Wall clock time and date at job start Tue Mar 31 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47047 * 2 1 4 4 C 1.50696 * 109.46945 * 120.00150 * 2 1 3 5 5 H 1.08009 * 119.99787 * 119.99970 * 4 2 1 6 6 C 1.37873 * 120.00385 * 299.99378 * 4 2 1 7 7 N 1.31520 * 119.99720 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00135 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47230 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47311 * 120.00469 * 8 6 4 11 11 H 1.48511 * 109.47045 * 240.00464 * 8 6 4 12 12 N 1.46500 * 109.46579 * 240.00354 * 2 1 3 13 13 C 1.46503 * 119.99786 * 299.99452 * 12 2 1 14 14 S 1.65598 * 120.00182 * 120.00301 * 12 2 1 15 15 O 1.42100 * 106.40081 * 336.45490 * 14 12 2 16 16 O 1.42095 * 106.40330 * 203.53529 * 14 12 2 17 17 C 1.76204 * 107.21731 * 89.99398 * 14 12 2 18 18 C 1.38229 * 119.99860 * 114.72903 * 17 14 12 19 19 C 1.38213 * 120.03154 * 180.27703 * 18 17 14 20 20 C 1.38357 * 120.03945 * 359.97438 * 19 18 17 21 21 Br 1.89106 * 119.99364 * 180.02562 * 20 19 18 22 22 C 1.38261 * 120.00793 * 0.02562 * 20 19 18 23 23 C 1.38445 * 120.00507 * 295.00061 * 17 14 12 24 24 F 1.35102 * 120.01561 * 359.74929 * 23 17 14 25 25 H 1.09000 * 109.47101 * 59.99361 * 1 2 3 26 26 H 1.08995 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46840 * 300.00327 * 1 2 3 28 28 H 0.96994 * 119.99535 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47430 * 270.00314 * 13 12 2 30 30 H 1.08992 * 109.47117 * 30.00895 * 13 12 2 31 31 H 1.09002 * 109.46923 * 150.00313 * 13 12 2 32 32 H 1.07992 * 119.98329 * 0.26968 * 18 17 14 33 33 H 1.07995 * 119.97578 * 179.97438 * 19 18 17 34 34 H 1.08003 * 120.01475 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.1484 -2.2858 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1678 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 2.6903 1.4973 -2.1193 16 8 2.8226 -0.5645 -3.5259 17 6 4.6444 -0.1183 -1.7881 18 6 5.5126 -0.8312 -2.5936 19 6 6.8243 -1.0188 -2.2008 20 6 7.2701 -0.4929 -1.0012 21 35 9.0653 -0.7498 -0.4653 22 6 6.4031 0.2205 -0.1943 23 6 5.0889 0.4082 -0.5873 24 9 4.2406 1.1047 0.2005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7084 1.1608 3.4844 29 1 2.4156 -2.7377 -0.9718 30 1 0.6904 -2.3001 -0.9847 31 1 1.6236 -2.2852 -2.5002 32 1 5.1657 -1.2418 -3.5302 33 1 7.5017 -1.5763 -2.8306 34 1 6.7511 0.6314 0.7420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:39 Heat of formation + Delta-G solvation = -78.027310 kcal Electronic energy + Delta-G solvation = -23795.047602 eV Core-core repulsion = 20009.463629 eV Total energy + Delta-G solvation = -3785.583973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.79662 -39.08943 -36.81836 -36.23763 -35.41577 -32.73060 -32.63673 -30.88433 -29.63575 -29.10866 -25.67534 -25.16528 -23.28580 -22.92962 -20.80259 -18.83355 -17.79792 -17.13956 -16.71317 -16.59050 -16.35979 -15.41850 -15.22006 -15.04256 -14.55709 -14.28804 -13.60853 -13.39993 -13.28870 -13.09197 -12.81646 -12.58312 -12.02954 -11.89099 -11.80880 -11.66814 -11.41258 -11.20188 -11.17313 -11.03928 -10.85996 -10.66892 -10.64274 -10.46749 -10.26006 -10.06248 -9.36853 -9.23702 -8.92102 -8.48927 -8.04230 -6.10275 -4.18068 0.35304 0.85984 0.98354 1.19469 3.02381 3.22161 3.31157 3.32955 3.51740 4.03673 4.17692 4.34057 4.38914 4.67189 4.88777 5.15196 5.21109 5.29997 5.45893 5.61442 5.75086 5.77649 5.80575 6.11778 6.27558 6.52500 6.57904 6.80553 6.84439 7.06925 7.38951 7.60367 7.76363 8.01185 8.23049 8.83917 9.48208 10.95162 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.011232 B = 0.004742 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.308401 B = 5903.191733 C = 7642.102387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.262 3.738 3 H 0.067 0.933 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.890 3.110 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.975 5.975 13 C 0.096 3.904 14 S 2.684 3.316 15 O -0.946 6.946 16 O -0.970 6.970 17 C -0.705 4.705 18 C 0.009 3.991 19 C -0.135 4.135 20 C -0.018 4.018 21 Br -0.035 7.035 22 C -0.155 4.155 23 C 0.227 3.773 24 F -0.086 7.086 25 H 0.014 0.986 26 H 0.034 0.966 27 H 0.095 0.905 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.428 -4.528 -7.649 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.085 0.915 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.718 3.282 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.816 5.816 13 C -0.050 4.050 14 S 2.771 3.229 15 O -0.937 6.937 16 O -0.960 6.960 17 C -0.789 4.789 18 C -0.011 4.011 19 C -0.156 4.156 20 C -0.098 4.098 21 Br 0.051 6.949 22 C -0.176 4.176 23 C 0.205 3.795 24 F -0.064 7.064 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.176 0.824 33 H 0.163 0.837 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.758 -4.006 -7.969 16.396 hybrid contribution 0.479 -0.618 1.605 1.785 sum 14.238 -4.624 -6.364 16.267 Atomic orbital electron populations 1.22080 0.97660 0.99742 1.01020 1.18935 0.91993 0.93230 0.79855 0.91497 1.21328 1.31891 1.12879 0.90076 0.92121 1.24858 0.94926 0.94884 0.98802 1.69877 1.36200 1.22531 1.23668 0.86565 0.78744 0.79681 0.83174 1.19852 1.20937 1.20908 1.57413 1.62186 1.21880 1.40110 1.21348 1.02180 0.81228 1.00203 1.02312 0.73012 0.74147 0.73475 1.93604 1.83044 1.30894 1.86112 1.93499 1.85641 1.75784 1.41106 1.31658 1.29025 1.13610 1.04590 1.20853 0.91636 0.90873 0.97738 1.21196 0.96734 1.01945 0.95710 1.21794 0.91652 0.99592 0.96737 1.96765 1.10868 1.96019 1.91267 1.21172 0.92097 1.02414 1.01904 1.16965 0.87444 0.88345 0.86708 1.91822 1.68474 1.74305 1.71761 0.96682 0.94712 0.88648 0.92685 0.93668 0.90045 0.91693 0.82429 0.83725 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.95 37.16 0.33 -3.02 16 2 C 0.26 6.24 1.94 -69.08 -0.13 6.11 16 3 H 0.07 1.77 5.87 -51.93 -0.30 1.46 16 4 C -0.52 -13.11 7.84 -34.44 -0.27 -13.38 16 5 H 0.06 1.51 7.65 -52.48 -0.40 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -23.93 11.32 55.43 0.63 -23.30 16 8 Si 0.89 20.31 29.54 -169.99 -5.02 15.28 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.97 -19.74 3.06 -115.85 -0.35 -20.09 16 13 C 0.10 1.64 9.90 59.85 0.59 2.23 16 14 S 2.68 51.79 5.34 -107.50 -0.57 51.21 16 15 O -0.95 -21.20 15.99 -57.17 -0.91 -22.12 16 16 O -0.97 -18.22 15.57 -57.17 -0.89 -19.11 16 17 C -0.71 -12.00 5.91 -39.51 -0.23 -12.24 16 18 C 0.01 0.12 9.55 -39.59 -0.38 -0.26 16 19 C -0.14 -1.61 9.79 -39.55 -0.39 -1.99 16 20 C -0.02 -0.23 6.22 -39.53 -0.25 -0.47 16 21 Br -0.04 -0.38 33.70 -68.01 -2.29 -2.67 16 22 C -0.15 -2.31 9.77 -39.49 -0.39 -2.70 16 23 C 0.23 4.07 7.21 -39.42 -0.28 3.79 16 24 F -0.09 -1.83 13.95 2.25 0.03 -1.80 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 27 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.36 6.43 -51.93 -0.33 1.03 16 31 H 0.06 0.97 7.02 -51.93 -0.36 0.61 16 32 H 0.16 1.80 7.33 -52.49 -0.38 1.41 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.15 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -29.40 319.90 -9.33 -38.73 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.28 Total: -0.71 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -1.49 Total: -20.26 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.27 Total: -43.39 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.80 Total: -41.22 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.03 Total: -1.80 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 51.79 SS G_CDS: -0.57 Total: 51.21 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.29 Total: -2.67 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.40 -9.33 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.296 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds