Wall clock time and date at job start Tue Mar 31 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47047 * 2 1 4 4 C 1.50696 * 109.46945 * 120.00150 * 2 1 3 5 5 H 1.08009 * 119.99787 * 119.99970 * 4 2 1 6 6 C 1.37873 * 120.00385 * 299.99378 * 4 2 1 7 7 N 1.31520 * 119.99720 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00135 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47230 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47311 * 120.00469 * 8 6 4 11 11 H 1.48511 * 109.47045 * 240.00464 * 8 6 4 12 12 N 1.46500 * 109.46579 * 240.00354 * 2 1 3 13 13 C 1.46503 * 119.99786 * 299.99452 * 12 2 1 14 14 S 1.65598 * 120.00182 * 120.00301 * 12 2 1 15 15 O 1.42100 * 106.40081 * 336.45490 * 14 12 2 16 16 O 1.42095 * 106.40330 * 203.53529 * 14 12 2 17 17 C 1.76204 * 107.21731 * 89.99398 * 14 12 2 18 18 C 1.38229 * 119.99860 * 114.72903 * 17 14 12 19 19 C 1.38213 * 120.03154 * 180.27703 * 18 17 14 20 20 C 1.38357 * 120.03945 * 359.97438 * 19 18 17 21 21 Br 1.89106 * 119.99364 * 180.02562 * 20 19 18 22 22 C 1.38261 * 120.00793 * 0.02562 * 20 19 18 23 23 C 1.38445 * 120.00507 * 295.00061 * 17 14 12 24 24 F 1.35102 * 120.01561 * 359.74929 * 23 17 14 25 25 H 1.09000 * 109.47101 * 59.99361 * 1 2 3 26 26 H 1.08995 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46840 * 300.00327 * 1 2 3 28 28 H 0.96994 * 119.99535 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47430 * 270.00314 * 13 12 2 30 30 H 1.08992 * 109.47117 * 30.00895 * 13 12 2 31 31 H 1.09002 * 109.46923 * 150.00313 * 13 12 2 32 32 H 1.07992 * 119.98329 * 0.26968 * 18 17 14 33 33 H 1.07995 * 119.97578 * 179.97438 * 19 18 17 34 34 H 1.08003 * 120.01475 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.1484 -2.2858 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1678 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 2.6903 1.4973 -2.1193 16 8 2.8226 -0.5645 -3.5259 17 6 4.6444 -0.1183 -1.7881 18 6 5.5126 -0.8312 -2.5936 19 6 6.8243 -1.0188 -2.2008 20 6 7.2701 -0.4929 -1.0012 21 35 9.0653 -0.7498 -0.4653 22 6 6.4031 0.2205 -0.1943 23 6 5.0889 0.4082 -0.5873 24 9 4.2406 1.1047 0.2005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7084 1.1608 3.4844 29 1 2.4156 -2.7377 -0.9718 30 1 0.6904 -2.3001 -0.9847 31 1 1.6236 -2.2852 -2.5002 32 1 5.1657 -1.2418 -3.5302 33 1 7.5017 -1.5763 -2.8306 34 1 6.7511 0.6314 0.7420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097163088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:39 Heat of formation + Delta-G solvation = -96.325044 kcal Electronic energy + Delta-G solvation = -23795.841051 eV Core-core repulsion = 20009.463629 eV Total energy + Delta-G solvation = -3786.377422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.22281 -40.21253 -38.39094 -37.92426 -37.00307 -34.50855 -33.80551 -32.00494 -30.92110 -30.68474 -27.30684 -26.99155 -24.42734 -24.12238 -22.59197 -20.23623 -19.24926 -18.60255 -18.34642 -18.00451 -17.86335 -16.93684 -16.81597 -16.30084 -16.17375 -15.41770 -15.27080 -14.86222 -14.72828 -14.52609 -14.19580 -13.73873 -13.67767 -13.46579 -13.26029 -13.19914 -12.96022 -12.93273 -12.77101 -12.60466 -12.29357 -12.19286 -12.15494 -11.97478 -11.84333 -11.54958 -11.11992 -10.47349 -10.39155 -10.08566 -9.68426 -8.06882 -6.19669 -0.85427 -0.58372 -0.14560 0.18588 1.41265 1.44624 1.53334 1.80388 2.10595 2.45502 2.59973 2.92497 3.16441 3.22634 3.51473 3.76383 3.94559 4.12630 4.21021 4.34046 4.65124 4.67400 4.76043 4.77690 4.83231 4.98377 5.04013 5.17933 5.19189 5.39599 5.63234 5.71202 5.88618 6.10381 6.30817 6.87468 7.48928 8.98379 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.011232 B = 0.004742 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.308401 B = 5903.191733 C = 7642.102387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.269 3.731 3 H 0.034 0.966 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.021 3.979 7 N -0.915 5.915 8 Si 0.947 3.053 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.281 1.281 12 N -0.985 5.985 13 C 0.090 3.910 14 S 2.693 3.307 15 O -0.988 6.988 16 O -0.967 6.967 17 C -0.715 4.715 18 C 0.012 3.988 19 C -0.115 4.115 20 C -0.018 4.018 21 Br -0.006 7.006 22 C -0.158 4.158 23 C 0.190 3.810 24 F -0.118 7.118 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.262 0.738 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.187 0.813 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.769 -6.811 -8.582 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.051 0.949 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.178 4.178 7 N -0.555 5.555 8 Si 0.773 3.227 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.206 1.206 12 N -0.825 5.825 13 C -0.055 4.055 14 S 2.784 3.216 15 O -0.978 6.978 16 O -0.957 6.957 17 C -0.802 4.802 18 C -0.008 4.008 19 C -0.136 4.136 20 C -0.098 4.098 21 Br 0.080 6.920 22 C -0.179 4.179 23 C 0.168 3.832 24 F -0.096 7.096 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.201 0.799 33 H 0.205 0.795 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 16.066 -6.310 -8.926 19.432 hybrid contribution -0.056 0.046 1.799 1.801 sum 16.010 -6.264 -7.126 18.610 Atomic orbital electron populations 1.21973 0.97519 1.00353 1.00200 1.18561 0.92093 0.91898 0.80978 0.94862 1.21501 1.31117 1.12503 0.90584 0.91981 1.25550 0.95312 0.95545 1.01420 1.70007 1.37544 1.23911 1.24041 0.85683 0.78217 0.78742 0.80069 1.18987 1.21269 1.20639 1.57288 1.63259 1.23031 1.38893 1.21573 1.02534 0.79595 1.01819 1.01669 0.73609 0.73098 0.73197 1.93551 1.84240 1.33439 1.86607 1.93489 1.86125 1.75382 1.40723 1.31264 1.27886 1.15732 1.05362 1.21248 0.91927 0.89705 0.97936 1.21681 0.96381 1.00271 0.95230 1.22068 0.92747 0.98344 0.96668 1.96810 1.08215 1.95740 1.91198 1.21309 0.91225 1.02668 1.02691 1.17337 0.88428 0.90014 0.87375 1.91742 1.69667 1.75455 1.72752 0.95911 0.93284 0.91059 0.92849 0.92485 0.90074 0.89489 0.79928 0.79543 0.82120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.66 8.95 71.98 0.64 -6.01 16 2 C 0.27 13.13 1.94 44.25 0.09 13.21 16 3 H 0.03 1.87 5.87 -2.39 -0.01 1.85 16 4 C -0.52 -26.29 7.84 25.60 0.20 -26.09 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.04 16 6 C 0.02 1.13 5.30 84.65 0.45 1.57 16 7 N -0.92 -51.03 11.32 21.45 0.24 -50.78 16 8 Si 0.95 41.85 29.54 68.60 2.03 43.87 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 N -0.98 -39.95 3.06 -520.45 -1.59 -41.54 16 13 C 0.09 2.92 9.90 127.77 1.27 4.19 16 14 S 2.69 104.25 5.34 -56.49 -0.30 103.95 16 15 O -0.99 -46.11 15.99 -128.00 -2.05 -48.16 16 16 O -0.97 -35.01 15.57 -128.00 -1.99 -37.00 16 17 C -0.71 -23.80 5.91 22.32 0.13 -23.67 16 18 C 0.01 0.28 9.55 22.26 0.21 0.49 16 19 C -0.12 -2.27 9.79 22.29 0.22 -2.05 16 20 C -0.02 -0.41 6.22 22.30 0.14 -0.27 16 21 Br -0.01 -0.11 33.70 -20.37 -0.69 -0.79 16 22 C -0.16 -4.55 9.77 22.33 0.22 -4.33 16 23 C 0.19 6.86 7.21 22.37 0.16 7.02 16 24 F -0.12 -5.27 13.95 44.97 0.63 -4.65 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 2.11 6.66 -2.39 -0.02 2.09 16 27 H 0.07 3.73 6.07 -2.38 -0.01 3.71 16 28 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.62 6.43 -2.39 -0.02 2.61 16 31 H 0.09 2.42 7.02 -2.39 -0.02 2.41 16 32 H 0.18 3.46 7.33 -2.91 -0.02 3.44 16 33 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -65.00 319.90 1.14 -63.86 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.14 Total: 7.19 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 3.73 Total: -35.93 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -1.35 Total: -92.33 kcal Atomic # 8 Polarization: -81.13 SS G_CDS: -4.04 Total: -85.17 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.63 Total: -4.65 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 104.25 SS G_CDS: -0.30 Total: 103.95 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -0.69 Total: -0.79 kcal Total: -65.00 1.14 -63.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.469 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds