Wall clock time and date at job start Tue Mar 31 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46956 * 180.02562 * 9 7 2 11 11 N 1.40070 * 125.86924 * 269.68884 * 10 9 7 12 12 C 1.30246 * 109.69202 * 179.87009 * 11 10 9 13 13 C 1.41162 * 108.47212 * 0.38596 * 12 11 10 14 14 C 1.36313 * 125.87929 * 89.99075 * 10 9 7 15 15 N 1.33203 * 134.61518 * 359.96914 * 14 10 9 16 16 C 1.31504 * 120.67793 * 179.97438 * 15 14 10 17 17 N 1.32125 * 122.65526 * 0.02562 * 16 15 14 18 18 C 1.32862 * 121.18515 * 359.97438 * 17 16 15 19 19 N 1.38108 * 120.80907 * 180.02562 * 18 17 16 20 20 C 1.46497 * 120.00275 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47260 * 179.97438 * 20 19 18 22 22 H 1.08995 * 109.69738 * 305.00256 * 21 20 19 23 23 C 1.53418 * 109.69845 * 65.56384 * 21 20 19 24 24 O 1.42828 * 108.38925 * 184.40037 * 23 21 20 25 25 C 1.35844 * 117.87562 * 310.87741 * 24 23 21 26 26 C 1.39144 * 118.50773 * 197.12793 * 25 24 23 27 27 C 1.37957 * 120.22032 * 180.22885 * 26 25 24 28 28 C 1.38294 * 119.96068 * 0.02562 * 27 26 25 29 29 C 1.38107 * 119.98144 * 359.90805 * 28 27 26 30 30 C 1.38373 * 121.80138 * 17.19310 * 25 24 23 31 31 C 1.50792 * 121.42330 * 359.49026 * 30 25 24 32 32 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 34 34 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 35 35 H 1.08008 * 125.76252 * 180.15032 * 12 11 10 36 36 H 1.08008 * 118.67195 * 179.97438 * 16 15 14 37 37 H 0.97008 * 119.99841 * 179.97438 * 19 18 17 38 38 H 1.08998 * 109.46992 * 299.99881 * 20 19 18 39 39 H 1.08998 * 109.47189 * 59.99456 * 20 19 18 40 40 H 1.09003 * 109.67693 * 304.12407 * 23 21 20 41 41 H 1.09004 * 109.67726 * 64.67352 * 23 21 20 42 42 H 1.08008 * 119.88415 * 0.22602 * 26 25 24 43 43 H 1.08003 * 120.02301 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.01197 * 179.88099 * 28 27 26 45 45 H 1.07997 * 119.84836 * 179.97438 * 29 28 27 46 46 H 1.08999 * 109.41304 * 257.81213 * 31 30 25 47 47 H 1.09002 * 109.47099 * 137.92672 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 7 2.7325 -4.2400 -1.1364 12 6 3.5487 -5.1879 -0.7733 13 6 3.5848 -5.2311 0.6372 14 6 2.7214 -4.2203 1.1032 15 7 2.5780 -4.0532 2.4169 16 6 3.2298 -4.8176 3.2655 17 7 4.0499 -5.7775 2.8759 18 6 4.2595 -6.0221 1.5869 19 7 5.1180 -7.0278 1.1883 20 6 5.8102 -7.8406 2.1915 21 6 6.6925 -8.8748 1.4897 22 1 6.0898 -9.4628 0.7976 23 6 7.8138 -8.1624 0.7223 24 8 8.5565 -9.1429 -0.0037 25 6 8.9716 -10.2495 0.6660 26 6 9.9796 -11.0268 0.1039 27 6 10.4249 -12.1606 0.7514 28 6 9.8684 -12.5276 1.9631 29 6 8.8687 -11.7578 2.5247 30 6 8.4194 -10.6169 1.8804 31 6 7.3324 -9.7980 2.5296 32 1 -0.4850 -0.8401 -0.0004 33 1 0.6241 -2.5574 0.8881 34 1 0.6247 -2.5564 -0.8919 35 1 4.1013 -5.8344 -1.4390 36 1 3.0897 -4.6535 4.3238 37 1 5.2621 -7.1965 0.2439 38 1 6.4302 -7.1970 2.8156 39 1 5.0761 -8.3522 2.8140 40 1 7.3827 -7.4406 0.0286 41 1 8.4711 -7.6498 1.4248 42 1 10.4147 -10.7414 -0.8426 43 1 11.2077 -12.7614 0.3124 44 1 10.2150 -13.4161 2.4698 45 1 8.4353 -12.0465 3.4708 46 1 7.7612 -9.1981 3.3324 47 1 6.5728 -10.4630 2.9405 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:22 Heat of formation + Delta-G solvation = 96.140729 kcal Electronic energy + Delta-G solvation = -30983.387989 eV Core-core repulsion = 26746.485089 eV Total energy + Delta-G solvation = -4236.902899 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.51647 -41.15009 -38.68753 -38.02254 -36.93932 -34.86721 -34.00935 -32.43571 -31.33339 -31.17903 -30.68221 -29.45319 -27.04625 -26.32004 -26.03710 -24.00402 -23.46694 -23.13639 -22.65251 -21.98133 -20.51022 -20.11766 -18.30586 -18.21884 -17.56487 -17.06007 -16.83808 -16.38702 -16.26364 -15.72628 -15.32686 -15.26743 -15.03637 -14.40899 -14.25932 -14.10465 -14.02695 -13.86713 -13.84060 -13.69186 -13.53889 -13.31374 -12.95942 -12.66288 -12.24338 -12.02229 -11.86244 -11.83681 -11.52104 -11.24772 -11.19185 -11.12535 -11.01407 -10.78034 -10.73642 -10.19894 -10.16409 -9.53981 -9.21446 -9.19024 -8.78616 -8.56178 -8.55869 -8.24941 -7.72604 -6.57495 -4.31935 0.89143 1.01971 1.20206 1.83508 2.78304 2.86178 2.92211 2.99308 3.33938 3.37896 3.39530 3.58544 4.04177 4.07803 4.16632 4.28598 4.40165 4.41754 4.49724 4.58137 4.63809 4.68055 4.76106 4.86312 4.93548 5.00262 5.04122 5.07047 5.12508 5.18050 5.19564 5.27527 5.40496 5.43994 5.51975 5.59089 5.61359 5.69662 5.87711 6.03865 6.11927 6.19902 6.36052 6.50953 6.65557 6.78328 6.88862 7.04193 7.11008 7.36751 7.68148 7.75230 8.08869 8.25389 8.58145 8.70911 9.35906 10.80146 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.021583 B = 0.001701 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.991199 B =16460.425196 C =16917.811419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 1.076 2.924 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.613 4.613 8 H 0.056 0.944 9 C 0.255 3.745 10 N -0.330 5.330 11 N -0.242 5.242 12 C 0.070 3.930 13 C -0.337 4.337 14 C 0.364 3.636 15 N -0.555 5.555 16 C 0.368 3.632 17 N -0.616 5.616 18 C 0.510 3.490 19 N -0.710 5.710 20 C 0.141 3.859 21 C -0.140 4.140 22 H 0.093 0.907 23 C 0.065 3.935 24 O -0.314 6.314 25 C 0.132 3.868 26 C -0.150 4.150 27 C -0.089 4.089 28 C -0.153 4.153 29 C -0.084 4.084 30 C -0.158 4.158 31 C -0.069 4.069 32 H 0.268 0.732 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.184 0.816 36 H 0.196 0.804 37 H 0.409 0.591 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.084 0.916 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.998 -25.755 5.118 32.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.903 3.097 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.651 4.651 8 H 0.074 0.926 9 C 0.137 3.863 10 N -0.116 5.116 11 N -0.058 5.058 12 C -0.125 4.125 13 C -0.355 4.355 14 C 0.116 3.884 15 N -0.279 5.279 16 C 0.074 3.926 17 N -0.347 5.347 18 C 0.258 3.742 19 N -0.344 5.344 20 C 0.017 3.983 21 C -0.159 4.159 22 H 0.111 0.889 23 C -0.010 4.010 24 O -0.228 6.228 25 C 0.087 3.913 26 C -0.168 4.168 27 C -0.107 4.107 28 C -0.172 4.172 29 C -0.102 4.102 30 C -0.159 4.159 31 C -0.106 4.106 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.201 0.799 36 H 0.213 0.787 37 H 0.246 0.754 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.088 0.912 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.102 0.898 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.999 -23.111 4.909 29.702 hybrid contribution 0.637 -2.237 -0.352 2.353 sum 18.635 -25.349 4.557 31.790 Atomic orbital electron populations 1.70831 1.06722 1.30519 1.45511 1.25888 0.96315 1.02603 0.93005 0.83439 0.74869 0.74641 0.76778 1.20356 1.21173 1.21223 1.22098 0.94892 0.90731 1.57387 0.92601 1.19810 0.86405 0.81373 0.98711 1.49162 1.36008 1.27465 0.98978 1.76952 1.11591 1.08100 1.09130 1.23389 0.98934 0.97846 0.92345 1.19598 1.12596 1.07942 0.95333 1.18916 0.91156 0.89794 0.88490 1.67518 1.29640 1.30812 0.99966 1.24433 0.85050 0.83893 0.99207 1.67952 1.26637 1.25665 1.14455 1.17857 0.84110 0.84068 0.88214 1.44303 1.46612 1.34386 1.09093 1.21217 0.94848 0.91685 0.90530 1.22113 0.97161 0.97614 0.99001 0.88886 1.23095 0.92231 0.89143 0.96557 1.86026 1.69558 1.28765 1.38408 1.18740 0.93494 0.87708 0.91406 1.20634 0.97387 0.96706 1.02085 1.20948 0.99132 0.95674 0.94959 1.21039 0.98553 1.00835 0.96740 1.20920 0.96446 0.93534 0.99334 1.19813 1.00839 0.98906 0.96371 1.20435 0.95904 0.97121 0.97187 0.92176 0.93329 0.93826 0.79942 0.78743 0.75420 0.90834 0.90573 0.87285 0.91223 0.85233 0.85454 0.85873 0.85726 0.89756 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.65 55.43 0.76 -26.04 16 2 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 3 Si 1.08 25.34 29.90 -169.99 -5.08 20.26 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.61 -17.69 9.39 -34.44 -0.32 -18.01 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.25 6.76 5.51 -5.19 -0.03 6.73 16 10 N -0.33 -7.90 3.63 -61.64 -0.22 -8.13 16 11 N -0.24 -5.16 12.45 30.80 0.38 -4.78 16 12 C 0.07 1.16 11.87 -17.11 -0.20 0.96 16 13 C -0.34 -5.96 6.14 -106.82 -0.66 -6.61 16 14 C 0.36 7.97 8.04 -156.23 -1.26 6.72 16 15 N -0.55 -11.56 10.47 -13.97 -0.15 -11.71 16 16 C 0.37 6.00 12.24 -92.12 -1.13 4.88 16 17 N -0.62 -9.31 9.69 -13.62 -0.13 -9.44 16 18 C 0.51 7.43 7.55 -154.85 -1.17 6.26 16 19 N -0.71 -6.95 5.38 -60.09 -0.32 -7.27 16 20 C 0.14 1.08 5.11 -4.04 -0.02 1.06 16 21 C -0.14 -0.88 2.45 -90.37 -0.22 -1.10 16 22 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 23 C 0.06 0.46 6.24 37.37 0.23 0.69 16 24 O -0.31 -2.90 10.27 -19.25 -0.20 -3.10 16 25 C 0.13 1.18 6.47 -39.20 -0.25 0.92 16 26 C -0.15 -1.20 9.94 -39.35 -0.39 -1.59 16 27 C -0.09 -0.59 10.04 -39.66 -0.40 -0.99 16 28 C -0.15 -0.98 10.04 -39.61 -0.40 -1.37 16 29 C -0.08 -0.57 9.67 -39.53 -0.38 -0.95 16 30 C -0.16 -1.22 5.75 -104.43 -0.60 -1.82 16 31 C -0.07 -0.41 5.19 -27.80 -0.14 -0.56 16 32 H 0.27 7.87 7.22 -40.82 -0.29 7.57 16 33 H 0.05 1.33 8.01 -51.93 -0.42 0.92 16 34 H 0.04 1.18 8.01 -51.93 -0.42 0.76 16 35 H 0.18 2.02 8.06 -52.48 -0.42 1.60 16 36 H 0.20 2.38 8.06 -52.48 -0.42 1.95 16 37 H 0.41 3.19 7.58 -40.82 -0.31 2.88 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.11 0.68 7.18 -51.93 -0.37 0.31 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 43 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 44 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 46 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -35.22 396.82 -12.51 -47.73 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.09 Total: 0.61 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -7.44 Total: -4.11 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: 0.31 Total: -67.37 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.20 Total: -3.10 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.22 -12.51 -47.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.867 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds