Wall clock time and date at job start Tue Mar 31 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46809 * 2 1 4 4 H 1.09002 * 109.47095 * 304.99614 * 3 2 1 5 5 C 1.50704 * 109.46918 * 185.00196 * 3 2 1 6 6 H 1.08001 * 119.99473 * 239.99999 * 5 3 2 7 7 C 1.37877 * 120.00002 * 59.99418 * 5 3 2 8 8 N 1.31504 * 120.00088 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99626 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47387 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46865 * 120.00393 * 9 7 5 12 12 H 1.48499 * 109.47405 * 240.00341 * 9 7 5 13 13 N 1.46498 * 109.47297 * 64.99930 * 3 2 1 14 14 C 1.34770 * 120.00060 * 275.00004 * 13 3 2 15 15 O 1.21589 * 120.00214 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00193 * 180.02562 * 14 13 3 17 17 C 1.40001 * 120.00065 * 174.30309 * 16 14 13 18 18 C 1.38730 * 120.04237 * 335.21386 * 17 16 14 19 19 C 1.38739 * 119.87785 * 179.74475 * 18 17 16 20 20 N 1.39972 * 120.02631 * 180.27311 * 19 18 17 21 21 C 1.46760 * 124.34913 * 5.23224 * 20 19 18 22 22 C 1.54661 * 105.38161 * 162.85452 * 21 20 19 23 23 C 1.54629 * 101.68440 * 25.76786 * 22 21 20 24 24 C 1.34419 * 124.34862 * 185.53193 * 20 19 18 25 25 O 1.21295 * 124.94245 * 0.38293 * 24 20 19 26 26 C 1.38927 * 119.94795 * 0.50541 * 19 18 17 27 27 C 1.38149 * 120.07652 * 359.74838 * 26 19 18 28 28 C 1.38262 * 120.12917 * 0.02562 * 27 26 19 29 29 Cl 1.73594 * 119.97757 * 179.97438 * 28 27 26 30 30 H 1.08995 * 109.47205 * 60.00466 * 1 2 3 31 31 H 1.09003 * 109.47189 * 300.00033 * 1 2 3 32 32 H 1.08998 * 109.46580 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47195 * 119.99530 * 2 1 3 34 34 H 1.08994 * 109.47107 * 240.00141 * 2 1 3 35 35 H 0.97004 * 120.00105 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00060 * 95.00278 * 13 3 2 37 37 H 0.96993 * 120.00134 * 354.30038 * 16 14 13 38 38 H 1.08005 * 120.05970 * 359.97438 * 18 17 16 39 39 H 1.09002 * 110.24483 * 281.98477 * 21 20 19 40 40 H 1.08999 * 110.24553 * 43.98211 * 21 20 19 41 41 H 1.09001 * 111.19282 * 267.59209 * 22 21 20 42 42 H 1.09002 * 110.82015 * 143.77109 * 22 21 20 43 43 H 1.09000 * 110.48267 * 216.30995 * 23 22 21 44 44 H 1.08996 * 110.49022 * 93.66599 * 23 22 21 45 45 H 1.07999 * 119.96067 * 179.72447 * 26 19 18 46 46 H 1.07998 * 119.93537 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5465 -0.1942 11 1 6.4970 -0.5173 -1.4629 12 1 6.3990 1.6168 -2.6102 13 7 1.6524 2.0976 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3413 2.6326 0.4317 16 7 0.0787 3.2675 2.5183 17 6 -1.1359 3.9590 2.5995 18 6 -1.7213 4.4717 1.4511 19 6 -2.9277 5.1519 1.5348 20 7 -3.5240 5.6654 0.3773 21 6 -3.0167 5.4469 -0.9824 22 6 -4.1934 5.8017 -1.9213 23 6 -4.9991 6.7948 -1.0520 24 6 -4.6316 6.4270 0.3687 25 8 -5.2472 6.7691 1.3562 26 6 -3.5409 5.3270 2.7690 27 6 -2.9534 4.8202 3.9121 28 6 -1.7537 4.1378 3.8317 29 17 -1.0187 3.5032 5.2707 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1233 1.9978 37 1 0.6636 3.2223 3.2907 38 1 -1.2408 4.3384 0.4930 39 1 -2.1654 6.0993 -1.1768 40 1 -2.7311 4.4034 -1.1152 41 1 -4.7880 4.9195 -2.1586 42 1 -3.8323 6.2830 -2.8302 43 1 -6.0688 6.6638 -1.2154 44 1 -4.7018 7.8206 -1.2696 45 1 -4.4777 5.8603 2.8350 46 1 -3.4323 4.9573 4.8704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:52 Heat of formation + Delta-G solvation = -35.851415 kcal Electronic energy + Delta-G solvation = -30859.149841 eV Core-core repulsion = 26581.797732 eV Total energy + Delta-G solvation = -4277.352109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28120 -40.20886 -38.46975 -36.86683 -36.37951 -35.59798 -34.39329 -32.92797 -32.48795 -31.04921 -29.74760 -28.71151 -27.87613 -26.87692 -23.81156 -23.34660 -22.80232 -21.82170 -20.76889 -19.85048 -19.59711 -18.33891 -17.97585 -17.04957 -16.74616 -16.39753 -16.03085 -15.60335 -15.33582 -14.94219 -14.47327 -14.23123 -14.07201 -13.98946 -13.91790 -13.73068 -13.31771 -13.31373 -13.15553 -12.72189 -12.49558 -12.33093 -11.94647 -11.75386 -11.70833 -11.64322 -11.32749 -11.31731 -11.00837 -10.99284 -10.92337 -10.56510 -10.35672 -10.25088 -9.90357 -9.83641 -9.65796 -9.42274 -9.09952 -8.58029 -8.26882 -7.98896 -7.70190 -6.19482 -4.28711 1.02134 1.34122 2.12854 2.32960 2.58207 3.05181 3.19190 3.27915 3.30613 3.51392 3.90005 3.96493 4.14645 4.26561 4.52816 4.65631 4.74395 4.83837 5.12577 5.16650 5.18688 5.22290 5.28679 5.35098 5.46606 5.50828 5.61538 5.67578 5.93155 6.06775 6.25414 6.26616 6.35566 6.42359 6.59401 6.62363 6.91528 6.93559 6.99415 7.06859 7.25727 7.29057 7.36120 7.58202 7.77947 7.81028 7.88280 8.11229 8.63287 8.74249 9.10881 9.39197 10.85826 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.002906 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.937550 B = 9634.279343 C =11665.280292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.715 5.715 14 C 0.695 3.305 15 O -0.574 6.574 16 N -0.689 5.689 17 C 0.226 3.774 18 C -0.163 4.163 19 C 0.190 3.810 20 N -0.553 5.553 21 C 0.090 3.910 22 C -0.130 4.130 23 C -0.153 4.153 24 C 0.516 3.484 25 O -0.514 6.514 26 C -0.177 4.177 27 C -0.059 4.059 28 C -0.105 4.105 29 Cl -0.074 7.074 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.021 0.979 33 H 0.031 0.969 34 H 0.100 0.900 35 H 0.264 0.736 36 H 0.387 0.613 37 H 0.406 0.594 38 H 0.166 0.834 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.160 0.840 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 10.481 5.461 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.365 5.365 14 C 0.395 3.605 15 O -0.452 6.452 16 N -0.335 5.335 17 C 0.126 3.874 18 C -0.186 4.186 19 C 0.095 3.905 20 N -0.276 5.276 21 C -0.032 4.032 22 C -0.168 4.168 23 C -0.193 4.193 24 C 0.306 3.694 25 O -0.391 6.391 26 C -0.199 4.199 27 C -0.079 4.079 28 C -0.136 4.136 29 Cl -0.046 7.046 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.219 0.781 37 H 0.242 0.758 38 H 0.183 0.817 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.177 0.823 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.727 10.399 4.953 17.919 hybrid contribution 1.815 -0.293 0.800 2.005 sum -11.913 10.105 5.753 16.647 Atomic orbital electron populations 1.21812 0.98237 0.98005 1.01202 1.21968 0.92707 0.99817 1.02330 1.18757 0.94108 0.88911 0.79704 0.93112 1.21249 0.90586 1.39116 1.06364 0.92014 1.24862 0.98638 0.94727 0.95351 1.69895 1.35069 1.37546 1.09315 0.86397 0.84774 0.77816 0.78136 1.19752 1.20859 1.20858 1.45892 1.12822 1.58360 1.19425 1.16062 0.83685 0.78664 0.82065 1.90826 1.51561 1.64430 1.38361 1.42960 1.20105 1.54997 1.15451 1.16894 0.86536 0.92299 0.91649 1.21068 0.95980 1.01316 1.00244 1.17640 0.92575 0.94938 0.85374 1.45808 1.26611 1.48618 1.06581 1.22430 0.97428 1.04405 0.78963 1.22666 0.96130 0.99884 0.98147 1.22346 1.03179 1.01862 0.91870 1.21128 0.79347 0.77012 0.91956 1.90618 1.54661 1.54891 1.38881 1.21435 1.03301 1.05231 0.89904 1.20642 0.92521 0.95690 0.99056 1.20561 0.97684 1.08857 0.86459 1.98337 1.82661 1.86114 1.37461 0.93157 0.94310 0.95957 0.95038 0.88194 0.92561 0.78063 0.75784 0.81683 0.89790 0.88334 0.89437 0.88487 0.87536 0.87323 0.82316 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.29 6.78 2.24 -69.08 -0.15 6.63 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.44 8.73 -34.44 -0.30 -13.74 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.62 11.29 55.43 0.63 -23.00 16 9 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.71 -13.89 5.03 -59.81 -0.30 -14.20 16 14 C 0.69 12.99 6.93 -86.93 -0.60 12.39 16 15 O -0.57 -12.05 10.64 5.29 0.06 -12.00 16 16 N -0.69 -10.54 5.20 -14.21 -0.07 -10.62 16 17 C 0.23 3.43 6.43 -83.66 -0.54 2.89 16 18 C -0.16 -2.50 8.07 -39.21 -0.32 -2.82 16 19 C 0.19 2.68 6.60 -83.70 -0.55 2.13 16 20 N -0.55 -6.70 3.14 -112.17 -0.35 -7.06 16 21 C 0.09 0.85 6.28 -3.03 -0.02 0.83 16 22 C -0.13 -0.82 7.19 -25.00 -0.18 -1.00 16 23 C -0.15 -1.07 6.86 -26.74 -0.18 -1.26 16 24 C 0.52 6.02 7.92 -10.86 -0.09 5.94 16 25 O -0.51 -7.50 14.81 5.54 0.08 -7.41 16 26 C -0.18 -2.42 9.29 -39.36 -0.37 -2.79 16 27 C -0.06 -0.74 9.81 -39.60 -0.39 -1.13 16 28 C -0.10 -1.41 6.34 -39.29 -0.25 -1.66 16 29 Cl -0.07 -0.89 27.77 -51.86 -1.44 -2.33 16 30 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 31 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.39 6.58 8.56 -40.82 -0.35 6.23 16 37 H 0.41 5.30 7.76 -40.82 -0.32 4.99 16 38 H 0.17 2.78 4.72 -52.48 -0.25 2.53 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.07 7.67 -51.93 -0.40 0.67 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.16 2.24 5.24 -52.49 -0.28 1.96 16 46 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -30.01 382.75 -10.43 -40.44 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.91 Total: 13.21 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -3.86 Total: 2.30 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.10 Total: -54.86 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.14 Total: -19.41 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.44 Total: -2.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.01 -10.43 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.588 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds