Wall clock time and date at job start Tue Mar 31 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 S 1.65599 * 120.00127 * 239.99852 * 12 2 1 15 15 O 1.42095 * 106.40120 * 203.53802 * 14 12 2 16 16 O 1.42089 * 106.40564 * 336.46237 * 14 12 2 17 17 C 1.76207 * 107.21538 * 90.00003 * 14 12 2 18 18 C 1.38226 * 120.00070 * 114.72167 * 17 14 12 19 19 C 1.38210 * 120.03070 * 179.71878 * 18 17 14 20 20 C 1.38350 * 120.04187 * 0.55854 * 19 18 17 21 21 Br 1.89104 * 119.99749 * 179.74145 * 20 19 18 22 22 C 1.38266 * 120.00652 * 359.72095 * 20 19 18 23 23 C 1.38442 * 120.00125 * 295.00031 * 17 14 12 24 24 F 1.35097 * 120.02447 * 0.02606 * 23 17 14 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 30 30 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 31 31 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 32 32 H 1.07996 * 119.98379 * 0.02562 * 18 17 14 33 33 H 1.07998 * 119.97573 * 180.25681 * 19 18 17 34 34 H 1.08004 * 120.01774 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.7119 -0.8790 2.9813 16 8 3.5794 1.1829 1.5749 17 6 1.8961 0.8534 3.4711 18 6 1.9283 0.4360 4.7884 19 6 1.0900 1.0195 5.7195 20 6 0.2096 2.0139 5.3319 21 35 -0.9420 2.8062 6.6055 22 6 0.1720 2.4286 4.0134 23 6 1.0158 1.8483 3.0815 24 9 0.9796 2.2524 1.7929 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 2.4158 -2.7377 0.9716 30 1 1.6239 -2.2853 2.5001 31 1 0.6905 -2.3002 0.9845 32 1 2.6123 -0.3429 5.0912 33 1 1.1187 0.6956 6.7494 34 1 -0.5149 3.2052 3.7107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097163089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:41 Heat of formation + Delta-G solvation = -97.415587 kcal Electronic energy + Delta-G solvation = -23574.817727 eV Core-core repulsion = 19788.393016 eV Total energy + Delta-G solvation = -3786.424712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.39776 -40.26536 -38.39531 -37.93972 -36.99557 -34.54646 -33.83782 -32.05652 -30.93819 -30.72366 -27.30922 -27.04310 -24.48581 -24.18443 -22.58619 -20.24839 -19.33311 -18.72401 -18.38255 -18.00314 -17.85976 -17.08079 -16.89388 -16.29345 -16.23148 -15.45047 -15.28541 -14.89338 -14.81417 -14.54604 -14.19373 -13.76912 -13.73624 -13.41687 -13.25353 -13.17434 -12.99949 -12.98848 -12.80115 -12.59730 -12.32108 -12.21764 -12.14528 -12.03375 -11.82713 -11.55009 -11.12899 -10.50122 -10.41917 -10.15013 -9.71257 -8.10382 -6.24382 -0.90565 -0.63901 -0.20124 0.17441 1.42681 1.45418 1.56051 1.78131 2.10842 2.44776 2.61203 2.83330 3.12205 3.18250 3.48678 3.73474 3.89837 4.06650 4.16283 4.28488 4.61783 4.63010 4.68421 4.74695 4.84355 4.95322 5.01311 5.13696 5.18498 5.34202 5.61682 5.69145 5.87809 6.11244 6.29485 6.83462 7.44421 8.94219 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.003286 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.178447 B = 8518.658049 C = 9260.666999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.033 0.967 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.986 5.986 13 C 0.097 3.903 14 S 2.688 3.312 15 O -0.969 6.969 16 O -0.988 6.988 17 C -0.712 4.712 18 C 0.011 3.989 19 C -0.110 4.110 20 C -0.019 4.019 21 Br -0.003 7.003 22 C -0.149 4.149 23 C 0.182 3.818 24 F -0.125 7.125 25 H 0.027 0.973 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.264 0.736 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.182 0.818 33 H 0.188 0.812 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 1.038 21.862 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.051 0.949 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.192 1.192 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.826 5.826 13 C -0.048 4.048 14 S 2.779 3.221 15 O -0.959 6.959 16 O -0.978 6.978 17 C -0.800 4.800 18 C -0.009 4.009 19 C -0.130 4.130 20 C -0.099 4.099 21 Br 0.083 6.917 22 C -0.170 4.170 23 C 0.160 3.840 24 F -0.103 7.103 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.199 0.801 33 H 0.205 0.795 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.659 1.514 22.164 22.925 hybrid contribution -0.104 0.075 -1.605 1.610 sum -5.762 1.589 20.559 21.411 Atomic orbital electron populations 1.21920 0.97084 1.00079 1.00284 1.18525 0.92137 0.91851 0.80824 0.94941 1.21681 1.31742 1.13102 0.91252 0.92171 1.25653 0.95207 0.95701 1.01696 1.69997 1.37306 1.23696 1.24281 0.85527 0.78263 0.78611 0.79350 1.19197 1.20015 1.21066 1.57307 1.70347 1.20974 1.33994 1.21484 1.02136 0.79649 1.01485 1.01834 0.74277 0.73128 0.72822 1.93494 1.68683 1.58882 1.74874 1.93558 1.74664 1.57268 1.72340 1.31245 1.19999 1.13211 1.15499 1.21251 0.95330 0.95991 0.88281 1.21712 0.94083 0.94850 1.02405 1.22096 0.97051 0.97584 0.93179 1.96839 1.61216 1.80885 1.52714 1.21330 1.00961 1.02938 0.91735 1.17304 0.94670 0.92909 0.79120 1.91693 1.94961 1.88962 1.34719 0.95352 0.93688 0.91399 0.92655 0.93069 0.89534 0.90216 0.80079 0.79477 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 8.75 71.98 0.63 -5.54 16 2 C 0.27 13.52 1.92 44.25 0.09 13.60 16 3 H 0.03 1.86 5.87 -2.39 -0.01 1.85 16 4 C -0.54 -29.35 8.37 25.60 0.21 -29.14 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -51.96 11.32 21.45 0.24 -51.71 16 8 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.99 -40.93 3.06 -520.44 -1.59 -42.52 16 13 C 0.10 3.26 9.53 127.77 1.22 4.47 16 14 S 2.69 105.91 5.29 -56.49 -0.30 105.61 16 15 O -0.97 -36.59 16.04 -128.00 -2.05 -38.64 16 16 O -0.99 -48.02 15.99 -128.00 -2.05 -50.07 16 17 C -0.71 -22.10 5.91 22.32 0.13 -21.97 16 18 C 0.01 0.25 9.55 22.26 0.21 0.46 16 19 C -0.11 -1.88 9.79 22.29 0.22 -1.66 16 20 C -0.02 -0.36 6.22 22.30 0.14 -0.22 16 21 Br 0.00 -0.04 33.70 -20.37 -0.69 -0.73 16 22 C -0.15 -3.63 9.77 22.33 0.22 -3.41 16 23 C 0.18 5.84 7.21 22.37 0.16 6.00 16 24 F -0.13 -4.99 13.14 44.97 0.59 -4.40 16 25 H 0.03 1.15 7.01 -2.39 -0.02 1.13 16 26 H 0.04 1.90 6.66 -2.39 -0.02 1.89 16 27 H 0.07 3.51 6.07 -2.38 -0.01 3.49 16 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 2.24 7.79 -2.38 -0.02 2.22 16 31 H 0.08 2.57 6.43 -2.39 -0.02 2.55 16 32 H 0.18 3.20 7.33 -2.91 -0.02 3.18 16 33 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -68.80 319.10 1.00 -67.79 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.15 Total: 5.19 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.68 Total: -36.01 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -1.35 Total: -94.24 kcal Atomic # 8 Polarization: -84.61 SS G_CDS: -4.10 Total: -88.71 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.59 Total: -4.40 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 105.91 SS G_CDS: -0.30 Total: 105.61 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -0.69 Total: -0.73 kcal Total: -68.80 1.00 -67.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.621 kcal (2) G-P(sol) polarization free energy of solvation -68.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds