Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46817 * 2 1 4 4 C 1.50698 * 109.47325 * 240.00238 * 2 1 3 5 5 H 1.08000 * 119.99648 * 245.83486 * 4 2 1 6 6 C 1.37872 * 119.99881 * 65.55557 * 4 2 1 7 7 N 1.31511 * 120.00296 * 355.56484 * 6 4 2 8 8 Si 1.86806 * 119.99966 * 175.56305 * 6 4 2 9 9 H 1.48508 * 109.47040 * 94.99752 * 8 6 4 10 10 H 1.48490 * 109.47268 * 214.99893 * 8 6 4 11 11 H 1.48503 * 109.46796 * 335.00082 * 8 6 4 12 12 S 1.81405 * 109.47085 * 120.00075 * 2 1 3 13 13 C 1.76196 * 102.99994 * 288.70651 * 12 2 1 14 14 C 1.38792 * 120.10468 * 355.31432 * 13 12 2 15 15 C 1.38198 * 119.98631 * 179.76700 * 14 13 12 16 16 C 1.38300 * 120.20458 * 0.48360 * 15 14 13 17 17 C 1.38250 * 120.20344 * 359.79097 * 16 15 14 18 18 C 1.38648 * 120.01219 * 359.95383 * 17 16 15 19 19 N 1.40142 * 120.10080 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99972 * 33.38953 * 19 18 17 21 21 O 1.21301 * 119.99891 * 5.63214 * 20 19 18 22 22 C 1.50698 * 119.99991 * 185.62800 * 20 19 18 23 23 N 1.46902 * 109.47142 * 180.02562 * 22 20 19 24 24 C 1.47015 * 111.00394 * 66.04538 * 23 22 20 25 25 C 1.53095 * 109.26102 * 182.39207 * 24 23 22 26 26 O 1.43011 * 109.25973 * 303.15336 * 25 24 23 27 27 C 1.43019 * 113.74082 * 58.66705 * 26 25 24 28 28 C 1.47015 * 111.00105 * 189.68118 * 23 22 20 29 29 H 1.08995 * 109.50626 * 297.54178 * 28 23 22 30 30 C 1.53008 * 109.50681 * 57.67435 * 28 23 22 31 31 H 1.09007 * 109.46891 * 173.25832 * 1 2 3 32 32 H 1.09003 * 109.47161 * 293.25356 * 1 2 3 33 33 H 1.09000 * 109.47128 * 53.26139 * 1 2 3 34 34 H 0.97005 * 120.00184 * 180.02562 * 7 6 4 35 35 H 1.07993 * 120.00408 * 359.97438 * 14 13 12 36 36 H 1.08004 * 119.89624 * 180.25019 * 15 14 13 37 37 H 1.07991 * 119.90070 * 179.76522 * 16 15 14 38 38 H 1.08007 * 119.99591 * 179.97438 * 17 16 15 39 39 H 0.97002 * 120.00174 * 213.39327 * 19 18 17 40 40 H 1.09003 * 109.47451 * 299.99759 * 22 20 19 41 41 H 1.09003 * 109.47239 * 60.00485 * 22 20 19 42 42 H 1.09000 * 109.50263 * 302.33274 * 24 23 22 43 43 H 1.09004 * 109.50435 * 62.41570 * 24 23 22 44 44 H 1.09001 * 109.50438 * 63.08584 * 25 24 23 45 45 H 1.08999 * 109.50512 * 183.21550 * 25 24 23 46 46 H 1.09004 * 109.50153 * 61.26648 * 27 26 25 47 47 H 1.08997 * 109.51128 * 181.34936 * 27 26 25 48 48 H 1.08997 * 109.46903 * 59.99771 * 30 28 23 49 49 H 1.08997 * 109.46920 * 180.02562 * 30 28 23 50 50 H 1.08997 * 109.46488 * 300.00109 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5734 -1.6401 -1.1341 6 6 1.7964 -0.1762 -2.4794 7 7 1.0589 0.9056 -2.6034 8 14 2.5242 -0.9892 -3.9957 9 1 1.5241 -1.9116 -4.5910 10 1 2.8894 0.0526 -4.9888 11 1 3.7375 -1.7549 -3.6125 12 16 2.1347 -0.8552 1.4812 13 6 1.7477 0.2745 2.7768 14 6 1.2123 1.5196 2.4780 15 6 0.9052 2.4018 3.4964 16 6 1.1389 2.0522 4.8139 17 6 1.6772 0.8163 5.1205 18 6 1.9837 -0.0776 4.1060 19 7 2.5289 -1.3312 4.4147 20 6 2.1704 -1.9606 5.5513 21 8 1.3013 -1.4919 6.2559 22 6 2.8492 -3.2466 5.9468 23 7 2.2838 -3.7292 7.2138 24 6 0.8744 -4.1139 7.0493 25 6 0.3095 -4.5529 8.4028 26 8 1.1053 -5.6217 8.9219 27 6 2.4836 -5.2816 9.0954 28 6 3.0705 -4.8499 7.7489 29 1 3.0338 -5.6863 7.0510 30 6 4.5226 -4.4083 7.9426 31 1 -0.3633 -1.0206 -0.1206 32 1 -0.3634 0.4057 0.9442 33 1 -0.3633 0.6147 -0.8235 34 1 0.8925 1.2811 -3.4822 35 1 1.0327 1.7976 1.4500 36 1 0.4848 3.3688 3.2624 37 1 0.9005 2.7469 5.6056 38 1 1.8587 0.5469 6.1506 39 1 3.1643 -1.7459 3.8104 40 1 2.6906 -3.9949 5.1702 41 1 3.9179 -3.0707 6.0691 42 1 0.3058 -3.2619 6.6766 43 1 0.8025 -4.9381 6.3396 44 1 0.3319 -3.7124 9.0965 45 1 -0.7182 -4.8930 8.2752 46 1 2.5692 -4.4622 9.8092 47 1 3.0282 -6.1485 9.4695 48 1 4.5581 -3.5732 8.6422 49 1 5.1054 -5.2397 8.3389 50 1 4.9387 -4.0975 6.9843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108348651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = -43.620088 kcal Electronic energy + Delta-G solvation = -30502.888641 eV Core-core repulsion = 26428.502369 eV Total energy + Delta-G solvation = -4074.386272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 8.93 seconds Orbital eigenvalues (eV) -40.70260 -39.68499 -38.13557 -36.06546 -34.72970 -34.10979 -32.84125 -31.16807 -30.39672 -30.00816 -28.81058 -27.42860 -25.43032 -25.28848 -23.02877 -22.76696 -22.37405 -21.30842 -20.44826 -20.14021 -18.06760 -17.34370 -16.89519 -16.47212 -16.36965 -16.17797 -15.92003 -15.38495 -15.21075 -15.01290 -14.87563 -14.45375 -14.21376 -14.02718 -13.71308 -13.52783 -13.41402 -13.10268 -12.89008 -12.55195 -12.52689 -12.31647 -12.01351 -11.99031 -11.75833 -11.57288 -11.41486 -11.30651 -11.16912 -11.08480 -10.79400 -10.67806 -10.57719 -10.29177 -10.06917 -9.98331 -9.61543 -9.48966 -9.17577 -8.93959 -8.67746 -8.61706 -8.03542 -6.61759 -6.29351 -4.37044 1.49120 1.67987 2.37948 2.61588 2.88221 3.17219 3.24616 3.28649 3.51175 3.57891 3.64963 4.07872 4.24286 4.36764 4.50940 4.60846 4.77795 4.85517 4.93350 5.02489 5.03207 5.04464 5.16261 5.25742 5.27353 5.32514 5.35170 5.44046 5.53858 5.57268 5.64622 5.69172 5.80782 5.81889 5.84505 6.19339 6.43099 6.50728 6.52404 6.56536 6.64046 6.67852 6.69751 6.73644 6.84458 6.87995 7.23351 7.27855 7.46302 7.52682 7.67608 7.91433 8.14641 8.61753 9.27160 10.78135 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.002322 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.263702 B =12054.706764 C =13341.414489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.100 3.900 3 H 0.054 0.946 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.072 3.928 7 N -0.884 5.884 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.271 1.271 12 S -0.175 6.175 13 C -0.087 4.087 14 C -0.117 4.117 15 C -0.116 4.116 16 C -0.124 4.124 17 C -0.107 4.107 18 C 0.148 3.852 19 N -0.663 5.663 20 C 0.515 3.485 21 O -0.508 6.508 22 C 0.031 3.969 23 N -0.513 5.513 24 C 0.011 3.989 25 C 0.067 3.933 26 O -0.388 6.388 27 C 0.071 3.929 28 C 0.043 3.957 29 H 0.052 0.948 30 C -0.149 4.149 31 H 0.041 0.959 32 H 0.020 0.980 33 H 0.086 0.914 34 H 0.266 0.734 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.412 0.588 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -6.796 19.798 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 H 0.072 0.928 4 C -0.552 4.552 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.195 1.195 12 S 0.073 5.927 13 C -0.203 4.203 14 C -0.141 4.141 15 C -0.136 4.136 16 C -0.146 4.146 17 C -0.128 4.128 18 C 0.048 3.952 19 N -0.309 5.309 20 C 0.302 3.698 21 O -0.382 6.382 22 C -0.100 4.100 23 N -0.239 5.239 24 C -0.117 4.117 25 C -0.010 4.010 26 O -0.307 6.307 27 C -0.006 4.006 28 C -0.065 4.065 29 H 0.070 0.930 30 C -0.207 4.207 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.249 0.751 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.079 0.921 47 H 0.115 0.885 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.837 -7.348 20.531 22.141 hybrid contribution 0.118 0.335 -2.080 2.110 sum 3.954 -7.014 18.451 20.132 Atomic orbital electron populations 1.22093 0.96309 1.01440 0.99833 1.21101 0.95474 0.97467 0.88652 0.92764 1.20601 1.37063 1.08776 0.88787 0.91521 1.24889 0.94585 0.94977 0.98839 1.69896 1.36683 1.21206 1.24355 0.86354 0.79578 0.79057 0.81793 1.20442 1.20848 1.19534 1.85025 1.76145 1.29713 1.01809 1.21829 1.03514 0.99225 0.95701 1.21315 0.99703 0.92514 1.00599 1.21036 1.00603 0.99392 0.92599 1.20903 1.01118 0.96272 0.96306 1.20917 1.00640 0.92667 0.98599 1.17132 1.01063 0.85451 0.91567 1.43488 1.45591 1.18557 1.23300 1.20524 0.82897 0.85916 0.80466 1.90671 1.29928 1.66284 1.51363 1.22056 1.00864 0.94762 0.92288 1.61910 1.02323 1.33940 1.25737 1.23006 0.89386 1.01247 0.98024 1.22655 0.94585 0.90142 0.93612 1.87973 1.19508 1.38141 1.85043 1.22682 0.82175 1.00803 0.94951 1.22368 0.94369 0.92221 0.97591 0.92999 1.21878 0.93839 1.02220 1.02739 0.93933 0.96105 0.89558 0.92376 0.84458 0.86154 0.86204 0.85066 0.75146 0.91319 0.86880 0.87428 0.94256 0.91983 0.88390 0.92136 0.88485 0.91293 0.91589 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.44 37.16 0.31 -2.84 16 2 C 0.10 2.38 1.91 -27.88 -0.05 2.33 16 3 H 0.05 1.38 6.82 -51.92 -0.35 1.02 16 4 C -0.51 -13.33 8.50 -34.44 -0.29 -13.62 16 5 H 0.07 1.74 7.72 -52.49 -0.41 1.34 16 6 C 0.07 1.87 5.36 -17.82 -0.10 1.77 16 7 N -0.88 -23.63 11.64 55.43 0.65 -22.98 16 8 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 S -0.17 -3.55 20.08 -107.50 -2.16 -5.71 16 13 C -0.09 -1.63 6.00 -38.90 -0.23 -1.86 16 14 C -0.12 -2.12 8.09 -39.39 -0.32 -2.44 16 15 C -0.12 -1.79 10.04 -39.57 -0.40 -2.19 16 16 C -0.12 -1.82 10.04 -39.55 -0.40 -2.21 16 17 C -0.11 -1.69 8.65 -39.43 -0.34 -2.03 16 18 C 0.15 2.48 6.29 -83.43 -0.52 1.96 16 19 N -0.66 -9.38 5.04 -9.71 -0.05 -9.43 16 20 C 0.52 6.89 7.27 -10.99 -0.08 6.81 16 21 O -0.51 -8.18 12.04 5.54 0.07 -8.11 16 22 C 0.03 0.31 5.23 -4.98 -0.03 0.28 16 23 N -0.51 -5.35 4.28 -227.76 -0.97 -6.32 16 24 C 0.01 0.12 5.29 -3.71 -0.02 0.10 16 25 C 0.07 0.67 7.01 37.21 0.26 0.93 16 26 O -0.39 -4.16 10.83 -35.23 -0.38 -4.54 16 27 C 0.07 0.59 6.29 37.21 0.23 0.83 16 28 C 0.04 0.36 2.59 -67.60 -0.17 0.18 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 C -0.15 -0.95 8.92 37.16 0.33 -0.62 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.43 6.22 -51.93 -0.32 0.11 16 33 H 0.09 2.13 6.53 -51.93 -0.34 1.79 16 34 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.14 2.68 4.96 -52.49 -0.26 2.42 16 36 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 37 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.13 2.04 6.43 -52.48 -0.34 1.70 16 39 H 0.41 5.24 7.93 -40.82 -0.32 4.92 16 40 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 41 H 0.11 0.89 5.77 -51.93 -0.30 0.59 16 42 H 0.11 1.41 5.85 -51.93 -0.30 1.10 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.38 6.17 -51.93 -0.32 0.06 16 LS Contribution 400.91 15.07 6.04 6.04 Total: -1.00 -29.33 400.91 -11.12 -40.45 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.47 Total: 8.03 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.81 Total: -12.62 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.38 Total: -38.73 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.31 Total: -12.65 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.16 Total: -5.71 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.33 -11.12 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108348651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.172 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.93 seconds