0.693 3.307 15 O -0.609 6.609 16 N -0.674 5.674 17 C 0.172 3.828 18 C -0.096 4.096 19 C -0.096 4.096 20 C -0.019 4.019 21 Cl -0.047 7.047 22 C -0.117 4.117 23 C 0.560 3.440 24 O -0.546 6.546 25 N -0.685 5.685 26 C 0.055 3.945 27 C -0.188 4.188 28 C -0.171 4.171 29 C -0.090 4.090 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.025 0.975 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.404 0.596 37 H 0.425 0.575 38 H 0.131 0.869 39 H 0.153 0.847 40 H 0.413 0.587 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 6.900 -21.181 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.020 0.980 5 C -0.582 4.582 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.364 5.364 14 C 0.394 3.606 15 O -0.489 6.489 16 N -0.324 5.324 17 C 0.075 3.925 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.048 4.048 21 Cl -0.018 7.018 22 C -0.122 4.122 23 C 0.348 3.652 24 O -0.424 6.424 25 N -0.336 5.336 26 C -0.050 4.050 27 C -0.226 4.226 28 C -0.209 4.209 29 C -0.112 4.112 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.264 0.736 38 H 0.149 0.851 39 H 0.171 0.829 40 H 0.252 0.748 41 H 0.139 0.861 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.125 7.225 -20.184 24.153 hybrid contribution 1.591 -0.301 0.254 1.639 sum -9.534 6.924 -19.931 23.153 Atomic orbital electron populations 1.21642 0.97015 0.98833 1.00272 1.21810 0.93647 0.99334 1.01311 1.18274 0.93376 0.88802 0.80275 0.98023 1.21585 0.91378 1.38654 1.06563 0.90847 1.25714 1.02958 0.94546 0.95169 1.70046 1.36877 1.38415 1.09908 0.85373 0.79556 0.77685 0.78155 1.18348 1.21335 1.20698 1.45428 1.13750 1.58712 1.18502 1.16151 0.82982 0.78603 0.82898 1.90919 1.52552 1.65495 1.39905 1.42502 1.20203 1.55073 1.14617 1.17491 0.87082 0.93263 0.94619 1.21398 0.96327 0.94596 0.99377 1.21018 0.93994 0.99671 0.96852 1.21045 0.90195 0.98795 0.94720 1.98391 1.29911 1.75078 1.98394 1.19442 0.96601 1.02700 0.93464 1.18078 0.84761 0.78816 0.83567 1.90850 1.23270 1.43735 1.84551 1.45147 1.25543 1.53724 1.09189 1.21651 0.99400 1.02116 0.81879 1.23520 1.02886 0.93056 1.03164 1.23489 0.99224 1.01823 0.96328 1.21058 0.92233 0.99636 0.98268 0.93729 0.94082 0.95588 0.93938 0.91136 0.92677 0.76144 0.73551 0.85129 0.82948 0.74849 0.86070 0.87839 0.87381 0.86852 0.87075 0.80911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.51 71.98 0.61 -4.53 16 2 C -0.12 -5.63 5.45 30.59 0.17 -5.47 16 3 C 0.30 14.01 2.24 44.25 0.10 14.11 16 4 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 5 C -0.54 -26.79 8.73 25.60 0.22 -26.56 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -50.25 11.29 21.45 0.24 -50.01 16 9 Si 0.97 40.21 29.54 68.60 2.03 42.24 16 10 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 13 N -0.71 -25.59 5.03 -461.41 -2.32 -27.91 16 14 C 0.69 23.76 6.87 179.06 1.23 24.99 16 15 O -0.61 -25.93 11.17 -3.99 -0.04 -25.98 16 16 N -0.67 -15.59 5.35 -317.26 -1.70 -17.29 16 17 C 0.17 4.01 6.27 38.09 0.24 4.25 16 18 C -0.10 -2.61 8.65 22.44 0.19 -2.41 16 19 C -0.10 -2.36 9.81 22.24 0.22 -2.14 16 20 C -0.02 -0.47 6.35 22.61 0.14 -0.32 16 21 Cl -0.05 -1.23 26.01 -2.72 -0.07 -1.30 16 22 C -0.12 -2.57 5.87 -20.08 -0.12 -2.69 16 23 C 0.56 12.38 7.76 86.77 0.67 13.05 16 24 O -0.55 -15.64 13.52 -3.93 -0.05 -15.69 16 25 N -0.68 -10.00 5.52 -445.48 -2.46 -12.46 16 26 C 0.06 0.75 6.43 44.99 0.29 1.04 16 27 C -0.19 -1.78 10.46 30.62 0.32 -1.46 16 28 C -0.17 -1.34 10.46 30.62 0.32 -1.02 16 29 C -0.09 -1.59 9.45 22.66 0.21 -1.37 16 30 H 0.04 1.82 5.64 -2.39 -0.01 1.80 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 3.72 5.95 -2.39 -0.01 3.70 16 35 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 36 H 0.40 11.68 8.56 -92.70 -0.79 10.89 16 37 H 0.43 6.19 8.83 -92.71 -0.82 5.37 16 38 H 0.13 4.22 6.41 -2.91 -0.02 4.21 16 39 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.41 3.57 6.86 -92.70 -0.64 2.94 16 41 H 0.12 2.10 7.40 -2.39 -0.02 2.09 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.17 1.53 6.40 -2.91 -0.02 1.51 16 Total: -1.00 -69.21 391.78 -0.28 -69.49 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -1.18 Total: 28.14 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 5.27 Total: 10.76 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -6.23 Total: -107.66 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.10 Total: -41.67 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.07 Total: -1.30 kcal Total: -69.21 -0.28 -69.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097141415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.010 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds