Wall clock time and date at job start Tue Mar 31 2020 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99963 * 2 1 4 4 H 1.48503 * 109.46992 * 239.99542 * 3 2 1 5 5 H 1.48500 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47399 * 119.99919 * 3 2 1 7 7 C 1.37880 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99857 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47194 * 179.97438 * 9 7 2 11 11 N 1.40059 * 125.87208 * 269.69000 * 10 9 7 12 12 C 1.30258 * 109.69772 * 180.26236 * 11 10 9 13 13 C 1.41157 * 108.46845 * 359.97438 * 12 11 10 14 14 C 1.36312 * 125.87366 * 89.99480 * 10 9 7 15 15 N 1.33192 * 134.62378 * 359.76401 * 14 10 9 16 16 C 1.31521 * 120.69194 * 179.97438 * 15 14 10 17 17 N 1.32105 * 122.64791 * 359.97438 * 16 15 14 18 18 C 1.32885 * 121.19217 * 0.02562 * 17 16 15 19 19 N 1.38168 * 120.81570 * 179.97438 * 18 17 16 20 20 C 1.40092 * 119.99673 * 5.66745 * 19 18 17 21 21 C 1.39434 * 120.40977 * 31.74672 * 20 19 18 22 22 C 1.38260 * 118.44570 * 179.97438 * 21 20 19 23 23 C 1.39099 * 119.17219 * 359.97438 * 22 21 20 24 24 N 1.39261 * 119.62628 * 179.97438 * 23 22 21 25 25 C 1.48535 * 110.99900 * 62.60518 * 24 23 22 26 26 C 1.54936 * 103.22442 * 159.71884 * 25 24 23 27 27 C 1.54592 * 102.92543 * 322.58771 * 26 25 24 28 28 C 1.47897 * 111.00210 * 180.02562 * 24 23 22 29 29 N 1.32340 * 120.74780 * 0.02562 * 23 22 21 30 30 C 1.31968 * 121.69332 * 359.72791 * 29 23 22 31 31 H 0.97003 * 119.99689 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.47380 * 59.99468 * 9 7 2 33 33 H 1.09007 * 109.46858 * 299.99520 * 9 7 2 34 34 H 1.07990 * 125.76912 * 179.97438 * 12 11 10 35 35 H 1.07997 * 118.67486 * 180.02562 * 16 15 14 36 36 H 0.96998 * 119.99735 * 185.66943 * 19 18 17 37 37 H 1.07999 * 120.77423 * 359.97438 * 21 20 19 38 38 H 1.08004 * 120.41001 * 179.97438 * 22 21 20 39 39 H 1.08999 * 110.66656 * 278.15767 * 25 24 23 40 40 H 1.08998 * 110.66545 * 41.29001 * 25 24 23 41 41 H 1.09001 * 110.72140 * 204.22346 * 26 25 24 42 42 H 1.09002 * 110.87529 * 81.01994 * 26 25 24 43 43 H 1.09003 * 110.30677 * 263.04285 * 27 26 25 44 44 H 1.08996 * 110.31174 * 140.87546 * 27 26 25 45 45 H 1.09005 * 109.91950 * 333.50860 * 28 24 23 46 46 H 1.09000 * 109.91882 * 94.80148 * 28 24 23 47 47 H 1.08012 * 119.62088 * 180.26474 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7316 -4.2405 -1.1344 12 6 3.5418 -5.1938 -0.7715 13 6 3.5817 -5.2340 0.6389 14 6 2.7221 -4.2198 1.1051 15 7 2.5823 -4.0500 2.4187 16 6 3.2338 -4.8148 3.2675 17 7 4.0493 -5.7783 2.8778 18 6 4.2554 -6.0261 1.5887 19 7 5.1104 -7.0354 1.1898 20 6 5.6801 -7.8885 2.1438 21 6 4.9846 -8.2089 3.3090 22 6 5.5851 -9.0552 4.2228 23 6 6.8541 -9.5559 3.9511 24 7 7.4679 -10.4086 4.8651 25 6 6.6888 -11.6625 5.0296 26 6 7.7281 -12.6512 5.6151 27 6 9.0270 -12.2698 4.8688 28 6 8.8048 -10.8236 4.3877 29 7 7.4851 -9.2303 2.8343 30 6 6.9400 -8.4294 1.9382 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 4.0902 -5.8436 -1.4372 35 1 3.0959 -4.6489 4.3258 36 1 5.3162 -7.1532 0.2492 37 1 3.9999 -7.8055 3.4935 38 1 5.0751 -9.3240 5.1361 39 1 5.8638 -11.5141 5.7263 40 1 6.3215 -12.0163 4.0663 41 1 7.4460 -13.6812 5.3969 42 1 7.8426 -12.5035 6.6890 43 1 9.1825 -12.9323 4.0173 44 1 9.8799 -12.3161 5.5458 45 1 8.8387 -10.7853 3.2989 46 1 9.5689 -10.1702 4.8089 47 1 7.4834 -8.1892 1.0362 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:13 Heat of formation + Delta-G solvation = 181.196468 kcal Electronic energy + Delta-G solvation = -31070.932387 eV Core-core repulsion = 26870.010532 eV Total energy + Delta-G solvation = -4200.921855 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.166 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.65727 -40.93207 -39.12027 -38.29271 -36.42506 -33.88086 -32.92958 -32.48675 -31.98172 -31.42090 -30.01517 -29.26428 -28.01466 -27.19983 -24.54650 -23.99019 -23.64655 -23.13406 -22.37075 -21.38613 -21.03613 -20.10323 -18.47005 -18.00511 -17.71049 -17.00579 -16.74096 -16.30616 -16.29164 -15.86923 -15.34133 -14.92859 -14.79648 -14.56747 -14.33857 -14.10234 -13.94053 -13.65902 -13.57332 -13.46730 -13.07838 -13.01128 -12.46826 -12.38234 -12.25174 -11.97281 -11.73553 -11.73212 -11.54971 -11.15240 -11.07933 -10.95519 -10.81630 -10.44032 -10.32468 -10.25651 -10.03382 -9.86424 -9.79024 -9.29917 -8.80651 -8.65990 -8.63259 -8.14177 -7.56398 -6.26432 -4.33432 0.73190 1.13220 1.31948 1.77695 2.68819 2.86163 2.95033 3.23728 3.27061 3.31577 3.32461 3.67307 4.09737 4.20669 4.26025 4.29219 4.36119 4.48132 4.58196 4.60518 4.69882 4.76433 4.89873 4.92644 4.93698 5.05169 5.09040 5.11348 5.29545 5.37973 5.41985 5.43780 5.48905 5.56695 5.60407 5.65006 5.75537 5.84168 5.95951 6.09758 6.28789 6.36013 6.54393 6.73942 6.91504 6.96321 6.99874 7.05979 7.34356 7.62653 7.76305 7.78498 7.84983 8.08383 8.59758 8.70252 9.31934 10.81740 Molecular weight = 365.17amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.001724 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.732174 B =16235.226442 C =16397.287906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.329 5.329 11 N -0.236 5.236 12 C 0.067 3.933 13 C -0.328 4.328 14 C 0.364 3.636 15 N -0.544 5.544 16 C 0.364 3.636 17 N -0.607 5.607 18 C 0.499 3.501 19 N -0.640 5.640 20 C 0.097 3.903 21 C -0.051 4.051 22 C -0.154 4.154 23 C 0.273 3.727 24 N -0.460 5.460 25 C 0.043 3.957 26 C -0.124 4.124 27 C -0.134 4.134 28 C 0.036 3.964 29 N -0.498 5.498 30 C 0.090 3.910 31 H 0.269 0.731 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.185 0.815 35 H 0.199 0.801 36 H 0.421 0.579 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.776 -25.460 7.979 30.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.115 5.115 11 N -0.052 5.052 12 C -0.128 4.128 13 C -0.345 4.345 14 C 0.115 3.885 15 N -0.267 5.267 16 C 0.070 3.930 17 N -0.336 5.336 18 C 0.248 3.752 19 N -0.266 5.266 20 C -0.001 4.001 21 C -0.080 4.080 22 C -0.177 4.177 23 C 0.041 3.959 24 N -0.179 5.179 25 C -0.083 4.083 26 C -0.162 4.162 27 C -0.172 4.172 28 C -0.091 4.091 29 N -0.211 5.211 30 C -0.070 4.070 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.202 0.798 35 H 0.215 0.785 36 H 0.259 0.741 37 H 0.171 0.829 38 H 0.155 0.845 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.592 -24.381 8.273 29.114 hybrid contribution 0.167 0.649 -1.081 1.272 sum 13.759 -23.733 7.191 28.360 Atomic orbital electron populations 1.69905 1.06006 1.27829 1.49038 1.24892 0.94991 0.99369 0.94330 0.86395 0.79452 0.81809 0.78904 1.20003 1.20833 1.19932 1.21191 0.93517 0.89627 1.53171 0.92073 1.19840 0.85628 0.79758 1.00126 1.49531 1.35757 1.27567 0.98692 1.76974 1.11254 1.07616 1.09338 1.23418 0.99272 0.97978 0.92144 1.19589 1.11840 1.07697 0.95402 1.18947 0.91130 0.89850 0.88551 1.67532 1.29026 1.30145 1.00009 1.24516 0.85243 0.83831 0.99378 1.68065 1.25926 1.25330 1.14261 1.17861 0.84786 0.83953 0.88564 1.41677 1.46677 1.29433 1.08859 1.18640 0.93581 0.95200 0.92717 1.21582 1.00718 0.93482 0.92205 1.21444 0.95267 0.99963 1.01043 1.19874 0.91047 0.96658 0.88353 1.62113 1.03757 1.13019 1.39046 1.23317 0.96863 0.87494 1.00659 1.22507 0.94397 0.98561 1.00760 1.22461 0.98362 0.96082 1.00273 1.22867 0.89722 0.95165 1.01391 1.67428 1.36349 1.15611 1.01746 1.22205 0.90363 0.95895 0.98582 0.92142 0.92664 0.92151 0.79787 0.78473 0.74063 0.82876 0.84524 0.89244 0.92844 0.90633 0.90395 0.91320 0.90840 0.90115 0.90203 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -15.06 9.39 -34.44 -0.32 -15.38 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.26 6.85 6.19 -5.19 -0.03 6.81 16 10 N -0.33 -7.60 3.63 -61.64 -0.22 -7.82 16 11 N -0.24 -4.83 12.45 30.80 0.38 -4.44 16 12 C 0.07 1.06 11.88 -17.11 -0.20 0.85 16 13 C -0.33 -5.58 6.14 -106.81 -0.66 -6.23 16 14 C 0.36 7.66 8.04 -156.23 -1.26 6.40 16 15 N -0.54 -10.91 10.47 -13.97 -0.15 -11.06 16 16 C 0.36 5.73 12.24 -92.12 -1.13 4.60 16 17 N -0.61 -9.03 7.21 -13.60 -0.10 -9.13 16 18 C 0.50 7.23 7.30 -154.77 -1.13 6.10 16 19 N -0.64 -6.86 5.48 -9.53 -0.05 -6.92 16 20 C 0.10 1.05 6.35 -83.49 -0.53 0.52 16 21 C -0.05 -0.57 8.71 -39.13 -0.34 -0.91 16 22 C -0.15 -1.57 9.45 -39.25 -0.37 -1.95 16 23 C 0.27 2.95 6.22 -154.83 -0.96 1.99 16 24 N -0.46 -4.34 5.30 -169.17 -0.90 -5.24 16 25 C 0.04 0.30 6.05 -1.90 -0.01 0.29 16 26 C -0.12 -0.67 7.06 -24.87 -0.18 -0.85 16 27 C -0.13 -0.80 6.93 -25.36 -0.18 -0.97 16 28 C 0.04 0.30 6.36 -2.74 -0.02 0.28 16 29 N -0.50 -5.57 8.14 -12.24 -0.10 -5.67 16 30 C 0.09 0.91 11.10 -17.35 -0.19 0.72 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.19 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 36 H 0.42 3.26 8.69 -40.82 -0.35 2.91 16 37 H 0.15 1.80 6.27 -52.49 -0.33 1.47 16 38 H 0.14 1.15 8.05 -52.48 -0.42 0.73 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.39 8.00 -51.93 -0.42 -0.02 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.77 6.50 -51.93 -0.34 0.43 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -33.25 394.65 -13.13 -46.38 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.05 Total: 2.08 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -7.60 Total: 4.06 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -0.40 Total: -74.91 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.25 -13.13 -46.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.574 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds