Wall clock time and date at job start Tue Mar 31 2020 07:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46795 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47067 * 299.99671 * 3 2 1 6 6 H 1.48496 * 109.47171 * 59.99706 * 3 2 1 7 7 C 1.40092 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99801 * 186.56055 * 7 2 1 9 9 C 1.46370 * 119.99873 * 6.55164 * 7 2 1 10 10 O 1.22059 * 120.00054 * 3.76973 * 9 7 2 11 11 N 1.34228 * 119.99711 * 183.77177 * 9 7 2 12 12 C 1.32541 * 119.99886 * 239.18153 * 11 9 7 13 13 S 1.76705 * 125.27800 * 189.19230 * 12 11 9 14 14 C 1.81900 * 95.97446 * 180.27668 * 13 12 11 15 15 H 1.08997 * 110.12711 * 116.09010 * 14 13 12 16 16 C 1.53999 * 109.56133 * 237.24647 * 14 13 12 17 17 S 1.83866 * 102.63318 * 142.46934 * 16 14 13 18 18 O 1.42098 * 109.80830 * 77.04028 * 17 16 14 19 19 O 1.42100 * 109.81259 * 211.35815 * 17 16 14 20 20 C 1.83042 * 93.97770 * 323.94593 * 17 16 14 21 21 C 1.52748 * 104.50995 * 357.81351 * 14 13 12 22 22 H 1.09000 * 107.88005 * 121.00957 * 21 14 13 23 23 N 1.34994 * 125.30102 * 8.13432 * 12 11 9 24 24 C 1.39752 * 120.86682 * 1.53246 * 23 12 11 25 25 C 1.38926 * 120.07676 * 249.63769 * 24 23 12 26 26 C 1.38096 * 119.92796 * 179.97438 * 25 24 23 27 27 C 1.38305 * 120.07198 * 359.97438 * 26 25 24 28 28 C 1.38300 * 120.14968 * 0.02562 * 27 26 25 29 29 C 1.38092 * 120.08034 * 359.97438 * 28 27 26 30 30 H 0.97002 * 119.99933 * 4.94756 * 1 2 3 31 31 H 1.09000 * 110.77971 * 260.75414 * 16 14 13 32 32 H 1.09000 * 110.77879 * 24.18715 * 16 14 13 33 33 H 1.09001 * 110.78031 * 276.55745 * 20 17 16 34 34 H 1.08996 * 110.27109 * 153.60835 * 20 17 16 35 35 H 1.08004 * 120.03890 * 359.95614 * 25 24 23 36 36 H 1.07996 * 119.96437 * 179.97438 * 26 25 24 37 37 H 1.07993 * 119.92444 * 179.72241 * 27 26 25 38 38 H 1.08003 * 119.95965 * 179.97438 * 28 27 26 39 39 H 1.08000 * 120.04184 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8816 2.3965 1.2124 7 6 2.0069 -1.2132 0.0005 8 1 3.0816 -1.2162 0.1074 9 6 1.2822 -2.4767 -0.1435 10 8 0.0764 -2.4706 -0.3331 11 7 1.9436 -3.6422 -0.0672 12 6 1.9199 -4.4859 -1.0891 13 16 2.5388 -6.1407 -1.0610 14 6 2.1250 -6.5271 -2.7897 15 1 3.0345 -6.7163 -3.3598 16 6 1.2066 -7.7624 -2.8363 17 16 0.0480 -7.3508 -4.2033 18 8 0.6908 -7.5480 -5.4551 19 8 -1.2220 -7.9362 -3.9510 20 6 -0.0027 -5.5674 -3.7942 21 6 1.4316 -5.2685 -3.3077 22 1 2.0022 -4.8986 -4.1596 23 7 1.4011 -4.2215 -2.3070 24 6 0.8540 -2.9685 -2.5967 25 6 -0.5167 -2.8321 -2.7771 26 6 -1.0541 -1.5925 -3.0628 27 6 -0.2293 -0.4874 -3.1688 28 6 1.1357 -0.6196 -2.9898 29 6 1.6797 -1.8563 -2.7040 30 1 -0.4850 0.8369 -0.0725 31 1 1.7781 -8.6604 -3.0710 32 1 0.6686 -7.8800 -1.8956 33 1 -0.7260 -5.3727 -3.0024 34 1 -0.2371 -4.9825 -4.6835 35 1 -1.1614 -3.6947 -2.6944 36 1 -2.1195 -1.4859 -3.2035 37 1 -0.6515 0.4801 -3.3967 38 1 1.7770 0.2453 -3.0737 39 1 2.7457 -1.9589 -2.5647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101310897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:00 Heat of formation + Delta-G solvation = -31.170395 kcal Electronic energy + Delta-G solvation = -30042.968792 eV Core-core repulsion = 25977.064488 eV Total energy + Delta-G solvation = -4065.904304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84698 -39.06259 -38.56036 -38.18136 -37.16577 -35.92469 -34.53192 -33.50832 -31.73793 -30.84999 -30.72606 -28.46054 -26.54272 -25.62812 -23.42872 -22.98893 -22.54183 -20.69319 -19.98493 -19.09615 -18.94907 -17.80192 -17.66416 -17.41269 -16.99426 -16.95126 -16.74021 -16.55344 -16.05881 -15.71202 -15.24967 -15.23243 -14.85765 -14.57330 -14.37064 -14.11523 -14.02007 -13.62039 -13.40146 -13.24409 -13.21050 -13.11916 -13.00612 -12.78757 -12.69890 -12.51616 -12.33410 -12.12365 -12.00846 -11.81590 -11.67530 -11.38191 -11.01774 -10.91659 -9.78362 -9.50641 -9.41793 -8.94816 -8.89714 -8.20507 -6.72809 -1.09131 0.02569 0.49320 0.71360 0.80964 1.03678 1.31604 1.36158 1.37315 1.46904 1.93886 2.21735 2.41203 2.49536 2.77951 2.81149 3.06280 3.30391 3.36658 3.50882 3.75338 3.89907 4.11629 4.22761 4.31741 4.35686 4.43369 4.55185 4.62823 4.68653 4.75990 4.87680 4.91467 5.30058 5.31596 5.58443 5.64191 5.81804 5.83873 5.95499 6.09146 6.39300 6.71385 6.91406 7.28944 8.45806 8.66596 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.004104 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.851848 B = 6820.917414 C = 7675.264698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.065 3.935 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.251 1.251 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.502 3.498 10 O -0.577 6.577 11 N -0.616 5.616 12 C 0.390 3.610 13 S -0.012 6.012 14 C -0.082 4.082 15 H 0.191 0.809 16 C -0.550 4.550 17 S 2.430 3.570 18 O -0.939 6.939 19 O -0.962 6.962 20 C -0.607 4.607 21 C 0.139 3.861 22 H 0.134 0.866 23 N -0.565 5.565 24 C 0.131 3.869 25 C -0.081 4.081 26 C -0.118 4.118 27 C -0.102 4.102 28 C -0.104 4.104 29 C -0.088 4.088 30 H 0.273 0.727 31 H 0.195 0.805 32 H 0.159 0.841 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 -11.319 -12.627 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.155 4.155 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.175 1.175 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.070 0.930 9 C 0.307 3.693 10 O -0.463 6.463 11 N -0.360 5.360 12 C 0.010 3.990 13 S 0.219 5.781 14 C -0.213 4.213 15 H 0.208 0.792 16 C -0.682 4.682 17 S 2.613 3.387 18 O -0.936 6.936 19 O -0.959 6.959 20 C -0.736 4.736 21 C 0.032 3.968 22 H 0.152 0.848 23 N -0.282 5.282 24 C 0.038 3.962 25 C -0.101 4.101 26 C -0.137 4.137 27 C -0.120 4.120 28 C -0.123 4.123 29 C -0.108 4.108 30 H 0.084 0.916 31 H 0.212 0.788 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.016 -12.329 -11.733 17.285 hybrid contribution -0.151 2.808 0.170 2.817 sum 2.865 -9.522 -11.563 15.250 Atomic orbital electron populations 1.70065 1.08231 1.28494 1.32640 1.26236 0.95042 1.02230 0.91986 0.85709 0.79652 0.78490 0.79287 1.18756 1.17515 1.19969 1.21263 0.93525 0.90691 1.50422 0.93037 1.18932 0.87110 0.85806 0.77409 1.90688 1.16609 1.88999 1.50019 1.69206 1.31162 1.09560 1.26110 1.24731 0.91589 0.97851 0.84806 1.86343 1.76221 1.01833 1.13691 1.24419 1.05437 0.93836 0.97585 0.79181 1.30737 1.13107 1.04585 1.19747 1.08078 0.75930 0.77648 0.77075 1.93630 1.76839 1.84001 1.39175 1.93601 1.40721 1.74860 1.86704 1.31198 1.03030 1.26571 1.12842 1.21376 0.95140 0.87681 0.92575 0.84797 1.44529 1.61703 1.12116 1.09893 1.17138 0.91954 0.83909 1.03202 1.20949 0.92928 0.97930 0.98309 1.20866 0.99412 0.92443 1.00996 1.20990 0.93416 0.98287 0.99341 1.20673 0.95546 0.95977 1.00124 1.20833 0.98311 0.93166 0.98514 0.91626 0.78775 0.82257 0.84390 0.81896 0.86660 0.85641 0.85942 0.86837 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -41.67 11.69 21.84 0.26 -41.41 16 2 C 0.07 3.38 3.90 85.32 0.33 3.71 16 3 Si 0.95 39.32 29.57 68.60 2.03 41.34 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.52 -29.40 7.61 24.84 0.19 -29.21 16 8 H 0.05 2.92 7.86 -2.91 -0.02 2.90 16 9 C 0.50 28.54 4.40 86.44 0.38 28.92 16 10 O -0.58 -34.68 12.00 -5.51 -0.07 -34.75 16 11 N -0.62 -31.76 10.52 -314.49 -3.31 -35.07 16 12 C 0.39 15.56 7.96 179.67 1.43 16.99 16 13 S -0.01 -0.32 22.42 -56.49 -1.27 -1.59 16 14 C -0.08 -1.21 3.66 30.85 0.11 -1.09 16 15 H 0.19 1.23 8.14 -2.39 -0.02 1.21 16 16 C -0.55 -5.21 6.92 72.32 0.50 -4.71 16 17 S 2.43 35.27 6.06 -56.49 -0.34 34.93 16 18 O -0.94 -17.34 18.17 -127.53 -2.32 -19.66 16 19 O -0.96 -21.82 18.16 -127.53 -2.32 -24.14 16 20 C -0.61 -10.98 5.42 72.45 0.39 -10.59 16 21 C 0.14 2.89 3.20 45.68 0.15 3.04 16 22 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 23 N -0.56 -19.27 2.66 -494.54 -1.31 -20.58 16 24 C 0.13 5.17 2.86 38.21 0.11 5.28 16 25 C -0.08 -3.16 6.90 22.40 0.15 -3.01 16 26 C -0.12 -4.49 9.98 22.25 0.22 -4.27 16 27 C -0.10 -3.87 9.86 22.30 0.22 -3.65 16 28 C -0.10 -4.16 8.24 22.25 0.18 -3.98 16 29 C -0.09 -3.67 6.30 22.40 0.14 -3.53 16 30 H 0.27 13.63 8.30 -92.71 -0.77 12.86 16 31 H 0.19 0.26 8.14 -2.39 -0.02 0.25 16 32 H 0.16 1.60 7.80 -2.39 -0.02 1.58 16 33 H 0.14 3.03 6.16 -2.39 -0.01 3.01 16 34 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.12 4.13 5.78 -2.91 -0.02 4.11 16 36 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.10 4.17 8.02 -2.91 -0.02 4.15 16 Total: -1.00 -86.55 340.45 -3.02 -89.57 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.11 Total: 17.44 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 4.52 Total: -6.08 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.37 Total: -97.07 kcal Atomic # 8 Polarization: -73.85 SS G_CDS: -4.70 Total: -78.55 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 16 Polarization: 34.95 SS G_CDS: -1.61 Total: 33.34 kcal Total: -86.55 -3.02 -89.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101310897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.399 kcal (2) G-P(sol) polarization free energy of solvation -86.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds