Wall clock time and date at job start Tue Mar 31 2020 06:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46781 * 2 1 4 4 H 1.08997 * 109.47578 * 55.66987 * 3 2 1 5 5 C 1.50703 * 109.46809 * 175.66952 * 3 2 1 6 6 H 1.07998 * 120.00011 * 114.14516 * 5 3 2 7 7 C 1.37875 * 120.00178 * 294.13904 * 5 3 2 8 8 N 1.31507 * 120.00184 * 155.55008 * 7 5 3 9 9 Si 1.86807 * 119.99894 * 335.55058 * 7 5 3 10 10 H 1.48494 * 109.46973 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47071 * 299.99683 * 9 7 5 12 12 H 1.48502 * 109.47040 * 59.99799 * 9 7 5 13 13 N 1.46498 * 109.47400 * 295.66632 * 3 2 1 14 14 C 1.34777 * 119.99985 * 85.00037 * 13 3 2 15 15 O 1.21592 * 119.99649 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00269 * 180.02562 * 14 13 3 17 17 C 1.39994 * 119.99854 * 184.91279 * 16 14 13 18 18 C 1.38734 * 120.04367 * 21.24654 * 17 16 14 19 19 C 1.38739 * 119.87493 * 179.81763 * 18 17 16 20 20 N 1.39972 * 120.02212 * 180.23054 * 19 18 17 21 21 C 1.46768 * 124.35115 * 5.43879 * 20 19 18 22 22 C 1.54658 * 105.37925 * 162.85446 * 21 20 19 23 23 C 1.54632 * 101.68561 * 25.76738 * 22 21 20 24 24 C 1.34424 * 124.34827 * 185.74081 * 20 19 18 25 25 O 1.21286 * 124.94000 * 0.37926 * 24 20 19 26 26 C 1.38918 * 119.95250 * 0.42922 * 19 18 17 27 27 C 1.38158 * 120.07397 * 359.79985 * 26 19 18 28 28 C 1.38253 * 120.12786 * 359.97438 * 27 26 19 29 29 Cl 1.73602 * 119.97773 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47661 * 300.00278 * 1 2 3 32 32 H 1.09000 * 109.46997 * 60.00640 * 1 2 3 33 33 H 1.08997 * 109.47732 * 240.00252 * 2 1 3 34 34 H 1.09000 * 109.46997 * 119.99360 * 2 1 3 35 35 H 0.96998 * 120.00231 * 354.91526 * 8 7 5 36 36 H 0.96999 * 120.00392 * 265.00474 * 13 3 2 37 37 H 0.97001 * 119.99411 * 4.90629 * 16 14 13 38 38 H 1.08001 * 120.06029 * 359.97438 * 18 17 16 39 39 H 1.08992 * 110.24327 * 281.98496 * 21 20 19 40 40 H 1.09001 * 110.24551 * 43.98413 * 21 20 19 41 41 H 1.09003 * 111.19506 * 267.58961 * 22 21 20 42 42 H 1.09001 * 110.81817 * 143.77548 * 22 21 20 43 43 H 1.09003 * 110.48340 * 216.30490 * 23 22 21 44 44 H 1.09004 * 110.48463 * 93.66440 * 23 22 21 45 45 H 1.07993 * 119.96325 * 179.76700 * 26 19 18 46 46 H 1.08005 * 119.93324 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6146 1.9783 0.8486 5 6 3.5431 1.4439 0.1073 6 1 4.1428 1.8054 -0.7149 7 6 4.1528 0.9838 1.2551 8 7 5.3863 0.5303 1.2081 9 14 3.2265 1.0046 2.8773 10 1 4.0965 0.4610 3.9510 11 1 2.8420 2.3998 3.2099 12 1 2.0046 0.1688 2.7603 13 7 1.6387 2.1024 -1.2449 14 6 0.4202 2.6697 -1.3445 15 8 -0.3459 2.6342 -0.4009 16 7 0.0507 3.2763 -2.4899 17 6 -1.1721 3.9542 -2.5601 18 6 -1.7936 4.3879 -1.3981 19 6 -3.0035 5.0627 -1.4719 20 7 -3.6308 5.5059 -0.3018 21 6 -3.0432 5.4110 1.0398 22 6 -3.8595 6.3903 1.9153 23 6 -5.2092 6.4334 1.1620 24 6 -4.8513 6.0678 -0.2616 25 8 -5.5619 6.2550 -1.2265 26 6 -3.5940 5.2946 -2.7078 27 6 -2.9757 4.8577 -3.8634 28 6 -1.7676 4.1890 -3.7939 29 17 -0.9944 3.6411 -5.2484 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 5.8415 0.4504 0.3553 36 1 2.2499 2.1310 -1.9975 37 1 0.6323 3.2432 -3.2656 38 1 -1.3350 4.2028 -0.4379 39 1 -3.1349 4.3940 1.4206 40 1 -1.9959 5.7123 1.0150 41 1 -3.3956 7.3763 1.9413 42 1 -3.9876 5.9945 2.9228 43 1 -5.6370 7.4351 1.2026 44 1 -5.9030 5.7040 1.5802 45 1 -4.5377 5.8166 -2.7652 46 1 -3.4370 5.0389 -4.8231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:48 Heat of formation + Delta-G solvation = -34.581011 kcal Electronic energy + Delta-G solvation = -30982.311005 eV Core-core repulsion = 26705.013985 eV Total energy + Delta-G solvation = -4277.297020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34922 -40.36005 -38.58470 -36.92666 -36.44707 -35.79403 -34.53523 -32.99706 -32.57152 -31.52091 -29.83961 -28.79757 -27.94801 -27.10503 -23.83727 -23.24681 -22.42916 -21.92977 -20.96798 -19.94875 -19.76569 -18.59367 -18.12226 -17.22201 -17.00833 -16.80075 -16.30294 -15.76486 -15.47929 -14.94367 -14.50593 -14.25212 -14.14836 -13.98469 -13.89238 -13.67542 -13.48526 -13.35924 -13.19758 -12.73155 -12.60529 -12.53549 -12.41586 -12.00297 -11.87077 -11.83457 -11.75113 -11.39158 -11.07877 -10.89362 -10.78213 -10.71454 -10.50113 -9.99511 -9.93113 -9.89350 -9.78085 -9.52500 -9.21729 -8.41239 -8.34895 -8.17535 -7.80238 -6.67818 -4.28200 0.95962 1.27645 2.06154 2.28005 2.51630 2.92070 3.34353 3.38738 3.39171 3.55283 3.80377 3.90160 4.07506 4.37386 4.45946 4.58918 4.60057 4.74035 5.02446 5.08340 5.14999 5.16536 5.22589 5.27861 5.36428 5.43883 5.55180 5.61672 5.85393 6.00110 6.02698 6.05251 6.17739 6.20878 6.22847 6.52107 6.58425 6.74629 6.84744 6.87809 6.92861 6.96883 7.07313 7.32488 7.39004 7.68323 7.75875 8.17896 8.46857 8.64610 8.94750 9.37620 10.70705 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.003247 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.341245 B = 8620.347083 C =11002.106025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.267 3.733 4 H 0.042 0.958 5 C -0.629 4.629 6 H 0.063 0.937 7 C 0.048 3.952 8 N -0.886 5.886 9 Si 1.031 2.969 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.272 1.272 13 N -0.708 5.708 14 C 0.695 3.305 15 O -0.575 6.575 16 N -0.686 5.686 17 C 0.224 3.776 18 C -0.170 4.170 19 C 0.190 3.810 20 N -0.554 5.554 21 C 0.092 3.908 22 C -0.131 4.131 23 C -0.153 4.153 24 C 0.516 3.484 25 O -0.514 6.514 26 C -0.178 4.178 27 C -0.058 4.058 28 C -0.106 4.106 29 Cl -0.074 7.074 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.272 0.728 36 H 0.392 0.608 37 H 0.407 0.593 38 H 0.173 0.827 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.160 0.840 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.483 10.809 -4.042 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.164 3.836 4 H 0.060 0.940 5 C -0.666 4.666 6 H 0.081 0.919 7 C -0.160 4.160 8 N -0.518 5.518 9 Si 0.858 3.142 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.358 5.358 14 C 0.396 3.604 15 O -0.454 6.454 16 N -0.332 5.332 17 C 0.124 3.876 18 C -0.193 4.193 19 C 0.095 3.905 20 N -0.277 5.277 21 C -0.030 4.030 22 C -0.169 4.169 23 C -0.193 4.193 24 C 0.306 3.694 25 O -0.389 6.389 26 C -0.199 4.199 27 C -0.078 4.078 28 C -0.137 4.137 29 Cl -0.045 7.045 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.224 0.776 37 H 0.244 0.756 38 H 0.190 0.810 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.177 0.823 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.152 10.425 -2.101 21.038 hybrid contribution 0.723 0.091 -2.681 2.779 sum -17.429 10.517 -4.783 20.910 Atomic orbital electron populations 1.21863 0.97294 0.98833 1.01908 1.22277 0.93787 0.99749 1.01513 1.18976 0.95370 0.88076 0.81174 0.93989 1.21990 0.89501 1.49820 1.05274 0.91915 1.25615 0.96383 0.91724 1.02282 1.70863 1.13592 1.37373 1.29943 0.84212 0.76026 0.77599 0.76376 1.20831 1.20648 1.19826 1.45631 1.13068 1.58055 1.19061 1.16074 0.83478 0.78609 0.82217 1.90778 1.52271 1.64591 1.37761 1.42905 1.19605 1.55153 1.15520 1.16915 0.86262 0.92743 0.91632 1.21279 0.96027 1.01646 1.00331 1.17653 0.92608 0.95145 0.85066 1.45807 1.17768 1.57193 1.06887 1.22400 0.99182 1.01434 0.80007 1.22672 0.94172 1.00543 0.99475 1.22347 0.99392 1.05110 0.92405 1.21123 0.80171 0.76354 0.91778 1.90619 1.53692 1.54028 1.40610 1.21445 1.03363 1.05408 0.89673 1.20646 0.92213 0.95899 0.99047 1.20537 0.97387 1.09838 0.85891 1.98341 1.80979 1.89063 1.36138 0.95192 0.92926 0.93420 0.93131 0.91713 0.91828 0.77554 0.75623 0.81008 0.89364 0.89038 0.89526 0.88430 0.87513 0.87245 0.82302 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.50 37.16 0.32 -2.46 16 2 C -0.13 -2.88 5.36 -26.73 -0.14 -3.02 16 3 C 0.27 6.01 1.85 -69.08 -0.13 5.88 16 4 H 0.04 1.02 6.12 -51.93 -0.32 0.70 16 5 C -0.63 -16.16 8.93 -34.44 -0.31 -16.47 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 7 C 0.05 1.30 5.20 -17.82 -0.09 1.21 16 8 N -0.89 -25.39 13.69 55.43 0.76 -24.63 16 9 Si 1.03 23.83 26.51 -169.99 -4.51 19.32 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -5.94 6.20 56.52 0.35 -5.59 16 13 N -0.71 -13.40 5.02 -59.81 -0.30 -13.70 16 14 C 0.70 12.47 6.94 -86.91 -0.60 11.87 16 15 O -0.58 -11.39 10.42 5.28 0.06 -11.33 16 16 N -0.69 -10.16 5.24 -14.21 -0.07 -10.24 16 17 C 0.22 3.29 6.48 -83.67 -0.54 2.74 16 18 C -0.17 -2.52 8.12 -39.21 -0.32 -2.83 16 19 C 0.19 2.60 6.60 -83.70 -0.55 2.05 16 20 N -0.55 -6.43 3.14 -112.18 -0.35 -6.78 16 21 C 0.09 0.81 6.28 -3.02 -0.02 0.79 16 22 C -0.13 -0.73 7.19 -25.00 -0.18 -0.91 16 23 C -0.15 -1.01 6.86 -26.74 -0.18 -1.19 16 24 C 0.52 5.82 7.92 -10.86 -0.09 5.73 16 25 O -0.51 -7.32 14.81 5.55 0.08 -7.24 16 26 C -0.18 -2.35 9.28 -39.36 -0.37 -2.71 16 27 C -0.06 -0.71 9.81 -39.61 -0.39 -1.10 16 28 C -0.11 -1.38 6.34 -39.30 -0.25 -1.63 16 29 Cl -0.07 -0.86 27.72 -51.86 -1.44 -2.30 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.06 7.80 -51.93 -0.41 0.65 16 32 H 0.05 0.94 5.66 -51.93 -0.29 0.65 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.46 5.61 -51.93 -0.29 1.17 16 35 H 0.27 7.70 8.73 -40.82 -0.36 7.35 16 36 H 0.39 6.66 8.54 -40.82 -0.35 6.31 16 37 H 0.41 5.19 7.68 -40.82 -0.31 4.88 16 38 H 0.17 2.77 4.44 -52.49 -0.23 2.54 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.83 7.68 -51.93 -0.40 0.43 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.16 2.18 5.25 -52.49 -0.28 1.90 16 46 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -30.93 379.16 -9.78 -40.72 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.88 Total: 12.51 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.84 Total: -2.05 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.03 Total: -55.35 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.14 Total: -18.57 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -4.51 Total: 19.32 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.44 Total: -2.30 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.93 -9.78 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.137 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds