Wall clock time and date at job start Tue Mar 31 2020 07:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40056 * 125.87809 * 90.02329 * 10 9 7 12 12 C 1.30250 * 109.69972 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.46900 * 359.97438 * 12 11 10 14 14 C 1.36323 * 125.87070 * 269.71454 * 10 9 7 15 15 N 1.33189 * 134.62115 * 0.03466 * 14 10 9 16 16 C 1.31498 * 120.69184 * 180.02562 * 15 14 10 17 17 N 1.32138 * 122.64192 * 0.02562 * 16 15 14 18 18 C 1.32863 * 121.18743 * 359.63110 * 17 16 15 19 19 N 1.38105 * 120.80419 * 179.91504 * 18 17 16 20 20 C 1.46957 * 111.00047 * 124.46858 * 19 18 17 21 21 C 1.53055 * 109.36611 * 176.80713 * 20 19 18 22 22 N 1.46956 * 109.36210 * 58.40180 * 21 20 19 23 23 C 1.39001 * 111.00109 * 176.80837 * 22 21 20 24 24 C 1.39136 * 119.70895 * 303.80145 * 23 22 21 25 25 C 1.38301 * 119.10027 * 179.97438 * 24 23 22 26 26 C 1.38876 * 118.50217 * 359.97438 * 25 24 23 27 27 C 1.38020 * 119.33603 * 0.02562 * 26 25 24 28 28 N 1.31976 * 120.85105 * 359.71608 * 27 26 25 29 29 C 1.46957 * 110.88031 * 300.67986 * 22 21 20 30 30 C 1.46952 * 111.00645 * 0.66478 * 19 18 17 31 31 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 33 33 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 34 34 H 1.08007 * 125.76411 * 180.02562 * 12 11 10 35 35 H 1.08000 * 118.68710 * 180.02562 * 16 15 14 36 36 H 1.09004 * 109.49250 * 296.77432 * 20 19 18 37 37 H 1.09003 * 109.49328 * 56.83942 * 20 19 18 38 38 H 1.08993 * 109.49138 * 298.43031 * 21 20 19 39 39 H 1.09003 * 109.50687 * 178.37437 * 21 20 19 40 40 H 1.08003 * 120.44910 * 359.97438 * 24 23 22 41 41 H 1.07999 * 120.74649 * 180.02562 * 25 24 23 42 42 H 1.08007 * 120.33675 * 180.02562 * 26 25 24 43 43 H 1.07994 * 119.57806 * 179.97438 * 27 26 25 44 44 H 1.09003 * 109.48528 * 299.35349 * 29 22 21 45 45 H 1.09003 * 109.50526 * 179.29957 * 29 22 21 46 46 H 1.09001 * 109.49111 * 303.16094 * 30 19 18 47 47 H 1.09006 * 109.48477 * 63.20119 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7358 -4.2419 1.1219 12 6 3.5484 -5.1914 0.7548 13 6 3.5848 -5.2282 -0.6559 14 6 2.7178 -4.2185 -1.1176 15 7 2.5704 -4.0493 -2.4304 16 6 3.2194 -4.8121 -3.2825 17 7 4.0400 -5.7734 -2.8969 18 6 4.2587 -6.0158 -1.6090 19 7 5.1166 -7.0237 -1.2148 20 6 6.1680 -6.5041 -0.3293 21 6 7.0479 -7.6620 0.1478 22 7 7.6324 -8.3416 -1.0168 23 6 8.4959 -9.3560 -0.6200 24 6 9.5622 -9.0630 0.2244 25 6 10.4133 -10.0820 0.6117 26 6 10.1683 -11.3651 0.1403 27 6 9.0916 -11.5847 -0.6948 28 7 8.2929 -10.5937 -1.0440 29 6 6.5810 -8.8613 -1.9023 30 6 5.7011 -7.7034 -2.3792 31 1 -0.4850 0.8401 -0.0004 32 1 0.6242 -2.5609 0.8844 33 1 0.6244 -2.5529 -0.8956 34 1 4.1003 -5.8413 1.4178 35 1 3.0762 -4.6464 -4.3400 36 1 6.7787 -5.7837 -0.8735 37 1 5.7104 -6.0165 0.5316 38 1 6.4427 -8.3688 0.7154 39 1 7.8460 -7.2755 0.7817 40 1 9.7231 -8.0534 0.5727 41 1 11.2490 -9.8845 1.2667 42 1 10.8139 -12.1832 0.4243 43 1 8.8977 -12.5808 -1.0641 44 1 5.9704 -9.5817 -1.3579 45 1 7.0384 -9.3490 -2.7631 46 1 4.9031 -8.0902 -3.0130 47 1 6.3061 -6.9965 -2.9470 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:07 Heat of formation + Delta-G solvation = 172.342794 kcal Electronic energy + Delta-G solvation = -31851.161341 eV Core-core repulsion = 27649.855562 eV Total energy + Delta-G solvation = -4201.305779 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.166 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.11546 -41.71459 -40.46628 -39.40247 -37.09288 -35.76292 -34.03974 -33.52162 -33.17851 -32.23693 -31.67966 -30.63972 -29.22316 -27.74865 -26.01209 -25.23474 -24.90156 -24.04033 -23.49030 -23.12396 -21.76820 -21.07885 -19.17502 -19.02315 -18.77820 -18.49204 -17.65153 -17.29261 -16.89237 -16.75179 -16.64160 -16.17214 -16.10379 -15.63181 -15.59443 -15.47774 -15.12166 -14.99987 -14.85341 -14.64351 -14.21865 -13.96066 -13.91219 -13.73899 -13.23907 -13.08038 -12.81770 -12.78217 -12.58825 -12.47095 -12.38277 -12.33645 -12.23868 -12.15773 -11.81017 -11.64161 -10.99116 -10.76845 -10.72502 -10.59009 -10.36811 -10.24879 -9.86005 -9.39665 -9.06724 -8.36841 -6.53726 -0.34014 0.24400 0.28277 0.43638 1.27577 1.35531 1.37346 1.46943 1.50637 2.15930 2.30898 2.44705 2.80618 2.93007 2.95308 3.09245 3.25354 3.47192 3.56013 3.59863 3.76128 3.91796 3.96839 4.06355 4.13227 4.19336 4.23452 4.26166 4.31417 4.34402 4.41438 4.53604 4.69909 4.75130 4.80067 4.83393 4.86887 4.89189 4.97113 5.08946 5.11870 5.31377 5.37790 5.41827 5.46425 5.59954 5.67999 5.75355 5.79569 5.81659 6.16349 6.18751 6.50548 6.59325 7.09768 7.15057 7.23612 8.70882 Molecular weight = 365.17amu Principal moments of inertia in cm(-1) A = 0.019145 B = 0.001999 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.208376 B =14002.402279 C =14624.166615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.048 0.952 9 C 0.284 3.716 10 N -0.363 5.363 11 N -0.275 5.275 12 C 0.101 3.899 13 C -0.305 4.305 14 C 0.328 3.672 15 N -0.580 5.580 16 C 0.361 3.639 17 N -0.592 5.592 18 C 0.445 3.555 19 N -0.467 5.467 20 C 0.059 3.941 21 C 0.069 3.931 22 N -0.487 5.487 23 C 0.292 3.708 24 C -0.193 4.193 25 C -0.056 4.056 26 C -0.199 4.199 27 C 0.109 3.891 28 N -0.547 5.547 29 C 0.081 3.919 30 C 0.072 3.928 31 H 0.274 0.726 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.238 0.762 35 H 0.234 0.766 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.173 0.827 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.482 -23.552 -0.209 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.066 0.934 9 C 0.165 3.835 10 N -0.149 5.149 11 N -0.090 5.090 12 C -0.094 4.094 13 C -0.321 4.321 14 C 0.080 3.920 15 N -0.304 5.304 16 C 0.068 3.932 17 N -0.317 5.317 18 C 0.194 3.806 19 N -0.184 5.184 20 C -0.067 4.067 21 C -0.057 4.057 22 N -0.205 5.205 23 C 0.061 3.939 24 C -0.215 4.215 25 C -0.082 4.082 26 C -0.220 4.220 27 C -0.048 4.048 28 N -0.262 5.262 29 C -0.046 4.046 30 C -0.055 4.055 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.254 0.746 35 H 0.250 0.750 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.180 0.820 42 H 0.177 0.823 43 H 0.190 0.810 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.714 -22.580 -0.594 30.648 hybrid contribution 0.675 0.705 0.390 1.051 sum 21.389 -21.875 -0.205 30.595 Atomic orbital electron populations 1.70009 1.07397 1.28986 1.49271 1.25807 0.95916 1.02887 0.93560 0.85356 0.78321 0.77479 0.79014 1.19655 1.19492 1.19205 1.21340 0.92937 0.90998 1.53779 0.93385 1.19173 0.85909 0.80787 0.97644 1.49151 1.37210 1.28375 1.00214 1.76933 1.13215 1.09640 1.09184 1.24323 0.96684 0.95895 0.92524 1.19779 1.10225 1.05804 0.96335 1.19414 0.92415 0.91339 0.88821 1.67540 1.30152 1.32367 1.00333 1.25321 0.84108 0.83387 1.00344 1.68489 1.24270 1.23356 1.15613 1.19579 0.89330 0.84388 0.87262 1.58824 1.18454 1.21697 1.19395 1.22573 0.90279 0.96857 0.96952 1.22402 0.97929 0.94999 0.90385 1.59385 1.18909 1.24713 1.17494 1.19986 0.93694 0.87761 0.92505 1.21810 0.96237 1.02111 1.01354 1.21855 0.97883 0.92077 0.96356 1.22350 1.00226 0.98950 1.00458 1.22965 0.90466 0.97811 0.93576 1.67577 1.31383 0.99942 1.27296 1.21955 0.90683 0.94795 0.97158 1.22189 0.97721 0.95507 0.90045 0.91689 0.94865 0.94887 0.74625 0.74992 0.92364 0.87260 0.92102 0.86173 0.83288 0.82009 0.82291 0.81039 0.92989 0.88884 0.88642 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 2 C 0.02 1.09 5.46 84.66 0.46 1.56 16 3 Si 0.98 44.44 29.54 68.60 2.03 46.47 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.55 -32.38 9.39 25.60 0.24 -32.14 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.28 15.90 6.19 85.64 0.53 16.44 16 10 N -0.36 -17.87 3.63 -348.96 -1.27 -19.13 16 11 N -0.28 -11.74 12.45 -56.46 -0.70 -12.44 16 12 C 0.10 3.26 10.74 85.65 0.92 4.18 16 13 C -0.31 -10.82 5.75 -21.29 -0.12 -10.94 16 14 C 0.33 14.62 8.04 134.15 1.08 15.70 16 15 N -0.58 -24.66 10.47 -198.10 -2.07 -26.74 16 16 C 0.36 11.72 12.24 180.87 2.21 13.94 16 17 N -0.59 -17.97 8.87 -197.01 -1.75 -19.72 16 18 C 0.44 13.32 6.43 133.64 0.86 14.18 16 19 N -0.47 -10.61 4.73 -700.13 -3.31 -13.92 16 20 C 0.06 1.06 5.35 86.31 0.46 1.52 16 21 C 0.07 0.97 5.37 86.31 0.46 1.43 16 22 N -0.49 -8.43 4.73 -701.38 -3.32 -11.75 16 23 C 0.29 5.01 6.40 133.06 0.85 5.86 16 24 C -0.19 -2.42 9.21 22.50 0.21 -2.22 16 25 C -0.06 -0.51 10.17 22.44 0.23 -0.28 16 26 C -0.20 -1.80 10.10 22.37 0.23 -1.57 16 27 C 0.11 1.40 11.17 84.62 0.95 2.34 16 28 N -0.55 -9.98 8.71 -193.27 -1.68 -11.66 16 29 C 0.08 1.51 4.78 86.31 0.41 1.93 16 30 C 0.07 1.48 4.80 86.31 0.41 1.90 16 31 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 32 H 0.03 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.03 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.24 4.84 6.85 -2.91 -0.02 4.82 16 35 H 0.23 5.43 8.06 -2.91 -0.02 5.40 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 1.80 5.08 -2.39 -0.01 1.79 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.12 1.13 6.79 -2.39 -0.02 1.11 16 40 H 0.15 1.37 7.18 -2.91 -0.02 1.35 16 41 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 43 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.05 1.06 8.05 -2.39 -0.02 1.04 16 45 H 0.09 1.77 7.83 -2.39 -0.02 1.75 16 46 H 0.10 2.05 7.84 -2.39 -0.02 2.03 16 47 H 0.06 1.30 8.08 -2.38 -0.02 1.28 16 Total: -1.00 -76.15 387.93 -0.39 -76.54 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.01 Total: 12.38 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 10.39 Total: 33.81 kcal Atomic # 7 Polarization: -155.38 SS G_CDS: -13.82 Total: -169.20 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -76.15 -0.39 -76.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.882 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds