Wall clock time and date at job start Tue Mar 31 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99963 * 2 1 4 4 H 1.48503 * 109.46992 * 239.99542 * 3 2 1 5 5 H 1.48500 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47399 * 119.99919 * 3 2 1 7 7 C 1.37880 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99857 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47194 * 179.97438 * 9 7 2 11 11 N 1.40059 * 125.87208 * 269.69000 * 10 9 7 12 12 C 1.30258 * 109.69772 * 180.26236 * 11 10 9 13 13 C 1.41157 * 108.46845 * 359.97438 * 12 11 10 14 14 C 1.36312 * 125.87366 * 89.99480 * 10 9 7 15 15 N 1.33192 * 134.62378 * 359.76401 * 14 10 9 16 16 C 1.31521 * 120.69194 * 179.97438 * 15 14 10 17 17 N 1.32105 * 122.64791 * 359.97438 * 16 15 14 18 18 C 1.32885 * 121.19217 * 0.02562 * 17 16 15 19 19 N 1.38168 * 120.81570 * 179.97438 * 18 17 16 20 20 C 1.40092 * 119.99673 * 5.66745 * 19 18 17 21 21 C 1.39434 * 120.40977 * 31.74672 * 20 19 18 22 22 C 1.38260 * 118.44570 * 179.97438 * 21 20 19 23 23 C 1.39099 * 119.17219 * 359.97438 * 22 21 20 24 24 N 1.39261 * 119.62628 * 179.97438 * 23 22 21 25 25 C 1.48535 * 110.99900 * 62.60518 * 24 23 22 26 26 C 1.54936 * 103.22442 * 159.71884 * 25 24 23 27 27 C 1.54592 * 102.92543 * 322.58771 * 26 25 24 28 28 C 1.47897 * 111.00210 * 180.02562 * 24 23 22 29 29 N 1.32340 * 120.74780 * 0.02562 * 23 22 21 30 30 C 1.31968 * 121.69332 * 359.72791 * 29 23 22 31 31 H 0.97003 * 119.99689 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.47380 * 59.99468 * 9 7 2 33 33 H 1.09007 * 109.46858 * 299.99520 * 9 7 2 34 34 H 1.07990 * 125.76912 * 179.97438 * 12 11 10 35 35 H 1.07997 * 118.67486 * 180.02562 * 16 15 14 36 36 H 0.96998 * 119.99735 * 185.66943 * 19 18 17 37 37 H 1.07999 * 120.77423 * 359.97438 * 21 20 19 38 38 H 1.08004 * 120.41001 * 179.97438 * 22 21 20 39 39 H 1.08999 * 110.66656 * 278.15767 * 25 24 23 40 40 H 1.08998 * 110.66545 * 41.29001 * 25 24 23 41 41 H 1.09001 * 110.72140 * 204.22346 * 26 25 24 42 42 H 1.09002 * 110.87529 * 81.01994 * 26 25 24 43 43 H 1.09003 * 110.30677 * 263.04285 * 27 26 25 44 44 H 1.08996 * 110.31174 * 140.87546 * 27 26 25 45 45 H 1.09005 * 109.91950 * 333.50860 * 28 24 23 46 46 H 1.09000 * 109.91882 * 94.80148 * 28 24 23 47 47 H 1.08012 * 119.62088 * 180.26474 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7316 -4.2405 -1.1344 12 6 3.5418 -5.1938 -0.7715 13 6 3.5817 -5.2340 0.6389 14 6 2.7221 -4.2198 1.1051 15 7 2.5823 -4.0500 2.4187 16 6 3.2338 -4.8148 3.2675 17 7 4.0493 -5.7783 2.8778 18 6 4.2554 -6.0261 1.5887 19 7 5.1104 -7.0354 1.1898 20 6 5.6801 -7.8885 2.1438 21 6 4.9846 -8.2089 3.3090 22 6 5.5851 -9.0552 4.2228 23 6 6.8541 -9.5559 3.9511 24 7 7.4679 -10.4086 4.8651 25 6 6.6888 -11.6625 5.0296 26 6 7.7281 -12.6512 5.6151 27 6 9.0270 -12.2698 4.8688 28 6 8.8048 -10.8236 4.3877 29 7 7.4851 -9.2303 2.8343 30 6 6.9400 -8.4294 1.9382 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 4.0902 -5.8436 -1.4372 35 1 3.0959 -4.6489 4.3258 36 1 5.3162 -7.1532 0.2492 37 1 3.9999 -7.8055 3.4935 38 1 5.0751 -9.3240 5.1361 39 1 5.8638 -11.5141 5.7263 40 1 6.3215 -12.0163 4.0663 41 1 7.4460 -13.6812 5.3969 42 1 7.8426 -12.5035 6.6890 43 1 9.1825 -12.9323 4.0173 44 1 9.8799 -12.3161 5.5458 45 1 8.8387 -10.7853 3.2989 46 1 9.5689 -10.1702 4.8089 47 1 7.4834 -8.1892 1.0362 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:11 Heat of formation + Delta-G solvation = 162.217363 kcal Electronic energy + Delta-G solvation = -31071.755383 eV Core-core repulsion = 26870.010532 eV Total energy + Delta-G solvation = -4201.744850 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.166 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.97808 -41.74824 -40.16490 -39.27408 -37.43507 -35.76565 -34.14059 -33.39388 -33.02011 -32.91110 -31.18491 -29.83328 -29.33314 -28.65867 -25.69593 -25.54138 -24.58316 -24.39763 -23.50125 -22.15850 -21.73275 -21.29540 -19.65222 -19.18688 -18.83522 -18.47066 -18.07220 -17.59899 -17.13523 -16.75674 -16.58212 -16.53974 -15.76368 -15.57876 -15.35067 -15.17706 -15.03088 -14.99389 -14.68291 -14.37754 -14.14518 -13.86378 -13.79807 -13.68259 -13.13673 -13.11788 -13.02576 -12.98653 -12.75895 -12.42648 -12.32267 -12.21235 -12.05768 -11.94793 -11.60451 -11.46635 -11.35752 -10.82746 -10.76846 -10.67781 -10.37219 -10.10112 -9.86197 -9.47688 -8.55086 -8.36488 -6.53611 -0.32859 0.16271 0.33284 0.55372 1.29766 1.35729 1.36674 1.46763 1.57751 1.76541 2.30664 2.60480 2.83761 2.93255 2.98062 3.15031 3.32295 3.45724 3.52855 3.62797 3.71946 3.89819 3.98082 3.99573 4.07245 4.13584 4.29981 4.37196 4.38539 4.58501 4.67647 4.75444 4.81183 4.84191 4.89483 4.95062 4.99427 5.07716 5.10837 5.12320 5.18306 5.32739 5.43302 5.45227 5.52347 5.66296 5.68789 5.76279 5.88438 5.99416 6.20951 6.46893 6.51920 6.69142 6.98667 7.15770 7.33348 8.70708 Molecular weight = 365.17amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.001724 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.732174 B =16235.226442 C =16397.287906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.046 0.954 9 C 0.284 3.716 10 N -0.365 5.365 11 N -0.284 5.284 12 C 0.101 3.899 13 C -0.334 4.334 14 C 0.338 3.662 15 N -0.594 5.594 16 C 0.375 3.625 17 N -0.604 5.604 18 C 0.511 3.489 19 N -0.617 5.617 20 C 0.081 3.919 21 C -0.056 4.056 22 C -0.158 4.158 23 C 0.269 3.731 24 N -0.471 5.471 25 C 0.040 3.960 26 C -0.119 4.119 27 C -0.129 4.129 28 C 0.034 3.966 29 N -0.514 5.514 30 C 0.099 3.901 31 H 0.274 0.726 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.245 0.755 35 H 0.233 0.767 36 H 0.437 0.563 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.312 -27.541 8.562 33.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.592 4.592 8 H 0.065 0.935 9 C 0.166 3.834 10 N -0.151 5.151 11 N -0.099 5.099 12 C -0.094 4.094 13 C -0.351 4.351 14 C 0.091 3.909 15 N -0.320 5.320 16 C 0.082 3.918 17 N -0.333 5.333 18 C 0.259 3.741 19 N -0.243 5.243 20 C -0.017 4.017 21 C -0.085 4.085 22 C -0.180 4.180 23 C 0.037 3.963 24 N -0.190 5.190 25 C -0.085 4.085 26 C -0.157 4.157 27 C -0.168 4.168 28 C -0.093 4.093 29 N -0.227 5.227 30 C -0.062 4.062 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.261 0.739 35 H 0.249 0.751 36 H 0.279 0.721 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 16.177 -26.547 8.852 32.323 hybrid contribution -0.457 1.012 -1.113 1.572 sum 15.720 -25.534 7.739 30.968 Atomic orbital electron populations 1.70001 1.07340 1.28966 1.49289 1.25772 0.95893 1.02783 0.93554 0.85384 0.78355 0.77648 0.78946 1.19378 1.19378 1.19698 1.21358 0.92915 0.91169 1.53778 0.93537 1.19143 0.85907 0.80781 0.97615 1.49130 1.37214 1.28366 1.00369 1.76927 1.13949 1.09977 1.09038 1.24369 0.96536 0.96039 0.92429 1.19660 1.11839 1.07397 0.96224 1.19348 0.91952 0.90837 0.88790 1.67542 1.31527 1.32619 1.00322 1.25246 0.83648 0.82585 1.00281 1.68240 1.25791 1.24975 1.14284 1.17915 0.84378 0.83859 0.87936 1.41589 1.44965 1.27867 1.09928 1.18695 0.94177 0.95923 0.92904 1.21598 1.00527 0.93746 0.92605 1.21570 0.95222 0.99758 1.01474 1.20157 0.91178 0.96608 0.88378 1.62127 1.04428 1.13976 1.38514 1.23421 0.97418 0.86803 1.00857 1.22524 0.93395 0.99014 1.00768 1.22453 0.99059 0.94448 1.00805 1.22875 0.89163 0.96658 1.00638 1.67525 1.36746 1.16238 1.02217 1.22592 0.89956 0.94605 0.99029 0.91683 0.94934 0.94808 0.73928 0.75125 0.72098 0.83611 0.83103 0.88291 0.93217 0.88937 0.90017 0.90581 0.89935 0.91268 0.91061 0.80158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.98 13.29 21.45 0.28 -53.70 16 2 C 0.02 1.20 5.46 84.66 0.46 1.66 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -32.56 9.39 25.60 0.24 -32.32 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 9 C 0.28 15.85 6.19 85.63 0.53 16.38 16 10 N -0.36 -17.66 3.63 -348.93 -1.27 -18.93 16 11 N -0.28 -11.82 12.45 -56.47 -0.70 -12.53 16 12 C 0.10 3.03 11.88 85.64 1.02 4.05 16 13 C -0.33 -11.04 6.14 -21.28 -0.13 -11.17 16 14 C 0.34 14.64 8.04 134.15 1.08 15.72 16 15 N -0.59 -24.54 10.47 -198.10 -2.07 -26.61 16 16 C 0.37 11.60 12.24 180.87 2.21 13.81 16 17 N -0.60 -17.06 7.21 -196.94 -1.42 -18.48 16 18 C 0.51 13.82 7.30 133.62 0.98 14.80 16 19 N -0.62 -11.34 5.48 -184.08 -1.01 -12.35 16 20 C 0.08 1.54 6.35 38.20 0.24 1.78 16 21 C -0.06 -1.14 8.71 22.56 0.20 -0.94 16 22 C -0.16 -2.92 9.45 22.48 0.21 -2.71 16 23 C 0.27 5.32 6.22 132.98 0.83 6.15 16 24 N -0.47 -8.08 5.30 -689.12 -3.65 -11.73 16 25 C 0.04 0.48 6.05 86.65 0.52 1.00 16 26 C -0.12 -0.98 7.06 31.80 0.22 -0.76 16 27 C -0.13 -1.26 6.93 31.48 0.22 -1.04 16 28 C 0.03 0.52 6.36 86.46 0.55 1.07 16 29 N -0.51 -10.44 8.14 -192.64 -1.57 -12.00 16 30 C 0.10 1.71 11.10 84.77 0.94 2.65 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.03 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.24 3.87 8.06 -2.92 -0.02 3.85 16 35 H 0.23 5.14 8.06 -2.91 -0.02 5.11 16 36 H 0.44 5.03 8.69 -92.71 -0.81 4.22 16 37 H 0.15 3.17 6.27 -2.91 -0.02 3.16 16 38 H 0.15 2.26 8.05 -2.91 -0.02 2.23 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.63 8.00 -2.39 -0.02 0.61 16 41 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 1.23 6.50 -2.38 -0.02 1.22 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.18 2.06 8.06 -2.90 -0.02 2.04 16 Total: -1.00 -76.75 394.65 1.16 -75.59 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.22 Total: 13.94 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 10.32 Total: 30.13 kcal Atomic # 7 Polarization: -154.93 SS G_CDS: -11.41 Total: -166.33 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.75 1.16 -75.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.808 kcal (2) G-P(sol) polarization free energy of solvation -76.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds