Wall clock time and date at job start Tue Mar 31 2020 07:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.36379 * 2 1 4 4 C 1.54588 * 110.40357 * 122.32849 * 2 1 3 5 5 H 1.09002 * 110.39903 * 359.97438 * 4 2 1 6 6 O 1.42898 * 110.40033 * 237.58315 * 4 2 1 7 7 C 1.55929 * 104.64390 * 118.78570 * 4 2 1 8 8 Br 1.96597 * 115.91640 * 160.03233 * 7 4 2 9 9 C 1.55924 * 104.50037 * 288.91635 * 7 4 2 10 10 C 1.57029 * 103.68392 * 70.87388 * 9 7 4 11 11 C 1.55923 * 104.77669 * 359.50431 * 10 9 7 12 12 C 1.50702 * 116.52811 * 160.80752 * 11 10 9 13 13 H 1.08001 * 120.00240 * 123.62589 * 12 11 10 14 14 C 1.37878 * 119.99771 * 303.61747 * 12 11 10 15 15 N 1.31515 * 119.99700 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99865 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47273 * 60.00231 * 16 14 12 18 18 H 1.48505 * 109.47132 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47275 * 300.00284 * 16 14 12 20 20 C 1.56948 * 100.64800 * 33.78186 * 7 4 2 21 21 H 1.09009 * 112.02521 * 189.69243 * 20 7 4 22 22 Br 1.96607 * 112.02792 * 63.24920 * 20 7 4 23 23 H 1.09003 * 109.46735 * 68.72609 * 1 2 3 24 24 H 1.08997 * 109.47029 * 308.73049 * 1 2 3 25 25 H 1.08996 * 109.47451 * 188.72854 * 1 2 3 26 26 H 1.09006 * 109.46874 * 39.90478 * 3 2 1 27 27 H 1.08994 * 109.47624 * 159.90659 * 3 2 1 28 28 H 1.09003 * 109.47242 * 279.90641 * 3 2 1 29 29 H 0.96701 * 113.99559 * 179.97438 * 6 4 2 30 30 H 1.08992 * 110.40014 * 189.07008 * 9 7 4 31 31 H 1.09006 * 110.40151 * 311.48851 * 9 7 4 32 32 H 1.09006 * 109.98871 * 240.84501 * 10 9 7 33 33 H 1.09002 * 110.68641 * 118.51441 * 10 9 7 34 34 H 0.97005 * 119.99456 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0624 1.4343 0.0000 4 6 2.0689 -0.7748 1.2243 5 1 1.2438 -1.1554 1.8264 6 8 2.9155 0.0648 2.0119 7 6 2.8872 -1.9542 0.6154 8 35 4.2051 -2.7923 1.8095 9 6 1.8098 -2.9071 0.0134 10 6 1.2723 -2.1192 -1.2340 11 6 2.0736 -0.7816 -1.2350 12 6 2.1084 -0.0187 -2.5342 13 1 1.7689 1.0060 -2.5680 14 6 2.5737 -0.6289 -3.6796 15 7 2.9868 -1.8768 -3.6385 16 14 2.6175 0.3169 -5.2899 17 1 3.4888 1.5099 -5.1397 18 1 3.1553 -0.5575 -6.3630 19 1 1.2426 0.7498 -5.6472 20 6 3.4578 -1.2737 -0.6786 21 1 3.9329 -1.9946 -1.3441 22 35 4.6570 0.2258 -0.2557 23 1 -0.3633 0.3729 -0.9577 24 1 -0.3633 0.6430 0.8017 25 1 -0.3634 -1.0157 0.1559 26 1 1.4497 2.0493 0.6593 27 1 3.0935 1.4392 0.3530 28 1 2.0231 1.8365 -1.0124 29 1 3.2821 -0.3695 2.7943 30 1 2.2655 -3.8466 -0.2991 31 1 1.0172 -3.0910 0.7388 32 1 0.2061 -1.9234 -1.1199 33 1 1.4613 -2.6760 -2.1518 34 1 3.3139 -2.3062 -4.4445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109275461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:09 Heat of formation + Delta-G solvation = -37.054205 kcal Electronic energy + Delta-G solvation = -19451.408191 eV Core-core repulsion = 16476.871196 eV Total energy + Delta-G solvation = -2974.536995 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 365.957 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72530 -36.76726 -34.49863 -34.17012 -31.56846 -31.14543 -29.30302 -28.54257 -27.44126 -26.03213 -25.01478 -21.65755 -20.56852 -19.43074 -17.90646 -17.48431 -16.91315 -16.18680 -16.04017 -15.19434 -14.77018 -14.20883 -13.71550 -13.57850 -13.31568 -13.08411 -12.96584 -12.79101 -12.61706 -12.44505 -12.18377 -12.01538 -11.92540 -11.67124 -11.55020 -11.38634 -11.19321 -10.93338 -10.74375 -10.60973 -10.44058 -10.31433 -9.80415 -9.28860 -8.04794 -6.11808 0.64538 1.31225 1.45948 1.49230 1.53251 2.47524 3.15656 3.26590 3.40479 3.70003 3.87275 4.18246 4.31260 4.47910 4.53202 4.59913 4.68787 4.75542 4.86847 4.94877 5.06402 5.18634 5.23590 5.35250 5.42032 5.52728 5.54548 5.64697 5.82216 5.98991 6.14111 6.46274 6.90968 6.93560 7.54731 8.98804 Molecular weight = 365.96amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.006934 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.478787 B = 4037.271464 C = 4114.230170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.150 4.150 4 C 0.130 3.870 5 H 0.080 0.920 6 O -0.542 6.542 7 C -0.065 4.065 8 Br -0.127 7.127 9 C -0.098 4.098 10 C -0.125 4.125 11 C 0.104 3.896 12 C -0.487 4.487 13 H 0.059 0.941 14 C 0.038 3.962 15 N -0.899 5.899 16 Si 0.932 3.068 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.272 1.272 20 C -0.016 4.016 21 H 0.087 0.913 22 Br -0.157 7.157 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.372 0.628 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -1.674 11.115 11.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.207 4.207 4 C 0.069 3.931 5 H 0.098 0.902 6 O -0.348 6.348 7 C -0.143 4.143 8 Br -0.044 7.044 9 C -0.137 4.137 10 C -0.164 4.164 11 C 0.102 3.898 12 C -0.524 4.524 13 H 0.077 0.923 14 C -0.163 4.163 15 N -0.536 5.536 16 Si 0.760 3.240 17 H -0.206 1.206 18 H -0.216 1.216 19 H -0.197 1.197 20 C -0.114 4.114 21 H 0.106 0.894 22 Br -0.075 7.075 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.221 0.779 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.414 -1.174 11.105 11.174 hybrid contribution 0.063 -0.375 -1.182 1.242 sum -0.352 -1.550 9.923 10.049 Atomic orbital electron populations 1.21877 0.93467 1.01776 1.01517 1.21712 0.95662 0.96098 0.92443 1.22321 1.04194 0.94116 1.00114 1.23108 0.90344 0.87264 0.92348 0.90246 1.86719 1.66727 1.40576 1.40789 1.27552 0.94061 0.98044 0.94680 1.97225 1.59843 1.82319 1.65022 1.23123 0.96011 0.96776 0.97839 1.23259 0.99157 0.97458 0.96550 1.20322 0.86767 0.91413 0.91271 1.20658 1.41722 0.98076 0.91991 0.92265 1.25374 0.94820 0.95320 1.00770 1.69931 1.42789 1.11933 1.28991 0.86007 0.78353 0.78839 0.80816 1.20641 1.21590 1.19743 1.27015 0.97674 0.91697 0.94968 0.89440 1.96945 1.65673 1.50440 1.94473 0.92915 0.92354 0.91455 0.94736 0.88846 0.94057 0.77943 0.91895 0.88904 0.91129 0.91564 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 7.42 71.98 0.53 -3.49 16 2 C -0.06 -2.09 0.55 -50.63 -0.03 -2.12 16 3 C -0.15 -5.72 7.32 71.98 0.53 -5.20 16 4 C 0.13 4.10 3.00 32.15 0.10 4.20 16 5 H 0.08 2.17 7.38 -2.39 -0.02 2.15 16 6 O -0.54 -16.85 9.45 -148.98 -1.41 -18.26 16 7 C -0.07 -2.17 1.42 -7.38 -0.01 -2.18 16 8 Br -0.13 -3.77 32.73 -20.37 -0.67 -4.44 16 9 C -0.10 -3.19 6.15 33.02 0.20 -2.99 16 10 C -0.12 -4.85 5.41 33.02 0.18 -4.67 16 11 C 0.10 4.34 0.32 -49.46 -0.02 4.32 16 12 C -0.49 -23.45 8.00 25.60 0.20 -23.24 16 13 H 0.06 2.93 6.15 -2.91 -0.02 2.91 16 14 C 0.04 1.89 5.35 84.65 0.45 2.35 16 15 N -0.90 -45.93 10.42 21.45 0.22 -45.70 16 16 Si 0.93 41.21 29.54 68.60 2.03 43.23 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 C -0.02 -0.66 3.03 33.41 0.10 -0.56 16 21 H 0.09 4.24 7.21 -2.38 -0.02 4.22 16 22 Br -0.16 -6.36 27.16 -20.37 -0.55 -6.92 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.60 7.99 -2.39 -0.02 1.58 16 25 H 0.07 1.87 6.19 -2.39 -0.01 1.86 16 26 H 0.03 1.19 7.90 -2.38 -0.02 1.17 16 27 H 0.09 3.68 3.40 -2.39 -0.01 3.67 16 28 H 0.04 1.72 5.78 -2.39 -0.01 1.71 16 29 H 0.37 9.58 8.13 -74.06 -0.60 8.98 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.47 7.82 -2.38 -0.02 2.45 16 32 H 0.07 2.50 5.44 -2.38 -0.01 2.49 16 33 H 0.07 3.01 6.39 -2.39 -0.02 2.99 16 34 H 0.26 13.07 8.31 -92.70 -0.77 12.30 16 Total: -1.00 -50.82 282.98 2.40 -48.42 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.54 Total: 17.26 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 2.24 Total: -33.59 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.22 Total: -45.70 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.41 Total: -18.26 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 35 Polarization: -10.13 SS G_CDS: -1.22 Total: -11.35 kcal Total: -50.82 2.40 -48.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109275461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.361 kcal (2) G-P(sol) polarization free energy of solvation -50.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds