Wall clock time and date at job start Tue Mar 31 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47489 * 270.00369 * 3 2 1 5 5 H 1.48506 * 109.46888 * 30.00156 * 3 2 1 6 6 H 1.48502 * 109.47203 * 150.00052 * 3 2 1 7 7 C 1.37881 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99599 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99914 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.40066 * 125.87681 * 270.07992 * 10 9 7 12 12 C 1.30244 * 109.69988 * 180.26973 * 11 10 9 13 13 C 1.41169 * 108.46817 * 359.80126 * 12 11 10 14 14 C 1.36312 * 125.87392 * 90.00658 * 10 9 7 15 15 N 1.33204 * 134.62313 * 0.02839 * 14 10 9 16 16 C 1.31498 * 120.68705 * 179.68425 * 15 14 10 17 17 N 1.32129 * 122.65296 * 359.97438 * 16 15 14 18 18 C 1.32865 * 121.18451 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.80906 * 179.97438 * 18 17 16 20 20 C 1.47009 * 110.99948 * 236.04631 * 19 18 17 21 21 C 1.53104 * 109.26135 * 182.39472 * 20 19 18 22 22 O 1.43014 * 109.25362 * 303.15690 * 21 20 19 23 23 C 1.43012 * 113.74774 * 58.66460 * 22 21 20 24 24 H 1.09003 * 109.49929 * 61.26127 * 23 22 21 25 25 C 1.50696 * 109.51190 * 181.35015 * 23 22 21 26 26 C 1.38239 * 119.99961 * 39.72840 * 25 23 22 27 27 C 1.38231 * 119.99894 * 179.76463 * 26 25 23 28 28 C 1.38237 * 119.99924 * 0.50840 * 27 26 25 29 29 C 1.38235 * 120.00253 * 359.74400 * 28 27 26 30 30 C 1.38237 * 119.99996 * 220.00144 * 25 23 22 31 31 C 1.47008 * 111.00126 * 359.68387 * 19 18 17 32 32 H 0.97003 * 120.00321 * 359.97438 * 1 2 3 33 33 H 1.08996 * 109.46516 * 60.00718 * 9 7 2 34 34 H 1.08994 * 109.47108 * 300.00965 * 9 7 2 35 35 H 1.07996 * 125.77061 * 179.77876 * 12 11 10 36 36 H 1.08007 * 118.67780 * 180.02562 * 16 15 14 37 37 H 1.09003 * 109.50827 * 302.32764 * 20 19 18 38 38 H 1.09001 * 109.51229 * 62.41710 * 20 19 18 39 39 H 1.09004 * 109.50216 * 63.08048 * 21 20 19 40 40 H 1.08992 * 109.51135 * 183.17030 * 21 20 19 41 41 H 1.08004 * 119.99599 * 359.97438 * 26 25 23 42 42 H 1.07998 * 120.00167 * 180.22839 * 27 26 25 43 43 H 1.07998 * 119.99534 * 179.72452 * 28 27 26 44 44 H 1.07994 * 120.00092 * 179.97438 * 29 28 27 45 45 H 1.07994 * 120.00025 * 359.97438 * 30 25 23 46 46 H 1.09003 * 109.50669 * 297.53614 * 31 19 18 47 47 H 1.08999 * 109.51039 * 57.67359 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7377 -4.2354 -1.1355 12 6 3.5459 -5.1902 -0.7726 13 6 3.5815 -5.2341 0.6379 14 6 2.7221 -4.2198 1.1040 15 7 2.5787 -4.0530 2.4178 16 6 3.2268 -4.8205 3.2664 17 7 4.0425 -5.7842 2.8766 18 6 4.2518 -6.0289 1.5875 19 7 5.1064 -7.0379 1.1888 20 6 6.1591 -6.5177 0.3043 21 6 7.0460 -7.6759 -0.1607 22 8 7.5821 -8.3476 0.9823 23 6 6.5845 -8.8676 1.8653 24 1 5.9772 -9.6019 1.3360 25 6 7.2507 -9.5233 3.0472 26 6 8.3687 -8.9451 3.6191 27 6 8.9769 -9.5441 4.7063 28 6 8.4736 -10.7267 5.2152 29 6 7.3588 -11.3076 4.6401 30 6 6.7474 -10.7059 3.5561 31 6 5.6929 -7.7214 2.3506 32 1 -0.4851 0.8400 0.0004 33 1 0.6242 -2.5567 -0.8904 34 1 0.6247 -2.5570 0.8895 35 1 4.0956 -5.8391 -1.4383 36 1 3.0862 -4.6572 4.3247 37 1 5.7028 -6.0383 -0.5619 38 1 6.7637 -5.7905 0.8463 39 1 6.4521 -8.3757 -0.7487 40 1 7.8612 -7.2877 -0.7713 41 1 8.7647 -8.0237 3.2184 42 1 9.8481 -9.0905 5.1554 43 1 8.9515 -11.1969 6.0618 44 1 6.9658 -12.2318 5.0374 45 1 5.8764 -11.1597 3.1069 46 1 6.2905 -7.0141 2.9257 47 1 4.8964 -8.1208 2.9784 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:30 Heat of formation + Delta-G solvation = 118.443412 kcal Electronic energy + Delta-G solvation = -31991.873784 eV Core-core repulsion = 27755.938001 eV Total energy + Delta-G solvation = -4235.935783 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.77280 -40.42123 -39.10517 -38.34017 -36.34202 -33.84477 -33.18945 -32.50155 -31.52534 -31.16329 -30.13889 -29.80457 -27.49822 -27.00863 -24.87094 -23.81216 -23.47424 -22.93759 -22.51925 -21.81575 -20.63512 -20.14386 -17.87361 -17.74252 -17.08859 -16.75985 -16.70661 -16.42184 -15.74496 -15.54738 -15.43190 -15.21851 -14.77056 -14.64957 -14.51551 -14.41141 -14.03201 -13.90775 -13.62507 -13.48593 -13.10864 -13.00643 -12.75839 -12.28156 -12.07952 -11.80645 -11.67228 -11.46227 -11.33499 -11.27768 -11.13102 -11.01159 -10.87629 -10.83407 -10.34444 -10.26083 -10.08158 -9.84730 -9.37099 -9.17187 -9.03243 -8.88561 -8.65334 -8.44430 -7.96018 -6.27389 -4.34400 0.93723 1.01406 1.15191 1.67772 2.82960 2.87433 3.17715 3.20605 3.26474 3.31481 3.32015 3.60286 4.13203 4.25401 4.27916 4.47442 4.54443 4.59936 4.61317 4.62563 4.76386 4.81359 4.85485 4.88376 4.96428 5.03307 5.08123 5.11582 5.24869 5.25559 5.33393 5.35932 5.45573 5.56092 5.63870 5.68020 5.74281 5.80074 6.15763 6.18766 6.25189 6.26142 6.28555 6.52751 6.70796 6.83515 6.93609 6.95392 7.01229 7.20898 7.57335 7.73489 7.84006 8.06590 8.55529 8.68915 9.30919 10.80843 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.002082 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.193488 B =13446.184981 C =13758.673752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.330 5.330 11 N -0.232 5.232 12 C 0.068 3.932 13 C -0.296 4.296 14 C 0.352 3.648 15 N -0.531 5.531 16 C 0.350 3.650 17 N -0.595 5.595 18 C 0.430 3.570 19 N -0.470 5.470 20 C 0.018 3.982 21 C 0.066 3.934 22 O -0.375 6.375 23 C 0.132 3.868 24 H 0.077 0.923 25 C -0.081 4.081 26 C -0.089 4.089 27 C -0.124 4.124 28 C -0.117 4.117 29 C -0.122 4.122 30 C -0.105 4.105 31 C 0.044 3.956 32 H 0.268 0.732 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.188 0.812 36 H 0.198 0.802 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.066 0.934 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.017 -21.883 6.010 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.048 5.048 12 C -0.128 4.128 13 C -0.312 4.312 14 C 0.103 3.897 15 N -0.253 5.253 16 C 0.056 3.944 17 N -0.320 5.320 18 C 0.180 3.820 19 N -0.188 5.188 20 C -0.108 4.108 21 C -0.011 4.011 22 O -0.294 6.294 23 C 0.074 3.926 24 H 0.095 0.905 25 C -0.081 4.081 26 C -0.107 4.107 27 C -0.142 4.142 28 C -0.135 4.135 29 C -0.140 4.140 30 C -0.123 4.123 31 C -0.083 4.083 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.205 0.795 36 H 0.214 0.786 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.084 0.916 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.911 -21.104 5.611 26.443 hybrid contribution 0.793 1.022 0.214 1.311 sum 15.704 -20.083 5.825 26.151 Atomic orbital electron populations 1.69912 1.06008 1.27733 1.49092 1.24903 0.95000 0.99400 0.94367 0.86332 0.79688 0.82160 0.78342 1.20281 1.20748 1.19782 1.21219 0.93508 0.89607 1.53055 0.92059 1.19843 0.85637 0.79781 1.00141 1.49537 1.35637 1.27826 0.98652 1.76980 1.10785 1.07654 1.09384 1.23544 0.99236 0.97611 0.92359 1.19663 1.10389 1.05597 0.95546 1.19033 0.91645 0.90464 0.88572 1.67530 1.27590 1.29977 1.00156 1.24533 0.85879 0.84616 0.99375 1.68322 1.24491 1.23622 1.15542 1.19339 0.89678 0.85110 0.87831 1.58821 1.18036 1.23383 1.18537 1.23106 0.91979 0.97951 0.97806 1.22730 0.97578 0.92885 0.87929 1.88022 1.32248 1.74090 1.35053 1.20991 0.88326 0.94292 0.88948 0.90495 1.19459 0.96873 0.95504 0.96276 1.21022 0.94824 0.99872 0.94991 1.21182 1.00240 0.96022 0.96724 1.21197 0.96582 0.95919 0.99842 1.21095 0.96330 1.00139 0.96476 1.20976 0.99906 0.94541 0.96882 1.22680 0.98651 0.95882 0.91115 0.92183 0.92610 0.92198 0.79497 0.78584 0.87878 0.92197 0.91574 0.87350 0.85618 0.85991 0.86127 0.85902 0.85815 0.91616 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.03 9.39 -34.44 -0.32 -15.36 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.26 6.88 6.19 -5.20 -0.03 6.85 16 10 N -0.33 -7.72 3.63 -61.65 -0.22 -7.95 16 11 N -0.23 -4.84 12.45 30.80 0.38 -4.45 16 12 C 0.07 1.12 10.75 -17.11 -0.18 0.94 16 13 C -0.30 -5.30 5.75 -106.82 -0.61 -5.91 16 14 C 0.35 7.60 8.04 -156.23 -1.26 6.35 16 15 N -0.53 -10.97 10.47 -13.96 -0.15 -11.12 16 16 C 0.35 5.78 12.24 -92.12 -1.13 4.65 16 17 N -0.59 -9.41 8.88 -13.62 -0.12 -9.53 16 18 C 0.43 6.72 6.43 -154.85 -1.00 5.73 16 19 N -0.47 -5.76 4.75 -172.49 -0.82 -6.58 16 20 C 0.02 0.18 5.38 -3.71 -0.02 0.16 16 21 C 0.07 0.53 7.01 37.21 0.26 0.79 16 22 O -0.38 -3.74 9.79 -35.23 -0.34 -4.09 16 23 C 0.13 1.27 3.01 -27.83 -0.08 1.18 16 24 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 25 C -0.08 -0.76 4.98 -104.62 -0.52 -1.28 16 26 C -0.09 -0.83 9.36 -39.58 -0.37 -1.20 16 27 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 28 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 29 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 30 C -0.10 -0.87 9.67 -39.58 -0.38 -1.25 16 31 C 0.04 0.49 4.10 -3.71 -0.02 0.47 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.19 2.19 6.82 -52.49 -0.36 1.83 16 36 H 0.20 2.44 8.06 -52.48 -0.42 2.02 16 37 H 0.10 1.00 5.09 -51.93 -0.26 0.74 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.13 1.17 7.77 -52.48 -0.41 0.76 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.82 8.04 -52.49 -0.42 0.40 16 46 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 47 H 0.10 1.17 7.88 -51.93 -0.41 0.76 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -32.68 392.72 -12.64 -45.32 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.04 Total: 0.85 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -6.96 Total: -0.09 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -0.19 Total: -64.34 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.34 Total: -4.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.68 -12.64 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.763 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds