Wall clock time and date at job start Tue Mar 31 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40056 * 125.87809 * 90.02329 * 10 9 7 12 12 C 1.30250 * 109.69972 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.46900 * 359.97438 * 12 11 10 14 14 C 1.36323 * 125.87070 * 269.71454 * 10 9 7 15 15 N 1.33189 * 134.62115 * 0.03466 * 14 10 9 16 16 C 1.31498 * 120.69184 * 180.02562 * 15 14 10 17 17 N 1.32138 * 122.64192 * 0.02562 * 16 15 14 18 18 C 1.32863 * 121.18743 * 359.63110 * 17 16 15 19 19 N 1.38105 * 120.80419 * 179.91504 * 18 17 16 20 20 C 1.46957 * 111.00047 * 124.46858 * 19 18 17 21 21 C 1.53055 * 109.36611 * 176.80713 * 20 19 18 22 22 N 1.46956 * 109.36210 * 58.40180 * 21 20 19 23 23 C 1.39001 * 111.00109 * 176.80837 * 22 21 20 24 24 C 1.39136 * 119.70895 * 303.80145 * 23 22 21 25 25 C 1.38301 * 119.10027 * 179.97438 * 24 23 22 26 26 C 1.38876 * 118.50217 * 359.97438 * 25 24 23 27 27 C 1.38020 * 119.33603 * 0.02562 * 26 25 24 28 28 N 1.31976 * 120.85105 * 359.71608 * 27 26 25 29 29 C 1.46957 * 110.88031 * 300.67986 * 22 21 20 30 30 C 1.46952 * 111.00645 * 0.66478 * 19 18 17 31 31 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 33 33 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 34 34 H 1.08007 * 125.76411 * 180.02562 * 12 11 10 35 35 H 1.08000 * 118.68710 * 180.02562 * 16 15 14 36 36 H 1.09004 * 109.49250 * 296.77432 * 20 19 18 37 37 H 1.09003 * 109.49328 * 56.83942 * 20 19 18 38 38 H 1.08993 * 109.49138 * 298.43031 * 21 20 19 39 39 H 1.09003 * 109.50687 * 178.37437 * 21 20 19 40 40 H 1.08003 * 120.44910 * 359.97438 * 24 23 22 41 41 H 1.07999 * 120.74649 * 180.02562 * 25 24 23 42 42 H 1.08007 * 120.33675 * 180.02562 * 26 25 24 43 43 H 1.07994 * 119.57806 * 179.97438 * 27 26 25 44 44 H 1.09003 * 109.48528 * 299.35349 * 29 22 21 45 45 H 1.09003 * 109.50526 * 179.29957 * 29 22 21 46 46 H 1.09001 * 109.49111 * 303.16094 * 30 19 18 47 47 H 1.09006 * 109.48477 * 63.20119 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7358 -4.2419 1.1219 12 6 3.5484 -5.1914 0.7548 13 6 3.5848 -5.2282 -0.6559 14 6 2.7178 -4.2185 -1.1176 15 7 2.5704 -4.0493 -2.4304 16 6 3.2194 -4.8121 -3.2825 17 7 4.0400 -5.7734 -2.8969 18 6 4.2587 -6.0158 -1.6090 19 7 5.1166 -7.0237 -1.2148 20 6 6.1680 -6.5041 -0.3293 21 6 7.0479 -7.6620 0.1478 22 7 7.6324 -8.3416 -1.0168 23 6 8.4959 -9.3560 -0.6200 24 6 9.5622 -9.0630 0.2244 25 6 10.4133 -10.0820 0.6117 26 6 10.1683 -11.3651 0.1403 27 6 9.0916 -11.5847 -0.6948 28 7 8.2929 -10.5937 -1.0440 29 6 6.5810 -8.8613 -1.9023 30 6 5.7011 -7.7034 -2.3792 31 1 -0.4850 0.8401 -0.0004 32 1 0.6242 -2.5609 0.8844 33 1 0.6244 -2.5529 -0.8956 34 1 4.1003 -5.8413 1.4178 35 1 3.0762 -4.6464 -4.3400 36 1 6.7787 -5.7837 -0.8735 37 1 5.7104 -6.0165 0.5316 38 1 6.4427 -8.3688 0.7154 39 1 7.8460 -7.2755 0.7817 40 1 9.7231 -8.0534 0.5727 41 1 11.2490 -9.8845 1.2667 42 1 10.8139 -12.1832 0.4243 43 1 8.8977 -12.5808 -1.0641 44 1 5.9704 -9.5817 -1.3579 45 1 7.0384 -9.3490 -2.7631 46 1 4.9031 -8.0902 -3.0130 47 1 6.3061 -6.9965 -2.9470 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:09 Heat of formation + Delta-G solvation = 192.594103 kcal Electronic energy + Delta-G solvation = -31850.283178 eV Core-core repulsion = 27649.855562 eV Total energy + Delta-G solvation = -4200.427616 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.166 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.74761 -41.01339 -39.42897 -38.22309 -36.16215 -33.82839 -32.95718 -32.56884 -31.75093 -31.18649 -30.74043 -29.58921 -27.36876 -26.80683 -24.96488 -23.86125 -23.56930 -22.88543 -22.71180 -22.20093 -20.49384 -20.03531 -18.16619 -17.65355 -17.44220 -16.74108 -16.62854 -16.43448 -16.21082 -15.54323 -15.34050 -15.09601 -14.85002 -14.68608 -14.62538 -14.26631 -14.18749 -13.82896 -13.60316 -13.49413 -13.39269 -12.95397 -12.47721 -12.33394 -12.18607 -11.79559 -11.60015 -11.54470 -11.38228 -11.23664 -11.06008 -10.94125 -10.78842 -10.36954 -10.32358 -10.22315 -10.14478 -9.85955 -9.80469 -9.33270 -8.84689 -8.63208 -8.47289 -8.38413 -7.91751 -6.25521 -4.32508 0.77068 0.93301 0.98962 1.72066 2.86324 2.91321 3.05797 3.23696 3.27130 3.29874 3.31580 3.50600 4.06423 4.17590 4.29103 4.30265 4.46398 4.49441 4.61064 4.66350 4.75687 4.78162 4.84293 4.87633 4.93346 4.94361 5.09689 5.10545 5.18797 5.24071 5.34049 5.37097 5.45336 5.52483 5.60358 5.64527 5.76374 5.84588 5.86403 6.10860 6.19779 6.25622 6.44152 6.58038 6.78903 6.97531 7.00472 7.05147 7.25259 7.60124 7.65078 7.76289 7.86138 8.10033 8.59370 8.70892 9.32612 10.82660 Molecular weight = 365.17amu Principal moments of inertia in cm(-1) A = 0.019145 B = 0.001999 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.208376 B =14002.402279 C =14624.166615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.330 5.330 11 N -0.233 5.233 12 C 0.068 3.932 13 C -0.297 4.297 14 C 0.352 3.648 15 N -0.533 5.533 16 C 0.350 3.650 17 N -0.595 5.595 18 C 0.432 3.568 19 N -0.472 5.472 20 C 0.059 3.941 21 C 0.063 3.937 22 N -0.480 5.480 23 C 0.316 3.684 24 C -0.187 4.187 25 C -0.054 4.054 26 C -0.205 4.205 27 C 0.126 3.874 28 N -0.519 5.519 29 C 0.068 3.932 30 C 0.065 3.935 31 H 0.269 0.731 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.188 0.812 35 H 0.198 0.802 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.155 0.845 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.134 -22.100 -0.702 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.049 5.049 12 C -0.127 4.127 13 C -0.313 4.313 14 C 0.103 3.897 15 N -0.255 5.255 16 C 0.056 3.944 17 N -0.320 5.320 18 C 0.182 3.818 19 N -0.190 5.190 20 C -0.067 4.067 21 C -0.064 4.064 22 N -0.198 5.198 23 C 0.084 3.916 24 C -0.210 4.210 25 C -0.080 4.080 26 C -0.226 4.226 27 C -0.032 4.032 28 N -0.234 5.234 29 C -0.059 4.059 30 C -0.062 4.062 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.204 0.796 35 H 0.214 0.786 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.172 0.828 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.328 -21.075 -1.093 27.306 hybrid contribution 1.553 0.545 0.610 1.755 sum 18.880 -20.531 -0.484 27.896 Atomic orbital electron populations 1.69908 1.06006 1.27811 1.49038 1.24902 0.95000 0.99378 0.94379 0.86393 0.79445 0.81826 0.78873 1.19969 1.20853 1.19982 1.21185 0.93478 0.89616 1.53127 0.92098 1.19831 0.85655 0.79763 1.00117 1.49521 1.35878 1.27644 0.98665 1.76975 1.10855 1.07573 1.09516 1.23532 0.99153 0.97703 0.92352 1.19670 1.10177 1.05979 0.95521 1.19027 0.91640 0.90460 0.88555 1.67517 1.27797 1.30065 1.00073 1.24530 0.85858 0.84641 0.99327 1.68324 1.24440 1.23583 1.15676 1.19335 0.89694 0.84984 0.87778 1.58803 1.18049 1.23289 1.18864 1.22453 0.90854 0.96026 0.97411 1.22382 0.97565 0.95885 0.90520 1.59329 1.19151 1.24227 1.17077 1.19837 0.92923 0.87745 0.91108 1.21593 0.96610 1.00984 1.01768 1.21459 0.97590 0.92422 0.96526 1.22004 1.00781 0.98052 1.01780 1.22543 0.90078 0.97472 0.93068 1.67632 1.30081 0.99272 1.26399 1.22172 0.90850 0.95811 0.97082 1.22210 0.97853 0.95460 0.90640 0.92150 0.92663 0.92215 0.79569 0.78610 0.91920 0.87954 0.92068 0.88612 0.84568 0.84732 0.84949 0.82762 0.92103 0.88696 0.88270 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -15.06 9.39 -34.44 -0.32 -15.38 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.26 6.92 6.19 -5.20 -0.03 6.88 16 10 N -0.33 -7.76 3.63 -61.65 -0.22 -7.98 16 11 N -0.23 -4.88 12.45 30.80 0.38 -4.50 16 12 C 0.07 1.13 10.74 -17.11 -0.18 0.94 16 13 C -0.30 -5.33 5.75 -106.82 -0.61 -5.94 16 14 C 0.35 7.62 8.04 -156.23 -1.26 6.36 16 15 N -0.53 -11.02 10.47 -13.97 -0.15 -11.17 16 16 C 0.35 5.77 12.24 -92.11 -1.13 4.65 16 17 N -0.60 -9.35 8.87 -13.62 -0.12 -9.48 16 18 C 0.43 6.72 6.43 -154.85 -1.00 5.73 16 19 N -0.47 -5.80 4.73 -172.65 -0.82 -6.62 16 20 C 0.06 0.60 5.35 -3.76 -0.02 0.58 16 21 C 0.06 0.52 5.37 -3.77 -0.02 0.50 16 22 N -0.48 -4.60 4.73 -173.04 -0.82 -5.42 16 23 C 0.32 3.01 6.40 -155.02 -0.99 2.01 16 24 C -0.19 -1.43 9.21 -39.23 -0.36 -1.79 16 25 C -0.05 -0.33 10.17 -39.32 -0.40 -0.73 16 26 C -0.21 -1.24 10.10 -39.42 -0.40 -1.64 16 27 C 0.13 0.93 11.17 -17.57 -0.20 0.74 16 28 N -0.52 -5.11 8.71 -12.44 -0.11 -5.22 16 29 C 0.07 0.67 4.78 -3.77 -0.02 0.65 16 30 C 0.07 0.72 4.80 -3.77 -0.02 0.70 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.19 2.21 6.85 -52.48 -0.36 1.85 16 35 H 0.20 2.43 8.06 -52.49 -0.42 2.00 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.00 5.08 -51.93 -0.26 0.73 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.61 6.79 -51.93 -0.35 0.26 16 40 H 0.14 0.84 7.18 -52.48 -0.38 0.46 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 45 H 0.09 0.94 7.83 -51.93 -0.41 0.53 16 46 H 0.10 1.12 7.84 -51.93 -0.41 0.72 16 47 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -33.21 387.93 -13.27 -46.48 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.93 Total: 0.34 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -7.05 Total: 6.04 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -1.11 Total: -75.13 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.21 -13.27 -46.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.076 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds