Wall clock time and date at job start Tue Mar 31 2020 07:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46795 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47067 * 299.99671 * 3 2 1 6 6 H 1.48496 * 109.47171 * 59.99706 * 3 2 1 7 7 C 1.40092 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99801 * 186.56055 * 7 2 1 9 9 C 1.46370 * 119.99873 * 6.55164 * 7 2 1 10 10 O 1.22059 * 120.00054 * 3.76973 * 9 7 2 11 11 N 1.34228 * 119.99711 * 183.77177 * 9 7 2 12 12 C 1.32541 * 119.99886 * 239.18153 * 11 9 7 13 13 S 1.76705 * 125.27800 * 189.19230 * 12 11 9 14 14 C 1.81900 * 95.97446 * 180.27668 * 13 12 11 15 15 H 1.08997 * 110.12711 * 116.09010 * 14 13 12 16 16 C 1.53999 * 109.56133 * 237.24647 * 14 13 12 17 17 S 1.83866 * 102.63318 * 142.46934 * 16 14 13 18 18 O 1.42098 * 109.80830 * 77.04028 * 17 16 14 19 19 O 1.42100 * 109.81259 * 211.35815 * 17 16 14 20 20 C 1.83042 * 93.97770 * 323.94593 * 17 16 14 21 21 C 1.52748 * 104.50995 * 357.81351 * 14 13 12 22 22 H 1.09000 * 107.88005 * 121.00957 * 21 14 13 23 23 N 1.34994 * 125.30102 * 8.13432 * 12 11 9 24 24 C 1.39752 * 120.86682 * 1.53246 * 23 12 11 25 25 C 1.38926 * 120.07676 * 249.63769 * 24 23 12 26 26 C 1.38096 * 119.92796 * 179.97438 * 25 24 23 27 27 C 1.38305 * 120.07198 * 359.97438 * 26 25 24 28 28 C 1.38300 * 120.14968 * 0.02562 * 27 26 25 29 29 C 1.38092 * 120.08034 * 359.97438 * 28 27 26 30 30 H 0.97002 * 119.99933 * 4.94756 * 1 2 3 31 31 H 1.09000 * 110.77971 * 260.75414 * 16 14 13 32 32 H 1.09000 * 110.77879 * 24.18715 * 16 14 13 33 33 H 1.09001 * 110.78031 * 276.55745 * 20 17 16 34 34 H 1.08996 * 110.27109 * 153.60835 * 20 17 16 35 35 H 1.08004 * 120.03890 * 359.95614 * 25 24 23 36 36 H 1.07996 * 119.96437 * 179.97438 * 26 25 24 37 37 H 1.07993 * 119.92444 * 179.72241 * 27 26 25 38 38 H 1.08003 * 119.95965 * 179.97438 * 28 27 26 39 39 H 1.08000 * 120.04184 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8816 2.3965 1.2124 7 6 2.0069 -1.2132 0.0005 8 1 3.0816 -1.2162 0.1074 9 6 1.2822 -2.4767 -0.1435 10 8 0.0764 -2.4706 -0.3331 11 7 1.9436 -3.6422 -0.0672 12 6 1.9199 -4.4859 -1.0891 13 16 2.5388 -6.1407 -1.0610 14 6 2.1250 -6.5271 -2.7897 15 1 3.0345 -6.7163 -3.3598 16 6 1.2066 -7.7624 -2.8363 17 16 0.0480 -7.3508 -4.2033 18 8 0.6908 -7.5480 -5.4551 19 8 -1.2220 -7.9362 -3.9510 20 6 -0.0027 -5.5674 -3.7942 21 6 1.4316 -5.2685 -3.3077 22 1 2.0022 -4.8986 -4.1596 23 7 1.4011 -4.2215 -2.3070 24 6 0.8540 -2.9685 -2.5967 25 6 -0.5167 -2.8321 -2.7771 26 6 -1.0541 -1.5925 -3.0628 27 6 -0.2293 -0.4874 -3.1688 28 6 1.1357 -0.6196 -2.9898 29 6 1.6797 -1.8563 -2.7040 30 1 -0.4850 0.8369 -0.0725 31 1 1.7781 -8.6604 -3.0710 32 1 0.6686 -7.8800 -1.8956 33 1 -0.7260 -5.3727 -3.0024 34 1 -0.2371 -4.9825 -4.6835 35 1 -1.1614 -3.6947 -2.6944 36 1 -2.1195 -1.4859 -3.2035 37 1 -0.6515 0.4801 -3.3967 38 1 1.7770 0.2453 -3.0737 39 1 2.7457 -1.9589 -2.5647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101310897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:01 Heat of formation + Delta-G solvation = -2.074962 kcal Electronic energy + Delta-G solvation = -30041.707120 eV Core-core repulsion = 25977.064488 eV Total energy + Delta-G solvation = -4064.642631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.44879 -37.78907 -37.27980 -36.86116 -36.30507 -34.56261 -32.66872 -31.98896 -30.34484 -29.75469 -29.33685 -26.62290 -25.56914 -24.10752 -21.97656 -21.81037 -21.01894 -19.32651 -19.04108 -17.94551 -17.43148 -16.74507 -16.41684 -16.02396 -15.90099 -15.72547 -15.61344 -15.21108 -14.64197 -14.26072 -13.90984 -13.61351 -13.51354 -13.41688 -13.19734 -12.72129 -12.66433 -12.46723 -12.37595 -12.31434 -12.12912 -11.86339 -11.57412 -11.33555 -11.21657 -11.11168 -10.87630 -10.72360 -10.53200 -10.43161 -10.35166 -10.22778 -9.24495 -9.07020 -8.30653 -7.95746 -7.77617 -7.46978 -7.28165 -6.31634 -4.72295 -0.32105 1.20231 1.81193 2.07491 2.15883 2.28025 2.55400 2.99769 3.11010 3.13076 3.15685 3.22493 3.54408 3.70722 3.99421 4.07385 4.18782 4.35734 4.47471 4.55745 4.62525 4.99067 5.16362 5.26274 5.37986 5.43620 5.69774 5.70260 5.84529 6.08077 6.23421 6.35208 6.44097 6.79550 7.07297 7.10352 7.27694 7.32456 7.34833 7.37206 7.88431 8.08202 8.50709 8.86016 9.06704 10.35960 10.56030 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.004104 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.851848 B = 6820.917414 C = 7675.264698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.093 3.907 3 Si 0.888 3.112 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.495 4.495 8 H 0.066 0.934 9 C 0.498 3.502 10 O -0.542 6.542 11 N -0.547 5.547 12 C 0.393 3.607 13 S -0.038 6.038 14 C -0.090 4.090 15 H 0.144 0.856 16 C -0.565 4.565 17 S 2.392 3.608 18 O -0.924 6.924 19 O -0.928 6.928 20 C -0.601 4.601 21 C 0.156 3.844 22 H 0.108 0.892 23 N -0.566 5.566 24 C 0.135 3.865 25 C -0.070 4.070 26 C -0.111 4.111 27 C -0.095 4.095 28 C -0.096 4.096 29 C -0.073 4.073 30 H 0.268 0.732 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -9.645 -10.812 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.130 4.130 3 Si 0.712 3.288 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.085 0.915 9 C 0.303 3.697 10 O -0.425 6.425 11 N -0.288 5.288 12 C 0.011 3.989 13 S 0.193 5.807 14 C -0.221 4.221 15 H 0.162 0.838 16 C -0.695 4.695 17 S 2.573 3.427 18 O -0.922 6.922 19 O -0.924 6.924 20 C -0.731 4.731 21 C 0.048 3.952 22 H 0.126 0.874 23 N -0.285 5.285 24 C 0.042 3.958 25 C -0.090 4.090 26 C -0.130 4.130 27 C -0.113 4.113 28 C -0.115 4.115 29 C -0.093 4.093 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.173 -10.622 -9.845 14.645 hybrid contribution 0.089 2.527 -0.306 2.547 sum 2.262 -8.095 -10.151 13.179 Atomic orbital electron populations 1.69979 1.06845 1.27422 1.31882 1.25611 0.94472 0.99706 0.93175 0.86606 0.81143 0.82468 0.78580 1.18595 1.19732 1.20089 1.21140 0.94158 0.89257 1.48435 0.91527 1.18870 0.87477 0.84700 0.78637 1.90757 1.15403 1.88108 1.48236 1.69384 1.27166 1.08686 1.23556 1.23868 0.93544 0.96367 0.85143 1.86449 1.77498 1.06917 1.09803 1.23977 1.03249 0.94173 1.00651 0.83774 1.30712 1.13999 1.03995 1.20832 1.09191 0.76776 0.79318 0.77411 1.93651 1.76720 1.84172 1.37607 1.93641 1.38195 1.74516 1.86091 1.31175 1.04628 1.24577 1.12759 1.20881 0.93278 0.87865 0.93217 0.87444 1.44252 1.63243 1.11485 1.09549 1.17040 0.91730 0.82991 1.03994 1.20752 0.92820 0.97277 0.98121 1.20532 0.98338 0.92443 1.01647 1.20757 0.93638 0.97382 0.99538 1.20515 0.94934 0.95937 1.00111 1.20818 0.98781 0.92284 0.97455 0.92076 0.83239 0.82776 0.82880 0.83309 0.87555 0.87443 0.87778 0.87510 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.50 11.69 55.55 0.65 -18.85 16 2 C 0.09 2.35 3.90 -17.36 -0.07 2.29 16 3 Si 0.89 18.93 29.57 -169.99 -5.03 13.90 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.49 -13.31 7.61 -35.62 -0.27 -13.58 16 8 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 9 C 0.50 13.59 4.40 -13.23 -0.06 13.53 16 10 O -0.54 -15.68 12.00 4.86 0.06 -15.63 16 11 N -0.55 -13.60 10.52 -13.34 -0.14 -13.74 16 12 C 0.39 7.81 7.96 -88.69 -0.71 7.11 16 13 S -0.04 -0.54 22.42 -107.50 -2.41 -2.95 16 14 C -0.09 -0.85 3.66 -26.34 -0.10 -0.94 16 15 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.57 -4.04 6.92 37.68 0.26 -3.78 16 17 S 2.39 21.14 6.06 -107.50 -0.65 20.49 16 18 O -0.92 -10.22 18.17 -57.67 -1.05 -11.27 16 19 O -0.93 -11.50 18.16 -57.67 -1.05 -12.55 16 20 C -0.60 -6.02 5.42 37.88 0.21 -5.82 16 21 C 0.16 1.83 3.20 -68.22 -0.22 1.61 16 22 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 23 N -0.57 -9.79 2.66 -107.67 -0.29 -10.08 16 24 C 0.13 2.63 2.86 -83.73 -0.24 2.39 16 25 C -0.07 -1.34 6.90 -39.38 -0.27 -1.61 16 26 C -0.11 -2.09 9.98 -39.61 -0.40 -2.49 16 27 C -0.09 -1.79 9.86 -39.53 -0.39 -2.18 16 28 C -0.10 -1.89 8.24 -39.61 -0.33 -2.21 16 29 C -0.07 -1.48 6.30 -39.38 -0.25 -1.73 16 30 H 0.27 6.59 8.30 -40.82 -0.34 6.25 16 31 H 0.15 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.15 1.11 7.80 -51.93 -0.41 0.70 16 33 H 0.15 1.74 6.16 -51.93 -0.32 1.42 16 34 H 0.15 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.11 1.88 5.78 -52.48 -0.30 1.58 16 36 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.11 1.96 8.06 -52.48 -0.42 1.54 16 39 H 0.11 2.25 8.02 -52.49 -0.42 1.83 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -37.64 340.45 -11.55 -49.19 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -3.96 Total: 3.78 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.82 Total: -7.43 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.22 Total: -42.67 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -2.04 Total: -39.44 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 16 Polarization: 20.60 SS G_CDS: -3.06 Total: 17.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.64 -11.55 -49.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101310897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.117 kcal (2) G-P(sol) polarization free energy of solvation -37.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds