Wall clock time and date at job start Tue Mar 31 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.53001 * 109.46575 * 240.00110 * 2 1 3 5 5 C 1.50696 * 109.46966 * 120.00818 * 2 1 3 6 6 C 1.38397 * 119.83446 * 59.99527 * 5 2 1 7 7 C 1.37888 * 120.17708 * 179.97438 * 6 5 2 8 8 C 1.39846 * 119.82253 * 0.02562 * 7 6 5 9 9 C 1.47195 * 120.16814 * 179.97438 * 8 7 6 10 10 C 1.34827 * 120.00212 * 46.56093 * 9 8 7 11 11 C 1.46388 * 120.00102 * 10.68776 * 10 9 8 12 12 O 1.21720 * 119.99689 * 6.89725 * 11 10 9 13 13 N 1.34776 * 120.00360 * 186.89441 * 11 10 9 14 14 C 1.39870 * 119.99875 * 175.41119 * 13 11 10 15 15 C 1.38953 * 120.00323 * 214.96782 * 14 13 11 16 16 C 1.37999 * 119.99386 * 179.79194 * 15 14 13 17 17 C 1.38910 * 120.00295 * 0.47327 * 16 15 14 18 18 O 1.35774 * 119.99359 * 179.76671 * 17 16 15 19 19 C 1.34825 * 116.99969 * 186.04675 * 18 17 16 20 20 H 1.07995 * 119.99726 * 5.54803 * 19 18 17 21 21 C 1.38631 * 119.99811 * 185.54608 * 19 18 17 22 22 N 1.31567 * 119.99586 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00227 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47152 * 90.00042 * 23 21 19 25 25 H 1.48504 * 109.47042 * 209.99943 * 23 21 19 26 26 H 1.48496 * 109.47024 * 330.00043 * 23 21 19 27 27 C 1.38910 * 120.01151 * 359.78300 * 17 16 15 28 28 C 1.38000 * 120.00362 * 359.97438 * 27 17 16 29 29 C 1.39838 * 119.65701 * 0.25615 * 8 7 6 30 30 C 1.37891 * 119.83149 * 359.46736 * 29 8 7 31 31 H 1.09005 * 109.46863 * 299.99544 * 1 2 3 32 32 H 1.09003 * 109.47180 * 59.99697 * 1 2 3 33 33 H 1.09002 * 109.47376 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47062 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47330 * 300.00211 * 3 2 1 36 36 H 1.09005 * 109.46870 * 60.00460 * 3 2 1 37 37 H 1.08997 * 109.47516 * 299.99657 * 4 2 1 38 38 H 1.09003 * 109.47209 * 60.00210 * 4 2 1 39 39 H 1.09004 * 109.46944 * 179.97438 * 4 2 1 40 40 H 1.08000 * 119.90913 * 359.97438 * 6 5 2 41 41 H 1.07999 * 120.09186 * 180.02562 * 7 6 5 42 42 H 1.08001 * 119.99712 * 226.83242 * 9 8 7 43 43 H 1.07999 * 120.00044 * 190.68786 * 10 9 8 44 44 H 0.97003 * 119.99464 * 355.41811 * 13 11 10 45 45 H 1.07997 * 120.00286 * 0.03705 * 15 14 13 46 46 H 1.08001 * 119.99336 * 180.21390 * 16 15 14 47 47 H 0.96999 * 119.99988 * 179.97438 * 22 21 19 48 48 H 1.08000 * 120.00354 * 179.97438 * 27 17 16 49 49 H 1.07999 * 120.00191 * 179.97438 * 28 27 17 50 50 H 1.08000 * 120.08416 * 179.74411 * 29 8 7 51 51 H 1.07995 * 119.91773 * 180.27234 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7106 1.2303 6 6 1.6958 -2.0356 1.4458 7 6 2.1519 -2.6928 2.5689 8 6 2.9562 -2.0167 3.4918 9 6 3.4468 -2.7107 4.6935 10 6 3.9853 -3.9423 4.5882 11 6 4.2978 -4.4941 3.2689 12 8 4.1902 -3.7973 2.2767 13 7 4.7047 -5.7737 3.1527 14 6 4.9109 -6.3297 1.8860 15 6 4.6158 -7.6683 1.6583 16 6 4.8153 -8.2156 0.4073 17 6 5.3203 -7.4309 -0.6217 18 8 5.5209 -7.9708 -1.8512 19 6 6.1288 -7.1930 -2.7695 20 1 6.5121 -6.2236 -2.4874 21 6 6.2616 -7.6376 -4.0759 22 7 6.8543 -6.8783 -4.9721 23 14 5.5991 -9.3147 -4.5637 24 1 4.1912 -9.1784 -5.0159 25 1 6.4222 -9.8700 -5.6680 26 1 5.6573 -10.2289 -3.3949 27 6 5.6204 -6.0941 -0.3929 28 6 5.4164 -5.5451 0.8566 29 6 3.2870 -0.6762 3.2699 30 6 2.8278 -0.0344 2.1391 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8901 37 1 1.6766 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1393 39 1 3.1299 -0.7209 -1.2496 40 1 1.0742 -2.5562 0.7323 41 1 1.8888 -3.7269 2.7355 42 1 3.3715 -2.2351 5.6603 43 1 4.1860 -4.5217 5.4773 44 1 4.8545 -6.3090 3.9477 45 1 4.2266 -8.2793 2.4592 46 1 4.5826 -9.2552 0.2294 47 1 6.9476 -7.1895 -5.8860 48 1 6.0135 -5.4842 -1.1929 49 1 5.6501 -4.5059 1.0346 50 1 3.9042 -0.1462 3.9802 51 1 3.0860 0.9995 1.9642 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098004454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:28 Heat of formation + Delta-G solvation = 10.420489 kcal Electronic energy + Delta-G solvation = -32081.340935 eV Core-core repulsion = 27911.968519 eV Total energy + Delta-G solvation = -4169.372416 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.178 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.42898 -39.64069 -38.78397 -37.03215 -36.21345 -33.94467 -33.38162 -32.30371 -31.04921 -30.26439 -29.37227 -28.00025 -27.45513 -27.27943 -25.30641 -24.14661 -22.61289 -22.25654 -21.98037 -20.71231 -19.64999 -19.12160 -18.02242 -17.57493 -17.25157 -16.64759 -16.06358 -15.32898 -15.12348 -14.78277 -14.62159 -14.35624 -14.20779 -14.00022 -13.85614 -13.79336 -13.73825 -13.54985 -13.32125 -13.26864 -12.73895 -12.67579 -12.39141 -12.26703 -12.14338 -12.08655 -11.77679 -11.75072 -11.65295 -11.59155 -11.42860 -11.03753 -10.92033 -10.76049 -10.64662 -10.53906 -10.22798 -9.88621 -9.68989 -9.60241 -9.29769 -8.78029 -8.62768 -8.27043 -7.99989 -7.02417 -6.39632 -4.05167 0.67991 1.59638 1.80546 2.10339 2.21464 3.22620 3.26560 3.36724 3.40113 3.42728 3.89920 4.24985 4.49681 4.51290 4.64463 4.67556 4.78517 4.88745 4.91093 5.05828 5.08994 5.11175 5.17093 5.24056 5.43778 5.46671 5.55751 5.57256 5.65034 5.66300 5.68380 5.79866 5.81675 5.84024 5.91649 5.94621 5.97868 6.11081 6.13405 6.14101 6.16789 6.21896 6.29698 6.30817 6.56641 6.62240 6.65623 6.74898 6.79823 6.94691 7.10784 7.14727 7.32983 7.59209 7.73113 7.81567 8.04669 8.42116 8.95541 9.57737 10.68108 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.008481 B = 0.002718 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.889732 B =10300.067667 C =12844.273072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.031 4.031 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.057 4.057 6 C -0.121 4.121 7 C -0.037 4.037 8 C -0.077 4.077 9 C -0.022 4.022 10 C -0.212 4.212 11 C 0.528 3.472 12 O -0.508 6.508 13 N -0.658 5.658 14 C 0.046 3.954 15 C -0.097 4.097 16 C -0.178 4.178 17 C 0.151 3.849 18 O -0.217 6.217 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.206 4.206 28 C -0.065 4.065 29 C -0.099 4.099 30 C -0.135 4.135 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.401 0.599 45 H 0.115 0.885 46 H 0.120 0.880 47 H 0.279 0.721 48 H 0.135 0.865 49 H 0.128 0.872 50 H 0.117 0.883 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 11.704 19.521 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 C -0.200 4.200 4 C -0.197 4.197 5 C -0.057 4.057 6 C -0.139 4.139 7 C -0.055 4.055 8 C -0.077 4.077 9 C -0.041 4.041 10 C -0.233 4.233 11 C 0.317 3.683 12 O -0.385 6.385 13 N -0.302 5.302 14 C -0.047 4.047 15 C -0.118 4.118 16 C -0.198 4.198 17 C 0.098 3.902 18 O -0.122 6.122 19 C -0.463 4.463 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.517 5.517 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.226 4.226 28 C -0.084 4.084 29 C -0.117 4.117 30 C -0.153 4.153 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.235 0.765 45 H 0.133 0.867 46 H 0.138 0.862 47 H 0.089 0.911 48 H 0.153 0.847 49 H 0.146 0.854 50 H 0.135 0.865 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.504 12.008 18.481 24.415 hybrid contribution 0.077 -0.999 0.106 1.008 sum -10.427 11.009 18.587 23.988 Atomic orbital electron populations 1.21882 0.93888 1.02082 1.01573 1.19526 0.95522 0.94957 0.93135 1.21954 1.01319 0.95069 1.01615 1.21895 1.01696 1.00379 0.95723 1.19833 0.96753 0.93958 0.95131 1.20755 1.01428 0.94168 0.97551 1.20972 0.94341 0.97650 0.92585 1.18794 0.99715 0.93774 0.95402 1.22377 0.91532 0.92796 0.97418 1.22953 1.05957 0.97628 0.96766 1.18511 0.78024 0.81808 0.89909 1.90928 1.51091 1.57741 1.38717 1.43196 1.66767 1.12828 1.07452 1.17301 1.08434 0.93246 0.85709 1.20360 1.01376 0.93627 0.96399 1.19972 1.08677 0.99770 0.91401 1.19157 0.93658 0.91390 0.85954 1.83581 1.69436 1.41506 1.17692 1.20767 1.34648 1.02125 0.88779 0.87669 1.24466 0.96207 0.99287 0.94073 1.69657 1.41435 1.37094 1.03516 0.86182 0.78964 0.83133 0.78625 1.19921 1.20802 1.18340 1.21231 1.08017 0.95388 0.97979 1.20923 0.95989 0.99641 0.91892 1.21078 0.99443 0.93406 0.97771 1.20932 0.99543 1.00068 0.94737 0.92697 0.92446 0.92387 0.92213 0.92502 0.92463 0.92182 0.92483 0.92214 0.86519 0.87121 0.84843 0.85083 0.76470 0.86663 0.86155 0.91077 0.84716 0.85442 0.86525 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.28 37.16 0.31 -0.96 16 2 C -0.03 -0.33 0.85 -155.66 -0.13 -0.46 16 3 C -0.14 -1.28 7.13 37.15 0.26 -1.02 16 4 C -0.14 -1.65 8.28 37.16 0.31 -1.34 16 5 C -0.06 -0.70 4.77 -104.50 -0.50 -1.20 16 6 C -0.12 -1.63 8.68 -39.65 -0.34 -1.97 16 7 C -0.04 -0.51 6.69 -39.11 -0.26 -0.77 16 8 C -0.08 -0.93 4.42 -105.06 -0.46 -1.40 16 9 C -0.02 -0.20 9.79 -37.16 -0.36 -0.57 16 10 C -0.21 -2.04 9.92 -37.51 -0.37 -2.42 16 11 C 0.53 7.25 6.73 -12.98 -0.09 7.16 16 12 O -0.51 -8.81 9.76 5.17 0.05 -8.76 16 13 N -0.66 -8.65 5.33 -11.09 -0.06 -8.71 16 14 C 0.05 0.78 6.30 -83.66 -0.53 0.26 16 15 C -0.10 -1.61 9.96 -39.40 -0.39 -2.00 16 16 C -0.18 -3.49 9.98 -39.42 -0.39 -3.88 16 17 C 0.15 3.52 6.65 -39.08 -0.26 3.26 16 18 O -0.22 -5.77 8.58 -0.01 0.00 -5.77 16 19 C -0.39 -11.07 9.89 30.88 0.31 -10.76 16 20 H 0.11 3.10 5.53 -52.49 -0.29 2.81 16 21 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 22 N -0.88 -25.68 13.96 55.48 0.77 -24.90 16 23 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.26 -6.23 7.11 56.52 0.40 -5.82 16 27 C -0.21 -4.68 9.12 -39.42 -0.36 -5.04 16 28 C -0.06 -1.29 8.68 -39.41 -0.34 -1.64 16 29 C -0.10 -1.13 9.80 -39.11 -0.38 -1.52 16 30 C -0.13 -1.57 8.96 -39.64 -0.36 -1.93 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.55 7.37 -51.93 -0.38 0.17 16 34 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.46 7.50 -51.93 -0.39 0.07 16 37 H 0.06 0.76 7.37 -51.93 -0.38 0.37 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.12 1.52 7.07 -52.49 -0.37 1.14 16 41 H 0.11 1.53 7.28 -52.49 -0.38 1.15 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.40 3.73 8.80 -40.82 -0.36 3.37 16 45 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 47 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.14 3.25 5.71 -52.49 -0.30 2.95 16 49 H 0.13 2.60 6.23 -52.49 -0.33 2.27 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 51 H 0.12 1.19 5.87 -52.49 -0.31 0.88 16 LS Contribution 413.52 15.07 6.23 6.23 Total: -1.00 -32.55 413.52 -9.56 -42.11 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.25 Total: 9.35 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -4.45 Total: -26.51 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.72 Total: -33.61 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.05 Total: -14.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.55 -9.56 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098004454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.532 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds