Wall clock time and date at job start Tue Mar 31 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47327 * 2 1 4 4 H 1.08999 * 109.46656 * 305.66633 * 3 2 1 5 5 C 1.50698 * 109.47289 * 185.66636 * 3 2 1 6 6 H 1.07992 * 119.99865 * 275.36157 * 5 3 2 7 7 C 1.37881 * 119.99962 * 95.36291 * 5 3 2 8 8 N 1.31515 * 120.00182 * 185.80872 * 7 5 3 9 9 Si 1.86801 * 120.00000 * 5.81063 * 7 5 3 10 10 H 1.48511 * 109.47153 * 85.05194 * 9 7 5 11 11 H 1.48494 * 109.47485 * 205.05188 * 9 7 5 12 12 H 1.48498 * 109.47377 * 325.05541 * 9 7 5 13 13 N 1.46501 * 109.47034 * 65.66121 * 3 2 1 14 14 C 1.34773 * 120.00316 * 274.99847 * 13 3 2 15 15 O 1.21590 * 119.99925 * 0.28755 * 14 13 3 16 16 N 1.34777 * 119.99903 * 180.02562 * 14 13 3 17 17 C 1.40027 * 119.99861 * 174.90237 * 16 14 13 18 18 C 1.39009 * 119.98185 * 326.58582 * 17 16 14 19 19 C 1.38167 * 120.24984 * 179.72121 * 18 17 16 20 20 C 1.38183 * 120.20299 * 0.55754 * 19 18 17 21 21 Cl 1.73604 * 120.01805 * 179.74784 * 20 19 18 22 22 C 1.39694 * 119.96231 * 359.71437 * 20 19 18 23 23 C 1.47778 * 120.12521 * 179.97438 * 22 20 19 24 24 O 1.21557 * 120.00203 * 0.02562 * 23 22 20 25 25 N 1.34779 * 119.99779 * 180.02562 * 23 22 20 26 26 C 1.46502 * 119.99779 * 180.02562 * 25 23 22 27 27 C 1.53002 * 117.50000 * 223.74803 * 26 25 23 28 28 C 1.52996 * 117.49927 * 155.08466 * 26 25 23 29 29 C 1.38531 * 119.98403 * 146.86004 * 17 16 14 30 30 H 1.09001 * 109.46681 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47168 * 300.00621 * 1 2 3 32 32 H 1.08999 * 109.46573 * 60.01010 * 1 2 3 33 33 H 1.08998 * 109.47624 * 239.99138 * 2 1 3 34 34 H 1.09006 * 109.46949 * 119.99085 * 2 1 3 35 35 H 0.96996 * 119.99756 * 179.97438 * 8 7 5 36 36 H 0.97006 * 119.99569 * 95.01275 * 13 3 2 37 37 H 0.96997 * 120.00089 * 354.90690 * 16 14 13 38 38 H 1.08001 * 119.87722 * 359.97438 * 18 17 16 39 39 H 1.07996 * 119.89442 * 180.25414 * 19 18 17 40 40 H 0.96993 * 119.99856 * 0.02562 * 25 23 22 41 41 H 1.08999 * 115.54852 * 9.41730 * 26 25 23 42 42 H 1.08998 * 117.49447 * 359.97438 * 27 26 25 43 43 H 1.08999 * 117.50110 * 145.01788 * 27 26 25 44 44 H 1.09003 * 117.49910 * 214.97758 * 28 26 25 45 45 H 1.08992 * 117.49927 * 0.02562 * 28 26 25 46 46 H 1.08003 * 120.10077 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5962 1.9847 -0.8349 5 6 3.5405 1.4448 -0.1403 6 1 4.1646 1.3276 0.7332 7 6 4.1164 1.5965 -1.3838 8 7 5.4193 1.4846 -1.5232 9 14 3.0460 1.9612 -2.8707 10 1 2.8066 3.4241 -2.9615 11 1 3.7330 1.4947 -4.1017 12 1 1.7472 1.2550 -2.7308 13 7 1.6661 2.0926 1.2585 14 6 0.4503 2.6591 1.3891 15 8 -0.3384 2.6261 0.4642 16 7 0.1066 3.2577 2.5467 17 6 -1.1129 3.9385 2.6477 18 6 -1.6320 4.6016 1.5418 19 6 -2.8376 5.2703 1.6337 20 6 -3.5299 5.2940 2.8293 21 17 -5.0411 6.1412 2.9411 22 6 -3.0135 4.6353 3.9477 23 6 -3.7507 4.6589 5.2283 24 8 -4.8088 5.2518 5.3098 25 7 -3.2499 4.0229 6.3059 26 6 -3.9809 4.0458 7.5753 27 6 -3.1738 4.2951 8.8510 28 6 -3.7289 2.8992 8.5564 29 6 -1.7986 3.9557 3.8513 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 5.8244 1.5909 -2.3981 36 1 2.2939 2.1155 1.9977 37 1 0.7039 3.2169 3.3098 38 1 -1.0929 4.5906 0.6060 39 1 -3.2376 5.7801 0.7697 40 1 -2.4054 3.5502 6.2410 41 1 -4.9896 4.4565 7.5295 42 1 -2.0989 4.4417 8.7458 43 1 -3.6516 4.8695 9.6447 44 1 -4.5716 2.5559 9.1565 45 1 -3.0188 2.1282 8.2577 46 1 -1.3943 3.4443 4.7124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097141417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:21 Heat of formation + Delta-G solvation = -9.316287 kcal Electronic energy + Delta-G solvation = -29959.054243 eV Core-core repulsion = 25682.852783 eV Total energy + Delta-G solvation = -4276.201459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -40.82915 -40.02286 -38.57768 -37.31216 -36.51739 -35.55864 -34.35639 -33.42221 -32.48636 -31.56796 -31.16590 -29.28644 -27.43196 -24.83109 -23.21376 -22.86439 -22.82563 -22.23631 -21.28766 -20.49739 -19.82039 -18.61965 -18.42887 -17.09958 -16.77694 -16.61564 -16.23044 -15.76400 -15.30853 -15.17355 -14.94267 -14.71001 -14.40499 -14.30218 -13.93844 -13.59806 -13.43025 -13.06122 -12.85509 -12.79016 -12.54140 -12.06358 -12.03467 -11.98012 -11.93672 -11.74331 -11.62309 -11.29159 -11.02039 -10.93245 -10.80037 -10.76284 -10.25032 -10.01683 -9.90966 -9.81580 -9.64132 -9.33009 -9.27945 -9.08379 -8.79278 -8.31626 -7.99037 -6.33275 -4.37710 0.54224 0.95174 2.09785 2.55355 2.64350 2.87062 3.20619 3.28415 3.30698 3.34900 3.54225 3.73375 4.23978 4.28575 4.31486 4.41950 4.52051 4.55359 4.57433 4.94509 5.00706 5.06377 5.19251 5.22936 5.35099 5.44649 5.50097 5.61079 5.63046 5.94845 5.97973 6.02032 6.02743 6.12371 6.15753 6.24301 6.52320 6.68651 6.76744 6.84125 6.90174 7.03461 7.10745 7.23548 7.34622 7.45024 7.89999 8.12065 8.50427 8.67888 8.93995 9.28319 10.78068 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.002279 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.405564 B =12283.953454 C =13594.949385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.252 3.748 4 H 0.053 0.947 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.885 5.885 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.710 5.710 14 C 0.691 3.309 15 O -0.578 6.578 16 N -0.695 5.695 17 C 0.184 3.816 18 C -0.081 4.081 19 C -0.097 4.097 20 C -0.008 4.008 21 Cl -0.040 7.040 22 C -0.113 4.113 23 C 0.563 3.437 24 O -0.512 6.512 25 N -0.701 5.701 26 C 0.083 3.917 27 C -0.194 4.194 28 C -0.190 4.190 29 C -0.115 4.115 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.269 0.731 36 H 0.391 0.609 37 H 0.406 0.594 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.400 0.600 41 H 0.140 0.860 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.211 5.410 17.021 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.150 3.850 4 H 0.071 0.929 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.182 1.182 13 N -0.362 5.362 14 C 0.391 3.609 15 O -0.456 6.456 16 N -0.343 5.343 17 C 0.087 3.913 18 C -0.102 4.102 19 C -0.117 4.117 20 C -0.037 4.037 21 Cl -0.010 7.010 22 C -0.118 4.118 23 C 0.351 3.649 24 O -0.387 6.387 25 N -0.352 5.352 26 C -0.023 4.023 27 C -0.232 4.232 28 C -0.228 4.228 29 C -0.138 4.138 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.224 0.776 37 H 0.241 0.759 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.236 0.764 41 H 0.157 0.843 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.545 5.819 16.000 23.740 hybrid contribution 0.706 -0.153 -0.043 0.724 sum -15.839 5.666 15.958 23.187 Atomic orbital electron populations 1.21885 0.97291 0.98803 1.02067 1.22092 0.93740 0.99401 1.01283 1.19145 0.95370 0.88892 0.81607 0.92917 1.20978 0.88570 1.51906 0.95582 0.90338 1.24943 0.94889 0.93580 0.98826 1.69875 1.09912 1.47654 1.24662 0.86902 0.81304 0.79701 0.82133 1.19822 1.21154 1.18236 1.46051 1.12637 1.58357 1.19114 1.16215 0.83772 0.78732 0.82144 1.90912 1.50950 1.64595 1.39130 1.42928 1.19463 1.56361 1.15525 1.17397 0.86891 0.92983 0.94003 1.21503 0.95643 0.93360 0.99733 1.20981 0.94585 0.99841 0.96274 1.20889 0.90273 0.98397 0.94116 1.98398 1.29232 1.75155 1.98260 1.19281 0.96128 1.02855 0.93539 1.18058 0.85074 0.78673 0.83103 1.90861 1.21674 1.41988 1.84161 1.45284 1.25394 1.55037 1.09517 1.21589 0.97814 1.03073 0.79847 1.23452 1.00771 0.99257 0.99756 1.23405 1.04166 0.92269 1.02992 1.20836 0.93758 1.01266 0.97907 0.95187 0.93234 0.93042 0.91970 0.93054 0.92103 0.77566 0.75872 0.82841 0.83989 0.76391 0.84288 0.88418 0.87928 0.87788 0.88368 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.52 37.16 0.32 -2.38 16 2 C -0.13 -2.55 5.59 -26.73 -0.15 -2.70 16 3 C 0.25 5.48 1.92 -69.08 -0.13 5.35 16 4 H 0.05 1.26 4.67 -51.93 -0.24 1.02 16 5 C -0.53 -13.37 9.04 -34.44 -0.31 -13.68 16 6 H 0.08 2.08 8.06 -52.49 -0.42 1.66 16 7 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 8 N -0.89 -25.00 13.96 55.43 0.77 -24.23 16 9 Si 0.87 20.55 27.02 -169.99 -4.59 15.96 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.26 -5.97 6.77 56.52 0.38 -5.59 16 13 N -0.71 -12.53 5.03 -59.81 -0.30 -12.83 16 14 C 0.69 11.52 6.91 -86.92 -0.60 10.92 16 15 O -0.58 -11.42 11.15 5.29 0.06 -11.36 16 16 N -0.69 -8.41 5.35 -14.25 -0.08 -8.49 16 17 C 0.18 2.23 6.27 -83.72 -0.53 1.70 16 18 C -0.08 -1.07 8.65 -39.32 -0.34 -1.41 16 19 C -0.10 -1.16 9.81 -39.63 -0.39 -1.55 16 20 C -0.01 -0.10 6.35 -39.06 -0.25 -0.35 16 21 Cl -0.04 -0.51 26.01 -51.86 -1.35 -1.86 16 22 C -0.11 -1.30 5.87 -104.96 -0.62 -1.91 16 23 C 0.56 6.48 7.76 -12.36 -0.10 6.39 16 24 O -0.51 -7.29 13.52 5.32 0.07 -7.22 16 25 N -0.70 -5.82 5.52 -54.77 -0.30 -6.12 16 26 C 0.08 0.62 6.43 -67.93 -0.44 0.19 16 27 C -0.19 -1.10 10.46 -26.69 -0.28 -1.38 16 28 C -0.19 -1.04 10.46 -26.69 -0.28 -1.32 16 29 C -0.12 -1.14 9.45 -38.98 -0.37 -1.50 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.93 5.62 -51.93 -0.29 0.64 16 32 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.39 5.92 8.61 -40.82 -0.35 5.57 16 37 H 0.41 3.50 8.83 -40.82 -0.36 3.14 16 38 H 0.15 2.30 6.41 -52.49 -0.34 1.96 16 39 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.40 2.38 6.86 -40.82 -0.28 2.10 16 41 H 0.14 1.22 7.40 -51.93 -0.38 0.83 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.13 0.86 6.40 -52.48 -0.34 0.52 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -31.59 391.60 -10.32 -41.91 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.95 Total: 9.86 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -4.55 Total: -1.54 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.09 Total: -51.66 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.13 Total: -18.58 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.59 Total: 15.96 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.35 Total: -1.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.59 -10.32 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097141417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.593 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds