Wall clock time and date at job start Tue Mar 31 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46809 * 2 1 4 4 H 1.09002 * 109.47095 * 304.99614 * 3 2 1 5 5 C 1.50704 * 109.46918 * 185.00196 * 3 2 1 6 6 H 1.08001 * 119.99473 * 239.99999 * 5 3 2 7 7 C 1.37877 * 120.00002 * 59.99418 * 5 3 2 8 8 N 1.31504 * 120.00088 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99626 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47387 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46865 * 120.00393 * 9 7 5 12 12 H 1.48499 * 109.47405 * 240.00341 * 9 7 5 13 13 N 1.46498 * 109.47297 * 64.99930 * 3 2 1 14 14 C 1.34770 * 120.00060 * 275.00004 * 13 3 2 15 15 O 1.21589 * 120.00214 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00193 * 180.02562 * 14 13 3 17 17 C 1.40001 * 120.00065 * 174.30309 * 16 14 13 18 18 C 1.38730 * 120.04237 * 335.21386 * 17 16 14 19 19 C 1.38739 * 119.87785 * 179.74475 * 18 17 16 20 20 N 1.39972 * 120.02631 * 180.27311 * 19 18 17 21 21 C 1.46760 * 124.34913 * 5.23224 * 20 19 18 22 22 C 1.54661 * 105.38161 * 162.85452 * 21 20 19 23 23 C 1.54629 * 101.68440 * 25.76786 * 22 21 20 24 24 C 1.34419 * 124.34862 * 185.53193 * 20 19 18 25 25 O 1.21295 * 124.94245 * 0.38293 * 24 20 19 26 26 C 1.38927 * 119.94795 * 0.50541 * 19 18 17 27 27 C 1.38149 * 120.07652 * 359.74838 * 26 19 18 28 28 C 1.38262 * 120.12917 * 0.02562 * 27 26 19 29 29 Cl 1.73594 * 119.97757 * 179.97438 * 28 27 26 30 30 H 1.08995 * 109.47205 * 60.00466 * 1 2 3 31 31 H 1.09003 * 109.47189 * 300.00033 * 1 2 3 32 32 H 1.08998 * 109.46580 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47195 * 119.99530 * 2 1 3 34 34 H 1.08994 * 109.47107 * 240.00141 * 2 1 3 35 35 H 0.97004 * 120.00105 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00060 * 95.00278 * 13 3 2 37 37 H 0.96993 * 120.00134 * 354.30038 * 16 14 13 38 38 H 1.08005 * 120.05970 * 359.97438 * 18 17 16 39 39 H 1.09002 * 110.24483 * 281.98477 * 21 20 19 40 40 H 1.08999 * 110.24553 * 43.98211 * 21 20 19 41 41 H 1.09001 * 111.19282 * 267.59209 * 22 21 20 42 42 H 1.09002 * 110.82015 * 143.77109 * 22 21 20 43 43 H 1.09000 * 110.48267 * 216.30995 * 23 22 21 44 44 H 1.08996 * 110.49022 * 93.66599 * 23 22 21 45 45 H 1.07999 * 119.96067 * 179.72447 * 26 19 18 46 46 H 1.07998 * 119.93537 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5465 -0.1942 11 1 6.4970 -0.5173 -1.4629 12 1 6.3990 1.6168 -2.6102 13 7 1.6524 2.0976 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3413 2.6326 0.4317 16 7 0.0787 3.2675 2.5183 17 6 -1.1359 3.9590 2.5995 18 6 -1.7213 4.4717 1.4511 19 6 -2.9277 5.1519 1.5348 20 7 -3.5240 5.6654 0.3773 21 6 -3.0167 5.4469 -0.9824 22 6 -4.1934 5.8017 -1.9213 23 6 -4.9991 6.7948 -1.0520 24 6 -4.6316 6.4270 0.3687 25 8 -5.2472 6.7691 1.3562 26 6 -3.5409 5.3270 2.7690 27 6 -2.9534 4.8202 3.9121 28 6 -1.7537 4.1378 3.8317 29 17 -1.0187 3.5032 5.2707 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1233 1.9978 37 1 0.6636 3.2223 3.2907 38 1 -1.2408 4.3384 0.4930 39 1 -2.1654 6.0993 -1.1768 40 1 -2.7311 4.4034 -1.1152 41 1 -4.7880 4.9195 -2.1586 42 1 -3.8323 6.2830 -2.8302 43 1 -6.0688 6.6638 -1.2154 44 1 -4.7018 7.8206 -1.2696 45 1 -4.4777 5.8603 2.8350 46 1 -3.4323 4.9573 4.8704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097163253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:51 Heat of formation + Delta-G solvation = -53.444372 kcal Electronic energy + Delta-G solvation = -30859.912729 eV Core-core repulsion = 26581.797732 eV Total energy + Delta-G solvation = -4278.114997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.27222 -41.51691 -39.70583 -37.82680 -37.41454 -37.18383 -35.79658 -34.36151 -33.77479 -32.76888 -30.95596 -29.81062 -28.79039 -28.54358 -25.23992 -24.62328 -24.08997 -22.80274 -22.08446 -21.34741 -20.89411 -19.79251 -19.13491 -18.04368 -17.95271 -17.68393 -17.43233 -16.85972 -16.74358 -16.43760 -15.95782 -15.49719 -15.16094 -15.01417 -14.89494 -14.77192 -14.65544 -14.53759 -14.29002 -13.98630 -13.91191 -13.51199 -13.34930 -13.17359 -12.98653 -12.82614 -12.73362 -12.69014 -12.38492 -12.15380 -12.07807 -12.01284 -11.99061 -11.77396 -11.52687 -11.09494 -10.98863 -10.83753 -10.73983 -10.53026 -9.74313 -9.34628 -8.85182 -8.15077 -6.31111 -0.06033 0.19828 1.06650 1.40901 1.44993 1.46840 1.55712 1.60228 1.80370 2.14663 2.42914 2.68239 3.14927 3.21442 3.36980 3.51405 3.73344 3.94744 4.01639 4.10286 4.15270 4.26467 4.49862 4.52259 4.57794 4.59417 4.65018 4.74755 4.78809 4.87843 5.03456 5.04379 5.09232 5.12040 5.13862 5.20030 5.28247 5.44671 5.47127 5.53067 5.62323 5.72652 5.86071 5.88235 6.00459 6.16437 6.20615 6.76054 6.88668 7.15443 7.36189 7.63272 8.90302 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.002906 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.937550 B = 9634.279343 C =11665.280292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.299 3.701 4 H 0.008 0.992 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.713 5.713 14 C 0.696 3.304 15 O -0.599 6.599 16 N -0.675 5.675 17 C 0.208 3.792 18 C -0.175 4.175 19 C 0.183 3.817 20 N -0.560 5.560 21 C 0.083 3.917 22 C -0.117 4.117 23 C -0.140 4.140 24 C 0.505 3.495 25 O -0.549 6.549 26 C -0.182 4.182 27 C -0.050 4.050 28 C -0.104 4.104 29 Cl -0.058 7.058 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.265 0.735 36 H 0.401 0.599 37 H 0.418 0.582 38 H 0.147 0.853 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.157 0.843 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.113 11.265 6.257 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.195 3.805 4 H 0.026 0.974 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.364 5.364 14 C 0.397 3.603 15 O -0.478 6.478 16 N -0.322 5.322 17 C 0.109 3.891 18 C -0.199 4.199 19 C 0.087 3.913 20 N -0.282 5.282 21 C -0.038 4.038 22 C -0.155 4.155 23 C -0.180 4.180 24 C 0.297 3.703 25 O -0.427 6.427 26 C -0.203 4.203 27 C -0.069 4.069 28 C -0.135 4.135 29 Cl -0.029 7.029 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.235 0.765 37 H 0.256 0.744 38 H 0.164 0.836 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.174 0.826 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.925 11.205 5.785 18.786 hybrid contribution 1.804 -0.493 0.598 1.964 sum -12.121 10.712 6.382 17.390 Atomic orbital electron populations 1.21634 0.96963 0.98846 1.00259 1.21819 0.93709 0.99336 1.01249 1.18305 0.93393 0.88760 0.80023 0.97420 1.21570 0.91387 1.38906 1.06633 0.91220 1.25668 1.02893 0.94424 0.95088 1.70031 1.36804 1.38281 1.09808 0.85382 0.79590 0.77714 0.78142 1.18731 1.20667 1.20970 1.45525 1.13598 1.58634 1.18684 1.16073 0.83114 0.78531 0.82601 1.90825 1.52204 1.65192 1.39606 1.42649 1.20501 1.54410 1.14661 1.17057 0.86607 0.92988 0.92435 1.20923 0.96743 1.02561 0.99677 1.17812 0.92268 0.94629 0.86601 1.46096 1.26829 1.48437 1.06853 1.22590 0.99233 1.03346 0.78666 1.22705 0.94474 1.00155 0.98120 1.22421 1.04274 1.03026 0.88267 1.22036 0.78572 0.76145 0.93562 1.90587 1.55515 1.56088 1.40519 1.21532 1.03261 1.05328 0.90159 1.20935 0.91890 0.94243 0.99851 1.20576 0.97804 1.08656 0.86436 1.98343 1.82428 1.85886 1.36235 0.95024 0.94229 0.94106 0.94390 0.90777 0.92580 0.76488 0.74414 0.83578 0.89291 0.90445 0.88968 0.85674 0.85764 0.85099 0.82555 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.51 71.98 0.61 -4.61 16 2 C -0.12 -5.77 5.45 30.60 0.17 -5.61 16 3 C 0.30 14.45 2.24 44.25 0.10 14.55 16 4 H 0.01 0.45 7.58 -2.39 -0.02 0.43 16 5 C -0.55 -27.61 8.73 25.60 0.22 -27.38 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -49.85 11.29 21.45 0.24 -49.61 16 9 Si 0.97 40.69 29.54 68.60 2.03 42.72 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 13 N -0.71 -27.92 5.03 -461.41 -2.32 -30.24 16 14 C 0.70 26.44 6.93 179.06 1.24 27.68 16 15 O -0.60 -26.10 10.64 -3.99 -0.04 -26.14 16 16 N -0.67 -20.54 5.20 -317.15 -1.65 -22.19 16 17 C 0.21 6.30 6.43 38.14 0.25 6.54 16 18 C -0.18 -5.57 8.07 22.51 0.18 -5.38 16 19 C 0.18 5.27 6.60 38.13 0.25 5.52 16 20 N -0.56 -13.68 3.14 -627.38 -1.97 -15.65 16 21 C 0.08 1.59 6.28 86.90 0.55 2.13 16 22 C -0.12 -1.25 7.19 31.72 0.23 -1.02 16 23 C -0.14 -1.66 6.86 30.59 0.21 -1.45 16 24 C 0.50 11.48 7.92 87.90 0.70 12.18 16 25 O -0.55 -15.88 14.81 -3.08 -0.05 -15.92 16 26 C -0.18 -4.90 9.29 22.41 0.21 -4.69 16 27 C -0.05 -1.18 9.81 22.25 0.22 -0.96 16 28 C -0.10 -2.69 6.34 22.46 0.14 -2.55 16 29 Cl -0.06 -1.28 27.77 -2.72 -0.08 -1.35 16 30 H 0.03 1.46 7.84 -2.39 -0.02 1.44 16 31 H 0.04 1.70 5.65 -2.39 -0.01 1.68 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 35 H 0.26 13.76 8.31 -92.71 -0.77 12.98 16 36 H 0.40 13.40 8.56 -92.71 -0.79 12.60 16 37 H 0.42 10.53 7.76 -92.71 -0.72 9.81 16 38 H 0.15 5.22 4.72 -2.91 -0.01 5.20 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.81 7.67 -2.39 -0.02 1.79 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.16 4.39 5.24 -2.91 -0.02 4.37 16 46 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -66.51 382.75 1.43 -65.08 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -0.46 Total: 36.88 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.72 Total: 16.42 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -5.70 Total: -117.68 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.09 Total: -42.06 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.35 kcal Total: -66.51 1.43 -65.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.638 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds