Wall clock time and date at job start Tue Mar 31 2020 05:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47577 * 68.63785 * 3 2 1 5 5 N 1.46502 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99658 * 90.00117 * 5 4 3 7 7 C 1.50701 * 109.46992 * 90.00121 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47094 * 90.00289 * 11 9 7 13 13 H 1.48505 * 109.47195 * 210.00171 * 11 9 7 14 14 H 1.48493 * 109.47449 * 330.00136 * 11 9 7 15 15 C 1.34775 * 120.00005 * 270.00252 * 5 4 3 16 16 O 1.21285 * 119.99996 * 179.97438 * 15 5 4 17 17 C 1.50698 * 120.00318 * 0.02562 * 15 5 4 18 18 N 1.46895 * 109.47428 * 180.02562 * 17 15 5 19 19 C 1.47013 * 110.99760 * 293.63174 * 18 17 15 20 20 C 1.53098 * 109.25856 * 177.60942 * 19 18 17 21 21 O 1.43014 * 109.26109 * 56.84834 * 20 19 18 22 22 C 1.43015 * 113.73412 * 301.33209 * 21 20 19 23 23 H 1.08997 * 109.50837 * 298.73017 * 22 21 20 24 24 C 1.50703 * 109.53951 * 178.62621 * 22 21 20 25 25 N 1.29028 * 124.91668 * 314.89346 * 24 22 21 26 26 C 1.31781 * 117.12478 * 179.81180 * 25 24 22 27 27 C 1.33642 * 114.49963 * 0.47280 * 26 25 24 28 28 S 1.70977 * 124.91706 * 135.19496 * 24 22 21 29 29 C 1.47018 * 111.00341 * 169.99975 * 18 17 15 30 30 H 1.09005 * 109.47286 * 308.63699 * 3 2 1 31 31 H 1.09005 * 109.47234 * 188.64425 * 3 2 1 32 32 H 1.08998 * 109.46784 * 60.00071 * 4 3 2 33 33 H 1.08994 * 109.46982 * 300.00384 * 4 3 2 34 34 H 1.09002 * 109.47391 * 330.00112 * 6 5 4 35 35 H 1.09001 * 109.46813 * 210.00168 * 6 5 4 36 36 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 37 37 H 1.09006 * 109.47054 * 299.99977 * 17 15 5 38 38 H 1.09003 * 109.47164 * 59.99309 * 17 15 5 39 39 H 1.09005 * 109.50827 * 297.54416 * 19 18 17 40 40 H 1.09000 * 109.50714 * 57.67234 * 19 18 17 41 41 H 1.09001 * 109.50396 * 296.90805 * 20 19 18 42 42 H 1.09005 * 109.54375 * 176.81175 * 20 19 18 43 43 H 1.07995 * 122.74953 * 180.21734 * 26 25 24 44 44 H 1.07990 * 126.03655 * 179.79024 * 27 26 25 45 45 H 1.08996 * 109.49939 * 302.32631 * 29 18 17 46 46 H 1.08998 * 109.50636 * 62.41190 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.5245 -1.3433 5 7 4.5834 -0.5233 -1.3435 6 6 5.3168 -1.7042 -0.8813 7 6 5.5686 -2.6268 -2.0460 8 1 5.2178 -2.3600 -3.0319 9 6 6.2478 -3.8111 -1.8530 10 7 6.6755 -4.1357 -0.6525 11 14 6.5605 -4.9543 -3.2968 12 1 7.8551 -4.6039 -3.9343 13 1 6.6100 -6.3582 -2.8150 14 1 5.4651 -4.8099 -4.2889 15 6 5.2562 0.5642 -1.7689 16 8 6.4691 0.5654 -1.7686 17 6 4.5017 1.7792 -2.2438 18 7 5.4554 2.8195 -2.6514 19 6 6.2166 3.3180 -1.4967 20 6 7.2372 4.3545 -1.9741 21 8 6.5554 5.4036 -2.6669 22 6 5.8044 4.9535 -3.7977 23 1 6.4772 4.4955 -4.5226 24 6 5.1009 6.1246 -4.4340 25 7 4.4542 7.0365 -3.7898 26 6 3.8990 7.9961 -4.5023 27 6 4.0793 7.8821 -5.8216 28 16 5.0380 6.4330 -6.1145 29 6 4.7692 3.9232 -3.3388 30 1 2.9717 -0.6409 0.8028 31 1 2.9709 1.0169 0.1545 32 1 2.7547 0.1170 -2.1460 33 1 2.7554 -1.5406 -1.4977 34 1 4.7283 -2.2249 -0.1260 35 1 6.2690 -1.3948 -0.4504 36 1 7.1530 -4.9691 -0.5167 37 1 3.8748 1.5085 -3.0934 38 1 3.8751 2.1566 -1.4357 39 1 5.5345 3.7806 -0.7833 40 1 6.7370 2.4884 -1.0182 41 1 7.9518 3.8790 -2.6460 42 1 7.7654 4.7686 -1.1152 43 1 3.3403 8.8059 -4.0568 44 1 3.7043 8.5588 -6.5749 45 1 4.2331 3.5352 -4.2048 46 1 4.0635 4.3950 -2.6551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:29 Heat of formation + Delta-G solvation = 18.214451 kcal Electronic energy + Delta-G solvation = -30178.081622 eV Core-core repulsion = 26002.836353 eV Total energy + Delta-G solvation = -4175.245269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.42896 -39.67072 -38.78830 -36.91410 -35.71454 -35.07316 -32.90858 -32.68607 -30.87711 -29.85493 -29.40654 -27.38127 -26.15281 -24.60853 -24.03838 -23.65982 -22.50084 -21.05634 -19.81160 -18.75831 -18.37621 -17.65667 -16.89137 -16.50496 -16.40584 -16.33351 -15.63208 -15.53944 -15.38254 -15.05284 -14.77666 -14.70963 -14.36914 -14.24611 -14.06326 -13.74425 -13.57929 -13.43080 -13.07484 -12.65767 -12.49988 -12.45399 -12.10971 -12.04998 -11.86688 -11.82359 -11.63848 -11.30642 -11.29825 -11.02535 -10.86506 -10.76047 -10.63654 -10.20465 -9.99618 -9.91025 -9.72452 -9.68512 -9.28622 -8.99057 -8.48652 -8.37626 -7.86373 -6.10449 -4.14870 0.32162 0.94856 1.38680 2.50132 2.69329 2.77817 3.22469 3.28936 3.34061 3.35572 3.38703 3.58363 3.77477 3.99616 4.20274 4.40923 4.60375 4.71069 4.81839 4.86630 4.88644 4.93521 5.04226 5.10315 5.14266 5.19062 5.23332 5.25545 5.34984 5.40952 5.45999 5.47957 5.60011 5.78158 5.79010 5.91247 5.96110 6.03744 6.69076 6.82509 6.96178 6.99010 7.32581 7.40590 7.45741 7.54099 7.85782 8.15317 8.22379 8.82249 8.96762 9.50830 10.97674 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.002442 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.473732 B =11464.187148 C =12749.327620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.216 3.784 3 C -0.050 4.050 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.246 3.754 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.510 3.490 16 O -0.514 6.514 17 C 0.034 3.966 18 N -0.516 5.516 19 C 0.012 3.988 20 C 0.066 3.934 21 O -0.367 6.367 22 C 0.176 3.824 23 H 0.089 0.911 24 C 0.051 3.949 25 N -0.450 5.450 26 C 0.037 3.963 27 C -0.261 4.261 28 S 0.142 5.858 29 C 0.033 3.967 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.177 0.823 44 H 0.179 0.821 45 H 0.087 0.913 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 21.490 -6.608 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.330 5.330 6 C 0.128 3.872 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.296 3.704 16 O -0.389 6.389 17 C -0.097 4.097 18 N -0.241 5.241 19 C -0.116 4.116 20 C -0.011 4.011 21 O -0.286 6.286 22 C 0.114 3.886 23 H 0.107 0.893 24 C -0.228 4.228 25 N -0.164 5.164 26 C -0.114 4.114 27 C -0.400 4.400 28 S 0.396 5.604 29 C -0.097 4.097 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.194 0.806 44 H 0.196 0.804 45 H 0.106 0.894 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.031 20.773 -7.080 22.516 hybrid contribution -0.632 0.140 0.093 0.654 sum -5.664 20.914 -6.987 22.766 Atomic orbital electron populations 1.81214 1.13038 1.09212 1.08720 1.29099 0.95101 0.92863 0.93103 1.19903 0.81374 1.05101 1.02824 1.21301 0.82341 1.03494 0.93780 1.48226 1.04762 1.16260 1.63792 1.19341 0.92533 0.80230 0.95136 1.21407 1.36634 1.03581 0.95013 0.92364 1.24911 0.95314 0.97873 0.95871 1.69915 1.38228 1.24177 1.20964 0.86520 0.78819 0.79755 0.82464 1.20533 1.21219 1.19930 1.20091 0.88240 0.83640 0.78464 1.90657 1.13512 1.81770 1.53000 1.22134 0.94262 0.92147 1.01148 1.61807 1.25355 1.09893 1.27011 1.23015 0.97061 0.99642 0.91887 1.22752 0.93797 0.87658 0.96844 1.88066 1.65270 1.33214 1.42041 1.20335 0.91799 0.87309 0.89114 0.89294 1.26702 1.01886 1.00167 0.94030 1.66233 1.09159 1.02323 1.38701 1.21906 1.01168 0.98708 0.89629 1.27192 1.08694 1.03014 1.01084 1.84084 1.47954 1.20085 1.08242 1.22695 0.95531 0.91488 0.99969 0.86407 0.87786 0.90800 0.88640 0.94755 0.93561 0.92677 0.88082 0.92224 0.94288 0.86825 0.91580 0.87892 0.80615 0.80366 0.89437 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.45 18.54 42.15 0.78 -5.67 16 2 C 0.22 2.55 15.43 -20.76 -0.32 2.23 16 3 C -0.05 -0.51 6.03 -29.52 -0.18 -0.68 16 4 C 0.12 1.48 5.17 -4.04 -0.02 1.46 16 5 N -0.60 -10.40 2.46 -175.06 -0.43 -10.83 16 6 C 0.25 5.63 5.16 -5.19 -0.03 5.61 16 7 C -0.53 -13.77 9.39 -34.44 -0.32 -14.09 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 11 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 C 0.51 8.87 7.38 -10.99 -0.08 8.79 16 16 O -0.51 -11.17 13.93 5.55 0.08 -11.09 16 17 C 0.03 0.43 4.00 -4.98 -0.02 0.41 16 18 N -0.52 -6.81 4.46 -235.75 -1.05 -7.86 16 19 C 0.01 0.15 5.29 -3.71 -0.02 0.13 16 20 C 0.07 0.78 7.01 37.21 0.26 1.04 16 21 O -0.37 -4.77 10.44 -35.23 -0.37 -5.14 16 22 C 0.18 2.02 3.31 -27.83 -0.09 1.93 16 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 24 C 0.05 0.55 6.29 -13.45 -0.08 0.47 16 25 N -0.45 -5.30 10.53 -11.86 -0.12 -5.43 16 26 C 0.04 0.33 11.35 -19.18 -0.22 0.11 16 27 C -0.26 -1.87 11.37 29.12 0.33 -1.54 16 28 S 0.14 1.16 23.18 -107.50 -2.49 -1.33 16 29 C 0.03 0.37 4.91 -3.71 -0.02 0.35 16 30 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 0.85 7.22 -51.93 -0.37 0.48 16 32 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 33 H 0.10 1.30 8.07 -51.93 -0.42 0.89 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.05 1.21 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.10 1.13 7.30 -51.93 -0.38 0.75 16 38 H 0.06 0.62 7.16 -51.93 -0.37 0.25 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.11 1.71 5.88 -51.93 -0.31 1.41 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -33.97 401.94 -9.08 -43.05 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.34 Total: -1.15 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.91 Total: 7.82 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.09 Total: -54.18 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.29 Total: -16.23 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.49 Total: -1.33 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.97 -9.08 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.267 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds