Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 S 1.65599 * 120.00127 * 239.99852 * 12 2 1 15 15 O 1.42095 * 106.40120 * 203.53802 * 14 12 2 16 16 O 1.42089 * 106.40564 * 336.46237 * 14 12 2 17 17 C 1.76207 * 107.21538 * 90.00003 * 14 12 2 18 18 C 1.38226 * 120.00070 * 114.72167 * 17 14 12 19 19 C 1.38210 * 120.03070 * 179.71878 * 18 17 14 20 20 C 1.38350 * 120.04187 * 0.55854 * 19 18 17 21 21 Br 1.89104 * 119.99749 * 179.74145 * 20 19 18 22 22 C 1.38266 * 120.00652 * 359.72095 * 20 19 18 23 23 C 1.38442 * 120.00125 * 295.00031 * 17 14 12 24 24 F 1.35097 * 120.02447 * 0.02606 * 23 17 14 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 30 30 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 31 31 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 32 32 H 1.07996 * 119.98379 * 0.02562 * 18 17 14 33 33 H 1.07998 * 119.97573 * 180.25681 * 19 18 17 34 34 H 1.08004 * 120.01774 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.7119 -0.8790 2.9813 16 8 3.5794 1.1829 1.5749 17 6 1.8961 0.8534 3.4711 18 6 1.9283 0.4360 4.7884 19 6 1.0900 1.0195 5.7195 20 6 0.2096 2.0139 5.3319 21 35 -0.9420 2.8062 6.6055 22 6 0.1720 2.4286 4.0134 23 6 1.0158 1.8483 3.0815 24 9 0.9796 2.2524 1.7929 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 2.4158 -2.7377 0.9716 30 1 1.6239 -2.2853 2.5001 31 1 0.6905 -2.3002 0.9845 32 1 2.6123 -0.3429 5.0912 33 1 1.1187 0.6956 6.7494 34 1 -0.5149 3.2052 3.7107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = -77.573930 kcal Electronic energy + Delta-G solvation = -23573.957329 eV Core-core repulsion = 19788.393016 eV Total energy + Delta-G solvation = -3785.564313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.10903 -39.24497 -36.79916 -36.24147 -35.38391 -32.86455 -32.61551 -31.04842 -29.76192 -29.13182 -25.67910 -25.17100 -23.43365 -23.09446 -20.79764 -18.88400 -17.91414 -17.23344 -16.98321 -16.61615 -16.25166 -15.73387 -15.22916 -15.15634 -14.52817 -14.43460 -13.66504 -13.56789 -13.29276 -13.27119 -12.79877 -12.66430 -12.07149 -11.96546 -11.81205 -11.63721 -11.40704 -11.29620 -11.25949 -10.99662 -10.82546 -10.76474 -10.74417 -10.44513 -10.27770 -10.02779 -9.45374 -9.25847 -9.11551 -8.45868 -8.04909 -6.07244 -4.14201 0.20901 0.79910 0.80906 1.07108 2.88322 3.28224 3.36471 3.40117 3.52160 3.90404 4.09525 4.25677 4.40104 4.54668 4.78016 5.04541 5.15759 5.24189 5.30688 5.51263 5.61233 5.63142 5.66483 6.09020 6.29410 6.35880 6.57085 6.74094 6.77629 7.00684 7.37412 7.62023 7.77889 8.02691 8.25490 8.88056 9.51430 10.98449 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.003286 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.178447 B = 8518.658049 C = 9260.666999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.068 0.932 4 C -0.520 4.520 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.975 5.975 13 C 0.106 3.894 14 S 2.679 3.321 15 O -0.966 6.966 16 O -0.938 6.938 17 C -0.705 4.705 18 C 0.009 3.991 19 C -0.130 4.130 20 C -0.020 4.020 21 Br -0.032 7.032 22 C -0.151 4.151 23 C 0.214 3.786 24 F -0.098 7.098 25 H 0.009 0.991 26 H 0.033 0.967 27 H 0.095 0.905 28 H 0.263 0.737 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 1.945 19.215 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.085 0.915 4 C -0.560 4.560 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.816 5.816 13 C -0.040 4.040 14 S 2.765 3.235 15 O -0.956 6.956 16 O -0.928 6.928 17 C -0.787 4.787 18 C -0.011 4.011 19 C -0.150 4.150 20 C -0.100 4.100 21 Br 0.054 6.946 22 C -0.173 4.173 23 C 0.192 3.808 24 F -0.075 7.075 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.807 2.465 19.542 20.275 hybrid contribution -0.322 -0.264 -1.027 1.108 sum -5.128 2.202 18.515 19.338 Atomic orbital electron populations 1.22142 0.98210 0.99655 1.00771 1.18928 0.91425 0.93511 0.80035 0.91460 1.21343 1.31745 1.13059 0.89818 0.91742 1.24903 0.94954 0.95002 0.98976 1.69871 1.36459 1.22618 1.23714 0.86436 0.78602 0.79674 0.82671 1.19688 1.21006 1.20867 1.57454 1.70351 1.19577 1.34222 1.21245 1.02140 0.81506 0.99108 1.02596 0.74272 0.73864 0.72758 1.93513 1.68090 1.58884 1.75140 1.93621 1.72810 1.55828 1.70548 1.31868 1.19624 1.12126 1.15080 1.20906 0.94851 0.95696 0.89617 1.21261 0.96185 0.96528 1.01073 1.21817 0.96975 0.97888 0.93343 1.96787 1.62149 1.81278 1.54337 1.21163 1.01590 1.03011 0.91495 1.16966 0.92862 0.91457 0.79502 1.91760 1.94575 1.88462 1.32727 0.97206 0.94758 0.88655 0.92710 0.92642 0.93033 0.90641 0.82210 0.83530 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.75 37.16 0.33 -3.01 16 2 C 0.26 6.37 1.92 -69.08 -0.13 6.23 16 3 H 0.07 1.81 5.87 -51.93 -0.30 1.50 16 4 C -0.52 -13.81 8.37 -34.44 -0.29 -14.10 16 5 H 0.06 1.70 7.65 -52.49 -0.40 1.29 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.52 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.97 -19.96 3.06 -115.85 -0.35 -20.32 16 13 C 0.11 1.81 9.53 59.85 0.57 2.38 16 14 S 2.68 52.07 5.29 -107.50 -0.57 51.50 16 15 O -0.97 -18.57 16.04 -57.18 -0.92 -19.48 16 16 O -0.94 -21.68 15.99 -57.18 -0.91 -22.60 16 17 C -0.70 -11.22 5.91 -39.51 -0.23 -11.46 16 18 C 0.01 0.11 9.55 -39.60 -0.38 -0.26 16 19 C -0.13 -1.38 9.79 -39.55 -0.39 -1.77 16 20 C -0.02 -0.23 6.22 -39.53 -0.25 -0.47 16 21 Br -0.03 -0.29 33.70 -68.01 -2.29 -2.59 16 22 C -0.15 -1.97 9.77 -39.49 -0.39 -2.36 16 23 C 0.21 3.45 7.21 -39.42 -0.28 3.17 16 24 F -0.10 -1.85 13.14 2.25 0.03 -1.82 16 25 H 0.01 0.18 7.01 -51.93 -0.36 -0.18 16 26 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.72 7.79 -51.92 -0.40 0.31 16 31 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 32 H 0.16 1.70 7.33 -52.49 -0.38 1.32 16 33 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -30.66 319.10 -9.39 -40.06 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -3.26 Total: -1.53 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -1.53 Total: -20.02 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.27 Total: -44.21 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.83 Total: -42.08 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.03 Total: -1.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.57 Total: 51.50 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.29 Total: -2.59 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.66 -9.39 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.517 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds