Wall clock time and date at job start Tue Mar 31 2020 07:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.36379 * 2 1 4 4 C 1.54588 * 110.40357 * 122.32849 * 2 1 3 5 5 H 1.09002 * 110.39903 * 359.97438 * 4 2 1 6 6 O 1.42898 * 110.40033 * 237.58315 * 4 2 1 7 7 C 1.55929 * 104.64390 * 118.78570 * 4 2 1 8 8 Br 1.96597 * 115.91640 * 160.03233 * 7 4 2 9 9 C 1.55924 * 104.50037 * 288.91635 * 7 4 2 10 10 C 1.57029 * 103.68392 * 70.87388 * 9 7 4 11 11 C 1.55923 * 104.77669 * 359.50431 * 10 9 7 12 12 C 1.50702 * 116.52811 * 160.80752 * 11 10 9 13 13 H 1.08001 * 120.00240 * 123.62589 * 12 11 10 14 14 C 1.37878 * 119.99771 * 303.61747 * 12 11 10 15 15 N 1.31515 * 119.99700 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99865 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47273 * 60.00231 * 16 14 12 18 18 H 1.48505 * 109.47132 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47275 * 300.00284 * 16 14 12 20 20 C 1.56948 * 100.64800 * 33.78186 * 7 4 2 21 21 H 1.09009 * 112.02521 * 189.69243 * 20 7 4 22 22 Br 1.96607 * 112.02792 * 63.24920 * 20 7 4 23 23 H 1.09003 * 109.46735 * 68.72609 * 1 2 3 24 24 H 1.08997 * 109.47029 * 308.73049 * 1 2 3 25 25 H 1.08996 * 109.47451 * 188.72854 * 1 2 3 26 26 H 1.09006 * 109.46874 * 39.90478 * 3 2 1 27 27 H 1.08994 * 109.47624 * 159.90659 * 3 2 1 28 28 H 1.09003 * 109.47242 * 279.90641 * 3 2 1 29 29 H 0.96701 * 113.99559 * 179.97438 * 6 4 2 30 30 H 1.08992 * 110.40014 * 189.07008 * 9 7 4 31 31 H 1.09006 * 110.40151 * 311.48851 * 9 7 4 32 32 H 1.09006 * 109.98871 * 240.84501 * 10 9 7 33 33 H 1.09002 * 110.68641 * 118.51441 * 10 9 7 34 34 H 0.97005 * 119.99456 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0624 1.4343 0.0000 4 6 2.0689 -0.7748 1.2243 5 1 1.2438 -1.1554 1.8264 6 8 2.9155 0.0648 2.0119 7 6 2.8872 -1.9542 0.6154 8 35 4.2051 -2.7923 1.8095 9 6 1.8098 -2.9071 0.0134 10 6 1.2723 -2.1192 -1.2340 11 6 2.0736 -0.7816 -1.2350 12 6 2.1084 -0.0187 -2.5342 13 1 1.7689 1.0060 -2.5680 14 6 2.5737 -0.6289 -3.6796 15 7 2.9868 -1.8768 -3.6385 16 14 2.6175 0.3169 -5.2899 17 1 3.4888 1.5099 -5.1397 18 1 3.1553 -0.5575 -6.3630 19 1 1.2426 0.7498 -5.6472 20 6 3.4578 -1.2737 -0.6786 21 1 3.9329 -1.9946 -1.3441 22 35 4.6570 0.2258 -0.2557 23 1 -0.3633 0.3729 -0.9577 24 1 -0.3633 0.6430 0.8017 25 1 -0.3634 -1.0157 0.1559 26 1 1.4497 2.0493 0.6593 27 1 3.0935 1.4392 0.3530 28 1 2.0231 1.8365 -1.0124 29 1 3.2821 -0.3695 2.7943 30 1 2.2655 -3.8466 -0.2991 31 1 1.0172 -3.0910 0.7388 32 1 0.2061 -1.9234 -1.1199 33 1 1.4613 -2.6760 -2.1518 34 1 3.3139 -2.3062 -4.4445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109275461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:10 Heat of formation + Delta-G solvation = -24.874117 kcal Electronic energy + Delta-G solvation = -19450.880023 eV Core-core repulsion = 16476.871196 eV Total energy + Delta-G solvation = -2974.008827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 365.957 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.23908 -35.37622 -32.84638 -32.57057 -30.01488 -29.68530 -27.69857 -27.04177 -25.94761 -24.31050 -23.54348 -20.11840 -19.07056 -17.82098 -16.52860 -15.84395 -15.30609 -14.56536 -14.43729 -13.76770 -13.18834 -12.76795 -12.11993 -12.01841 -11.79218 -11.59103 -11.43014 -11.08839 -10.97553 -10.88258 -10.63398 -10.44878 -10.41096 -10.03832 -10.02242 -9.87763 -9.78598 -9.45311 -9.29383 -9.04396 -8.82061 -8.58590 -8.23391 -7.67539 -6.18856 -4.23440 2.04907 2.93617 3.26361 3.31207 3.35004 4.30176 4.63745 4.79930 5.03785 5.09584 5.36669 5.61773 5.72100 5.86972 5.94806 6.01918 6.16456 6.25033 6.31830 6.37184 6.50199 6.64417 6.73569 6.87555 6.98943 7.03393 7.08483 7.22152 7.54506 7.58811 7.86633 8.12753 8.23459 8.77940 9.42388 10.87185 Molecular weight = 365.96amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.006934 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.478787 B = 4037.271464 C = 4114.230170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 C -0.154 4.154 4 C 0.123 3.877 5 H 0.054 0.946 6 O -0.534 6.534 7 C -0.069 4.069 8 Br -0.149 7.149 9 C -0.106 4.106 10 C -0.128 4.128 11 C 0.119 3.881 12 C -0.483 4.483 13 H 0.071 0.929 14 C 0.074 3.926 15 N -0.882 5.882 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.014 4.014 21 H 0.122 0.878 22 Br -0.156 7.156 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.360 0.640 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -1.453 9.245 9.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.057 4.057 3 C -0.211 4.211 4 C 0.062 3.938 5 H 0.072 0.928 6 O -0.339 6.339 7 C -0.147 4.147 8 Br -0.066 7.066 9 C -0.146 4.146 10 C -0.167 4.167 11 C 0.117 3.883 12 C -0.520 4.520 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.519 5.519 16 Si 0.721 3.279 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.112 4.112 21 H 0.140 0.860 22 Br -0.073 7.073 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.206 0.794 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.418 -0.955 9.226 9.285 hybrid contribution -0.257 -0.473 -0.619 0.821 sum 0.161 -1.428 8.607 8.726 Atomic orbital electron populations 1.21917 0.95074 1.00459 1.01519 1.21742 0.94318 0.96944 0.92720 1.22405 1.04194 0.93196 1.01307 1.23186 0.89845 0.88024 0.92727 0.92806 1.86749 1.66608 1.40311 1.40182 1.27647 0.94036 0.97616 0.95438 1.97212 1.60403 1.82751 1.66271 1.23170 0.95398 0.97619 0.98390 1.23400 0.98506 0.98222 0.96563 1.20338 0.86112 0.90549 0.91349 1.20457 1.42645 0.98381 0.90519 0.91144 1.24920 0.94349 0.94764 0.98932 1.69825 1.41726 1.11282 1.29093 0.86619 0.78539 0.80031 0.82750 1.19915 1.21309 1.20170 1.27227 0.98256 0.92227 0.93475 0.85969 1.96958 1.65411 1.50359 1.94611 0.91541 0.94174 0.92963 0.95901 0.88222 0.91877 0.79382 0.91453 0.92023 0.92397 0.88416 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.42 37.16 0.28 -1.97 16 2 C -0.06 -1.06 0.55 -152.11 -0.08 -1.15 16 3 C -0.15 -3.03 7.32 37.16 0.27 -2.76 16 4 C 0.12 2.13 3.00 -24.33 -0.07 2.06 16 5 H 0.05 0.87 7.38 -51.93 -0.38 0.49 16 6 O -0.53 -9.10 9.45 -35.23 -0.33 -9.43 16 7 C -0.07 -1.24 1.42 -85.35 -0.12 -1.36 16 8 Br -0.15 -2.39 32.73 -68.01 -2.23 -4.62 16 9 C -0.11 -1.86 6.15 -22.98 -0.14 -2.00 16 10 C -0.13 -2.54 5.41 -22.99 -0.12 -2.67 16 11 C 0.12 2.50 0.32 -150.31 -0.05 2.45 16 12 C -0.48 -11.51 8.00 -34.44 -0.28 -11.79 16 13 H 0.07 1.71 6.15 -52.49 -0.32 1.39 16 14 C 0.07 1.81 5.35 -17.82 -0.10 1.71 16 15 N -0.88 -22.05 10.42 55.43 0.58 -21.48 16 16 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C -0.01 -0.30 3.03 -22.38 -0.07 -0.37 16 21 H 0.12 2.92 7.21 -51.92 -0.37 2.55 16 22 Br -0.16 -3.19 27.16 -68.01 -1.85 -5.04 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.04 0.62 7.99 -51.93 -0.42 0.20 16 25 H 0.05 0.82 6.19 -51.93 -0.32 0.50 16 26 H 0.02 0.41 7.90 -51.93 -0.41 0.00 16 27 H 0.10 2.02 3.40 -51.93 -0.18 1.85 16 28 H 0.06 1.33 5.78 -51.93 -0.30 1.03 16 29 H 0.36 5.24 8.13 45.56 0.37 5.61 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.95 7.82 -51.93 -0.41 0.54 16 32 H 0.06 1.08 5.44 -51.93 -0.28 0.80 16 33 H 0.10 2.21 6.39 -51.93 -0.33 1.87 16 34 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -23.94 282.98 -8.40 -32.34 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.33 Total: 7.02 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -0.48 Total: -17.84 kcal Atomic # 7 Polarization: -22.05 SS G_CDS: 0.58 Total: -21.48 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.33 Total: -9.43 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 35 Polarization: -5.58 SS G_CDS: -4.07 Total: -9.66 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -23.94 -8.40 -32.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109275461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.469 kcal (2) G-P(sol) polarization free energy of solvation -23.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds