Wall clock time and date at job start Tue Mar 31 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48496 * 109.47322 * 270.00531 * 3 2 1 5 5 H 1.48500 * 109.47081 * 30.00892 * 3 2 1 6 6 H 1.48497 * 109.46893 * 150.00188 * 3 2 1 7 7 C 1.37876 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99741 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00136 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47366 * 179.97438 * 9 7 2 11 11 N 1.40063 * 125.87006 * 269.99974 * 10 9 7 12 12 C 1.30254 * 109.69404 * 179.77504 * 11 10 9 13 13 C 1.41174 * 108.46709 * 0.34712 * 12 11 10 14 14 C 1.36314 * 125.87428 * 89.99613 * 10 9 7 15 15 N 1.33193 * 134.61845 * 359.97350 * 14 10 9 16 16 C 1.31500 * 120.68467 * 180.02562 * 15 14 10 17 17 N 1.32120 * 122.64689 * 0.02562 * 16 15 14 18 18 C 1.32859 * 121.19406 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.81414 * 179.97438 * 18 17 16 20 20 C 1.47007 * 111.00299 * 236.02195 * 19 18 17 21 21 C 1.53093 * 109.26037 * 177.60584 * 20 19 18 22 22 O 1.43020 * 109.25830 * 56.85231 * 21 20 19 23 23 C 1.43013 * 113.73313 * 301.32548 * 22 21 20 24 24 H 1.08995 * 109.51086 * 298.73577 * 23 22 21 25 25 C 1.50706 * 109.50508 * 178.60717 * 23 22 21 26 26 C 1.38243 * 119.99668 * 324.72915 * 25 23 22 27 27 C 1.38229 * 119.99694 * 179.74787 * 26 25 23 28 28 C 1.38233 * 120.00064 * 0.52447 * 27 26 25 29 29 C 1.38234 * 119.99915 * 359.74999 * 28 27 26 30 30 C 1.38228 * 120.00340 * 359.97438 * 29 28 27 31 31 C 1.47018 * 111.00063 * 112.38470 * 19 18 17 32 32 H 0.97000 * 120.00327 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47696 * 59.98788 * 9 7 2 34 34 H 1.09004 * 109.47119 * 299.99504 * 9 7 2 35 35 H 1.07997 * 125.76640 * 179.97438 * 12 11 10 36 36 H 1.08004 * 118.67320 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.51049 * 297.54491 * 20 19 18 38 38 H 1.09003 * 109.50641 * 57.67055 * 20 19 18 39 39 H 1.09009 * 109.50465 * 176.78214 * 21 20 19 40 40 H 1.09001 * 109.51004 * 296.86881 * 21 20 19 41 41 H 1.08003 * 119.99818 * 359.97438 * 26 25 23 42 42 H 1.08004 * 120.00031 * 180.30042 * 27 26 25 43 43 H 1.08003 * 120.00527 * 179.77337 * 28 27 26 44 44 H 1.08012 * 120.00110 * 180.02562 * 29 28 27 45 45 H 1.07998 * 120.00654 * 180.02562 * 30 29 28 46 46 H 1.09001 * 109.50774 * 302.32917 * 31 19 18 47 47 H 1.08996 * 109.50459 * 62.45952 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 7 4.2738 -3.3487 1.1341 12 6 4.6862 -4.5298 0.7713 13 6 4.7089 -4.5818 -0.6393 14 6 4.2656 -3.3286 -1.1055 15 7 4.1913 -3.1217 -2.4191 16 6 4.5254 -4.0690 -3.2677 17 7 4.9460 -5.2593 -2.8778 18 6 5.0534 -5.5629 -1.5888 19 7 5.4934 -6.8097 -1.1899 20 6 4.5145 -7.4552 -0.3032 21 6 5.0132 -8.8548 0.0657 22 8 6.3053 -8.7511 0.6702 23 6 7.2836 -8.1278 -0.1663 24 1 7.4168 -8.7181 -1.0728 25 6 8.5937 -8.0372 0.5732 26 6 8.6034 -7.8078 1.9364 27 6 9.8049 -7.7299 2.6156 28 6 10.9968 -7.8707 1.9298 29 6 10.9872 -8.0945 0.5657 30 6 9.7856 -8.1780 -0.1125 31 6 6.8080 -6.7207 -0.5376 32 1 -0.4850 0.8400 0.0004 33 1 3.8752 -0.6803 0.8887 34 1 3.8744 -0.6801 -0.8912 35 1 4.9692 -5.3316 1.4371 36 1 4.4523 -3.8662 -4.3260 37 1 4.3961 -6.8604 0.6025 38 1 3.5557 -7.5338 -0.8156 39 1 4.3186 -9.3151 0.7685 40 1 5.0796 -9.4665 -0.8340 41 1 7.6722 -7.6930 2.4714 42 1 9.8124 -7.5555 3.6814 43 1 11.9357 -7.8062 2.4598 44 1 11.9185 -8.2049 0.0300 45 1 9.7780 -8.3533 -1.1782 46 1 7.5233 -6.2632 -1.2211 47 1 6.7263 -6.1142 0.3643 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:26 Heat of formation + Delta-G solvation = 128.211925 kcal Electronic energy + Delta-G solvation = -32417.819631 eV Core-core repulsion = 28182.307443 eV Total energy + Delta-G solvation = -4235.512188 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.97201 -40.38240 -39.06908 -38.49532 -36.40436 -33.86315 -33.15994 -32.67091 -31.75506 -31.15959 -30.22947 -29.72092 -27.96125 -27.18526 -24.62159 -24.26346 -23.38239 -22.87888 -22.55378 -21.82052 -20.62949 -20.20926 -17.88257 -17.80693 -17.23280 -17.15578 -16.70091 -16.57564 -15.86727 -15.57241 -15.51964 -15.10709 -14.91829 -14.60961 -14.49998 -14.28347 -14.21037 -14.02027 -13.62412 -13.59674 -13.08424 -13.06239 -12.78065 -12.56345 -12.22604 -12.14860 -11.84581 -11.43140 -11.36405 -11.32588 -11.26683 -10.92973 -10.86335 -10.72444 -10.49415 -10.24436 -10.09797 -9.77153 -9.34674 -9.17033 -9.05431 -8.88284 -8.82599 -8.60219 -8.18533 -6.31157 -4.35075 0.68842 1.01927 1.15580 1.53422 2.59753 2.70700 3.03368 3.14125 3.19536 3.22057 3.32740 3.58551 3.96373 4.17908 4.36984 4.40862 4.47415 4.48835 4.56263 4.64074 4.71496 4.78638 4.86199 4.87862 4.90912 4.97876 5.01669 5.11164 5.15670 5.25343 5.26403 5.33696 5.38677 5.51215 5.56493 5.67044 5.68930 5.80669 6.08961 6.18160 6.23515 6.26266 6.28482 6.37030 6.42223 6.63248 6.71405 6.81110 6.86158 7.05144 7.19796 7.46537 7.84399 8.19698 8.42791 8.69121 9.22771 10.81338 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.013654 B = 0.002454 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.149311 B =11405.557017 C =12063.122784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.082 3.918 3 Si 0.874 3.126 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.235 3.765 10 N -0.330 5.330 11 N -0.218 5.218 12 C 0.061 3.939 13 C -0.310 4.310 14 C 0.350 3.650 15 N -0.518 5.518 16 C 0.339 3.661 17 N -0.537 5.537 18 C 0.431 3.569 19 N -0.492 5.492 20 C 0.019 3.981 21 C 0.068 3.932 22 O -0.374 6.374 23 C 0.140 3.860 24 H 0.081 0.919 25 C -0.084 4.084 26 C -0.090 4.090 27 C -0.123 4.123 28 C -0.118 4.118 29 C -0.123 4.123 30 C -0.106 4.106 31 C 0.040 3.960 32 H 0.270 0.730 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.188 0.812 36 H 0.204 0.796 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.091 0.909 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.174 -18.687 0.271 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.117 3.883 10 N -0.116 5.116 11 N -0.034 5.034 12 C -0.135 4.135 13 C -0.328 4.328 14 C 0.100 3.900 15 N -0.238 5.238 16 C 0.045 3.955 17 N -0.255 5.255 18 C 0.182 3.818 19 N -0.214 5.214 20 C -0.108 4.108 21 C -0.009 4.009 22 O -0.293 6.293 23 C 0.082 3.918 24 H 0.099 0.901 25 C -0.085 4.085 26 C -0.108 4.108 27 C -0.141 4.141 28 C -0.136 4.136 29 C -0.141 4.141 30 C -0.124 4.124 31 C -0.087 4.087 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.205 0.795 36 H 0.220 0.780 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.109 0.891 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.627 -17.612 0.123 25.635 hybrid contribution 0.131 0.972 0.510 1.105 sum 18.757 -16.641 0.633 25.083 Atomic orbital electron populations 1.69861 1.06164 1.27527 1.48578 1.24763 0.94853 0.98852 0.93843 0.86877 0.80344 0.83581 0.79183 1.19423 1.20376 1.18869 1.21059 0.87676 0.95540 1.53767 0.90395 1.20161 0.96866 0.72112 0.99133 1.49100 1.50268 1.13372 0.98910 1.76981 1.14045 1.03340 1.09003 1.23632 1.01217 0.96255 0.92351 1.20847 1.16795 0.98770 0.96342 1.19076 0.93474 0.88891 0.88518 1.67503 1.20262 1.35898 1.00146 1.24784 0.88667 0.82448 0.99571 1.68072 1.19611 1.21697 1.16157 1.19185 0.87884 0.86978 0.87786 1.58645 1.03453 1.17734 1.41605 1.23019 0.95690 0.96237 0.95886 1.22696 0.84357 0.94739 0.99060 1.88012 1.19264 1.80054 1.41975 1.20844 0.86011 0.92198 0.92748 0.90130 1.19503 0.93011 1.01567 0.94396 1.21053 0.98445 0.97537 0.93739 1.21203 0.92461 1.00350 1.00114 1.21208 0.98194 0.99551 0.94604 1.21097 0.97777 1.00591 0.94603 1.20968 0.91694 0.99780 0.99996 1.22834 0.89357 0.97734 0.98779 0.92005 0.92822 0.92965 0.79506 0.77973 0.92115 0.88846 0.87500 0.91676 0.85349 0.85916 0.86121 0.85906 0.85760 0.89054 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.47 13.96 55.43 0.77 -25.70 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.87 20.44 27.47 -169.99 -4.67 15.77 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.54 -15.39 9.94 -34.44 -0.34 -15.74 16 8 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 9 C 0.24 5.75 5.26 -5.20 -0.03 5.72 16 10 N -0.33 -7.48 3.63 -61.65 -0.22 -7.71 16 11 N -0.22 -4.46 12.45 30.80 0.38 -4.08 16 12 C 0.06 1.01 9.92 -17.11 -0.17 0.84 16 13 C -0.31 -5.43 5.40 -106.82 -0.58 -6.01 16 14 C 0.35 7.34 8.04 -156.24 -1.26 6.08 16 15 N -0.52 -10.34 10.47 -13.97 -0.15 -10.49 16 16 C 0.34 5.43 12.24 -92.12 -1.13 4.30 16 17 N -0.54 -8.59 10.45 -13.63 -0.14 -8.73 16 18 C 0.43 6.69 5.78 -154.85 -0.90 5.79 16 19 N -0.49 -6.08 4.76 -172.50 -0.82 -6.91 16 20 C 0.02 0.20 5.29 -3.72 -0.02 0.18 16 21 C 0.07 0.57 7.01 37.21 0.26 0.83 16 22 O -0.37 -3.67 9.63 -35.23 -0.34 -4.01 16 23 C 0.14 1.32 3.01 -27.83 -0.08 1.24 16 24 H 0.08 0.72 8.05 -51.93 -0.42 0.31 16 25 C -0.08 -0.78 5.01 -104.62 -0.52 -1.31 16 26 C -0.09 -0.84 9.35 -39.58 -0.37 -1.21 16 27 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 28 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 29 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 30 C -0.11 -0.88 9.68 -39.59 -0.38 -1.26 16 31 C 0.04 0.44 4.70 -3.71 -0.02 0.42 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 34 H 0.05 1.25 7.57 -51.93 -0.39 0.86 16 35 H 0.19 2.33 6.29 -52.49 -0.33 2.00 16 36 H 0.20 2.37 8.06 -52.48 -0.42 1.95 16 37 H 0.06 0.66 5.22 -51.93 -0.27 0.39 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.13 1.17 7.64 -52.48 -0.40 0.77 16 42 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 44 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -33.61 387.57 -12.09 -45.70 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.92 Total: 2.27 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -6.82 Total: -1.97 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.18 Total: -63.61 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.34 Total: -4.01 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.61 -12.09 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.917 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds