Wall clock time and date at job start Tue Mar 31 2020 07:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86796 * 119.99878 * 2 1 4 4 H 1.48505 * 109.47205 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46870 * 120.00192 * 3 2 1 7 7 C 1.40086 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00261 * 170.70162 * 7 2 1 9 9 C 1.46370 * 120.00436 * 350.70226 * 7 2 1 10 10 O 1.22062 * 119.99850 * 353.96080 * 9 7 2 11 11 N 1.34232 * 120.00789 * 173.96172 * 9 7 2 12 12 C 1.32532 * 120.00543 * 126.77534 * 11 9 7 13 13 S 1.78808 * 126.11377 * 172.55640 * 12 11 9 14 14 C 1.81259 * 92.57069 * 159.87240 * 13 12 11 15 15 H 1.09000 * 112.14800 * 278.17222 * 14 13 12 16 16 C 1.52345 * 117.04780 * 146.66844 * 14 13 12 17 17 S 1.84590 * 100.78067 * 205.62101 * 16 14 13 18 18 O 1.42097 * 109.40702 * 271.31524 * 17 16 14 19 19 O 1.42109 * 109.53147 * 138.00756 * 17 16 14 20 20 C 1.84229 * 96.68649 * 24.64703 * 17 16 14 21 21 C 1.51128 * 103.03896 * 6.42742 * 20 17 16 22 22 H 1.09007 * 106.24344 * 76.03882 * 21 20 17 23 23 N 1.38551 * 126.10787 * 352.58516 * 12 11 9 24 24 C 1.39749 * 123.17561 * 352.87132 * 23 12 11 25 25 C 1.38937 * 120.07602 * 114.26233 * 24 23 12 26 26 C 1.38095 * 119.91844 * 179.74458 * 25 24 23 27 27 C 1.38294 * 120.08125 * 0.50642 * 26 25 24 28 28 C 1.38305 * 120.14824 * 359.77225 * 27 26 25 29 29 C 1.38087 * 120.07826 * 359.97297 * 28 27 26 30 30 H 0.97002 * 120.00158 * 5.06673 * 1 2 3 31 31 H 1.08995 * 111.15383 * 87.74003 * 16 14 13 32 32 H 1.09001 * 111.15243 * 323.50250 * 16 14 13 33 33 H 1.08999 * 110.70215 * 124.81979 * 20 17 16 34 34 H 1.09003 * 110.69619 * 248.04356 * 20 17 16 35 35 H 1.07991 * 120.03508 * 359.97438 * 25 24 23 36 36 H 1.08006 * 119.95886 * 180.25454 * 26 25 24 37 37 H 1.07994 * 119.92587 * 179.74293 * 27 26 25 38 38 H 1.08001 * 119.95691 * 179.97438 * 28 27 26 39 39 H 1.07997 * 120.03754 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0941 1.6963 1.2126 7 6 2.0068 -1.2132 -0.0005 8 1 3.0762 -1.2194 -0.1517 9 6 1.2894 -2.4726 0.2037 10 8 0.1014 -2.4598 0.4838 11 7 1.9378 -3.6417 0.0830 12 6 1.8885 -4.5313 1.0642 13 16 2.5266 -6.2006 1.0063 14 6 2.5845 -6.3282 2.8135 15 1 3.4800 -5.8665 3.2296 16 6 2.3137 -7.6991 3.4202 17 16 1.6941 -7.2206 5.0919 18 8 2.7917 -7.1058 5.9872 19 8 0.5806 -8.0334 5.4366 20 6 1.1037 -5.5382 4.6283 21 6 1.2857 -5.5143 3.1283 22 1 0.4717 -6.1085 2.7128 23 7 1.3327 -4.3341 2.3180 24 6 0.8679 -3.0931 2.7618 25 6 -0.4861 -2.9049 3.0100 26 6 -0.9412 -1.6789 3.4536 27 6 -0.0524 -0.6360 3.6407 28 6 1.2953 -0.8182 3.3890 29 6 1.7580 -2.0430 2.9503 30 1 -0.4850 0.8368 -0.0742 31 1 3.2299 -8.2850 3.4931 32 1 1.5502 -8.2350 2.8563 33 1 0.0533 -5.4125 4.8911 34 1 1.7153 -4.7709 5.1030 35 1 -1.1812 -3.7176 2.8598 36 1 -1.9930 -1.5331 3.6507 37 1 -0.4116 0.3230 3.9837 38 1 1.9865 -0.0015 3.5358 39 1 2.8104 -2.1845 2.7536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101310901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:11 Heat of formation + Delta-G solvation = -3.480889 kcal Electronic energy + Delta-G solvation = -29661.700223 eV Core-core repulsion = 25596.996627 eV Total energy + Delta-G solvation = -4064.703597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -40.24245 -37.86305 -37.43261 -37.06649 -36.40352 -34.57890 -32.74155 -31.99314 -30.31598 -30.11777 -29.42530 -26.66872 -25.13348 -23.73540 -22.47191 -21.81266 -20.81972 -19.36008 -19.07402 -17.86417 -17.67570 -17.10883 -16.38936 -16.11933 -15.94776 -15.66408 -15.39196 -15.19067 -14.69608 -14.35560 -14.05074 -13.76421 -13.61747 -13.46876 -13.01062 -12.78035 -12.64113 -12.52441 -12.45283 -12.40817 -12.26309 -11.82924 -11.47726 -11.45940 -11.19494 -11.14220 -11.00250 -10.81303 -10.63502 -10.54797 -10.42285 -10.20659 -9.36431 -9.01713 -8.42783 -8.14073 -7.77830 -7.60148 -7.38625 -6.35746 -4.77201 -0.49540 1.19948 1.68618 1.95042 2.07655 2.16884 2.41896 3.03142 3.09235 3.10531 3.13548 3.15287 3.57512 3.69069 3.98942 3.99636 4.09673 4.35284 4.40717 4.45404 4.51479 4.96158 5.13579 5.26491 5.33887 5.43211 5.55409 5.59296 5.73104 6.00881 6.13271 6.24254 6.32451 6.67031 6.93894 6.99415 7.20618 7.25023 7.26291 7.29770 7.79354 8.04953 8.47074 8.82860 8.95522 10.32887 10.52757 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.003947 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.002599 B = 7092.756518 C = 7951.338189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.093 3.907 3 Si 0.896 3.104 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.494 4.494 8 H 0.068 0.932 9 C 0.492 3.508 10 O -0.544 6.544 11 N -0.524 5.524 12 C 0.398 3.602 13 S -0.035 6.035 14 C -0.125 4.125 15 H 0.135 0.865 16 C -0.548 4.548 17 S 2.390 3.610 18 O -0.922 6.922 19 O -0.923 6.923 20 C -0.572 4.572 21 C 0.147 3.853 22 H 0.083 0.917 23 N -0.569 5.569 24 C 0.160 3.840 25 C -0.075 4.075 26 C -0.106 4.106 27 C -0.110 4.110 28 C -0.098 4.098 29 C -0.095 4.095 30 H 0.271 0.729 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -9.888 10.812 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.529 4.529 8 H 0.087 0.913 9 C 0.297 3.703 10 O -0.428 6.428 11 N -0.263 5.263 12 C 0.017 3.983 13 S 0.196 5.804 14 C -0.257 4.257 15 H 0.153 0.847 16 C -0.678 4.678 17 S 2.570 3.430 18 O -0.919 6.919 19 O -0.920 6.920 20 C -0.702 4.702 21 C 0.038 3.962 22 H 0.101 0.899 23 N -0.290 5.290 24 C 0.068 3.932 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.116 4.116 29 C -0.115 4.115 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.742 -10.860 10.093 15.077 hybrid contribution -0.034 2.553 0.184 2.559 sum 2.708 -8.308 10.277 13.489 Atomic orbital electron populations 1.69919 1.07037 1.27892 1.31900 1.25662 0.94517 0.99950 0.92823 0.86586 0.80223 0.81269 0.79869 1.19154 1.20323 1.18932 1.20962 0.94806 0.89018 1.48133 0.91333 1.18981 0.87418 0.84578 0.79274 1.90762 1.16673 1.88118 1.47207 1.69541 1.25864 1.06473 1.24413 1.25091 0.92925 0.95888 0.84414 1.86787 1.82804 1.09182 1.01640 1.24895 1.03472 0.97061 1.00287 0.84659 1.30152 1.14177 1.02022 1.21409 1.09593 0.76379 0.78540 0.78496 1.93651 1.52752 1.85684 1.59765 1.93646 1.51804 1.64793 1.81736 1.30256 1.14314 1.23691 1.01937 1.20795 0.95975 0.88540 0.90934 0.89949 1.44290 1.65503 1.06918 1.12301 1.17058 0.92150 0.84055 0.99921 1.20695 0.93226 0.97435 0.98137 1.20646 0.98544 0.92851 1.00401 1.20854 0.93493 0.97874 1.00605 1.20639 0.95514 0.95986 0.99500 1.20931 0.98640 0.93259 0.98700 0.91811 0.83057 0.82880 0.83018 0.83326 0.87410 0.87068 0.87327 0.87073 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.15 11.93 55.55 0.66 -19.49 16 2 C 0.09 2.41 5.47 -17.37 -0.10 2.31 16 3 Si 0.90 19.19 29.57 -169.99 -5.03 14.16 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.49 -13.45 8.65 -35.62 -0.31 -13.76 16 8 H 0.07 1.83 7.87 -52.48 -0.41 1.42 16 9 C 0.49 13.54 4.64 -13.23 -0.06 13.47 16 10 O -0.54 -15.92 12.16 4.86 0.06 -15.86 16 11 N -0.52 -13.06 10.52 -11.93 -0.13 -13.18 16 12 C 0.40 8.00 7.98 -85.36 -0.68 7.32 16 13 S -0.04 -0.50 22.79 -107.50 -2.45 -2.95 16 14 C -0.13 -1.27 3.53 -25.19 -0.09 -1.35 16 15 H 0.14 1.20 8.14 -51.93 -0.42 0.77 16 16 C -0.55 -3.56 6.88 36.82 0.25 -3.30 16 17 S 2.39 19.11 6.12 -107.50 -0.66 18.45 16 18 O -0.92 -10.11 18.16 -57.72 -1.05 -11.16 16 19 O -0.92 -10.11 18.16 -57.72 -1.05 -11.15 16 20 C -0.57 -5.06 6.80 36.22 0.25 -4.81 16 21 C 0.15 1.79 2.45 -68.73 -0.17 1.62 16 22 H 0.08 0.93 7.78 -51.92 -0.40 0.52 16 23 N -0.57 -10.05 2.88 -106.67 -0.31 -10.36 16 24 C 0.16 3.14 2.72 -83.73 -0.23 2.91 16 25 C -0.07 -1.44 8.20 -39.38 -0.32 -1.77 16 26 C -0.11 -1.95 10.04 -39.61 -0.40 -2.34 16 27 C -0.11 -2.01 10.04 -39.54 -0.40 -2.41 16 28 C -0.10 -1.87 10.04 -39.61 -0.40 -2.26 16 29 C -0.09 -1.90 7.28 -39.38 -0.29 -2.19 16 30 H 0.27 6.83 8.30 -40.82 -0.34 6.49 16 31 H 0.15 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.15 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.15 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 36 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 39 H 0.11 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -37.95 353.28 -11.73 -49.68 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.18 Total: 3.11 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.93 Total: -6.57 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.23 Total: -43.02 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -2.04 Total: -38.17 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: 18.60 SS G_CDS: -3.11 Total: 15.50 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.95 -11.73 -49.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101310901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.196 kcal (2) G-P(sol) polarization free energy of solvation -37.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds