Wall clock time and date at job start Tue Mar 31 2020 07:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30616 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48502 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47370 * 300.00266 * 3 2 1 6 6 H 1.48504 * 109.46874 * 60.00214 * 3 2 1 7 7 C 1.40153 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.41240 * 120.00385 * 0.02562 * 7 2 1 10 10 O 1.21854 * 119.99511 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00262 * 180.02562 * 9 7 2 12 12 C 1.37916 * 119.99891 * 179.97438 * 11 9 7 13 13 N 1.30347 * 125.44014 * 180.27844 * 12 11 9 14 14 C 1.31250 * 117.06780 * 180.18254 * 13 12 11 15 15 C 1.50700 * 122.12587 * 179.78910 * 14 13 12 16 16 C 1.50694 * 109.47433 * 304.71307 * 15 14 13 17 17 C 1.38241 * 120.00559 * 99.99718 * 16 15 14 18 18 C 1.38219 * 120.00799 * 179.97438 * 17 16 15 19 19 C 1.38265 * 120.02098 * 0.02562 * 18 17 16 20 20 C 1.38195 * 120.01148 * 359.97438 * 19 18 17 21 21 C 1.38308 * 120.00452 * 280.25545 * 16 15 14 22 22 Br 1.89098 * 120.01010 * 359.97438 * 21 16 15 23 23 C 1.34213 * 115.74425 * 359.52012 * 14 13 12 24 24 S 1.76172 * 125.43826 * 359.96914 * 12 11 9 25 25 H 0.97003 * 120.00868 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99820 * 359.97438 * 11 9 7 27 27 H 1.09002 * 109.46488 * 184.71142 * 15 14 13 28 28 H 1.09000 * 109.46592 * 64.71326 * 15 14 13 29 29 H 1.08001 * 119.99359 * 0.02562 * 17 16 15 30 30 H 1.07998 * 119.98901 * 180.02562 * 18 17 16 31 31 H 1.08008 * 119.99076 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.00237 * 179.97438 * 20 19 18 33 33 H 1.07998 * 125.90027 * 180.22787 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.7001 1.3465 -0.0006 5 1 1.8813 2.3966 -1.2125 6 1 1.8813 2.3964 1.2126 7 6 2.0070 -1.2137 -0.0005 8 1 3.0870 -1.2137 -0.0010 9 6 1.3009 -2.4370 -0.0016 10 8 0.0824 -2.4370 -0.0016 11 7 1.9748 -3.6041 -0.0016 12 6 1.2853 -4.7985 -0.0022 13 7 1.8271 -5.9840 0.0029 14 6 1.0124 -7.0131 -0.0023 15 6 1.5156 -8.4336 -0.0019 16 6 2.4513 -8.6354 -1.1658 17 6 3.8190 -8.6033 -0.9669 18 6 4.6773 -8.7889 -2.0342 19 6 4.1685 -9.0062 -3.3014 20 6 2.8015 -9.0385 -3.5012 21 6 1.9420 -8.8474 -2.4341 22 35 0.0713 -8.8849 -2.7079 23 6 -0.2972 -6.7197 -0.0022 24 16 -0.4685 -4.9656 -0.0021 25 1 -0.4851 0.8400 0.0004 26 1 2.9448 -3.6040 -0.0013 27 1 0.6718 -9.1178 -0.0912 28 1 2.0464 -8.6307 0.9295 29 1 4.2168 -8.4339 0.0228 30 1 5.7457 -8.7641 -1.8784 31 1 4.8397 -9.1516 -4.1350 32 1 2.4042 -9.2078 -4.4911 33 1 -1.1064 -7.4350 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122128203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:48 Heat of formation + Delta-G solvation = 30.785931 kcal Electronic energy + Delta-G solvation = -21163.134544 eV Core-core repulsion = 17747.612381 eV Total energy + Delta-G solvation = -3415.522163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 365.978 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -39.70235 -38.78862 -37.75675 -34.07444 -33.00674 -32.48589 -32.00367 -29.59430 -29.00375 -27.13967 -26.39352 -23.42664 -22.46802 -21.57937 -20.43071 -19.44746 -17.36218 -16.93012 -16.55968 -15.84842 -15.64858 -15.39023 -14.99322 -14.37004 -14.26153 -14.00357 -13.50370 -13.31037 -13.03040 -12.72898 -12.50010 -12.17673 -12.02866 -11.54333 -11.40837 -11.22574 -11.14157 -10.89190 -10.80437 -10.54255 -10.34163 -10.06835 -9.65965 -9.13329 -8.87034 -8.86299 -8.62457 -8.26738 -8.03916 -7.09806 -6.60655 -5.14520 1.10494 1.27762 1.68539 1.75138 2.12161 2.87280 2.94179 3.03887 3.08766 3.47769 3.65276 3.79740 4.17420 4.22585 4.74896 4.76660 4.94477 5.16514 5.30226 5.36487 5.44763 5.55223 5.60913 5.82417 5.89010 5.98975 6.17772 6.26033 6.36519 6.50068 6.71586 6.83775 7.04260 7.50605 7.59446 7.78791 8.50725 8.58226 8.99271 10.05756 10.27830 Molecular weight = 365.98amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.003037 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.616853 B = 9217.327026 C =10011.147335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.086 3.914 3 Si 0.919 3.081 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.077 0.923 9 C 0.530 3.470 10 O -0.547 6.547 11 N -0.636 5.636 12 C 0.319 3.681 13 N -0.549 5.549 14 C 0.100 3.900 15 C -0.011 4.011 16 C -0.033 4.033 17 C -0.096 4.096 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.095 4.095 21 C -0.086 4.086 22 Br -0.049 7.049 23 C -0.345 4.345 24 S 0.182 5.818 25 H 0.277 0.723 26 H 0.405 0.595 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.772 -17.361 -4.243 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.096 0.904 9 C 0.340 3.660 10 O -0.431 6.431 11 N -0.284 5.284 12 C -0.050 4.050 13 N -0.275 5.275 14 C -0.034 4.034 15 C -0.051 4.051 16 C -0.036 4.036 17 C -0.115 4.115 18 C -0.125 4.125 19 C -0.142 4.142 20 C -0.114 4.114 21 C -0.165 4.165 22 Br 0.037 6.963 23 C -0.486 4.486 24 S 0.431 5.569 25 H 0.088 0.912 26 H 0.242 0.758 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.739 -16.407 -4.337 17.190 hybrid contribution 1.729 0.003 -0.040 1.729 sum 4.467 -16.404 -4.377 17.555 Atomic orbital electron populations 1.69981 1.07394 1.28462 1.30519 1.25797 0.94759 1.00951 0.92322 0.86113 0.80538 0.80465 0.78646 1.18341 1.19705 1.19694 1.19898 0.94776 0.89276 1.51783 0.90440 1.17227 0.87777 0.81715 0.79245 1.90622 1.13208 1.83531 1.55774 1.43647 1.10278 1.01998 1.72475 1.24316 0.94144 0.89236 0.97293 1.66212 1.37442 0.96210 1.27615 1.19053 0.88623 0.93292 1.02411 1.19274 0.97927 0.91895 0.96026 1.19618 0.94565 0.96204 0.93166 1.21036 0.91877 0.98874 0.99694 1.21241 0.99953 0.98508 0.92765 1.21085 0.94553 1.01157 0.97453 1.21040 0.93224 0.99388 0.97796 1.21727 0.90628 1.08214 0.95941 1.96684 1.05287 1.97540 1.96837 1.27088 0.99791 1.02703 1.19064 1.86116 1.04002 0.95728 1.71018 0.91187 0.75850 0.89151 0.89600 0.85176 0.85638 0.85557 0.85397 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.07 11.72 55.56 0.65 -19.42 16 2 C 0.09 2.19 5.50 -17.35 -0.10 2.09 16 3 Si 0.92 18.33 29.56 -169.99 -5.02 13.31 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.52 -13.48 9.28 -37.72 -0.35 -13.83 16 8 H 0.08 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.53 14.10 7.51 -15.12 -0.11 13.99 16 10 O -0.55 -16.06 12.36 5.05 0.06 -16.00 16 11 N -0.64 -14.54 5.35 -14.63 -0.08 -14.62 16 12 C 0.32 7.08 8.37 -87.81 -0.74 6.34 16 13 N -0.55 -11.02 10.39 -10.10 -0.10 -11.12 16 14 C 0.10 1.76 5.64 -84.26 -0.48 1.29 16 15 C -0.01 -0.16 5.24 -29.04 -0.15 -0.31 16 16 C -0.03 -0.46 5.00 -104.60 -0.52 -0.98 16 17 C -0.10 -1.19 9.67 -39.59 -0.38 -1.58 16 18 C -0.11 -1.15 10.05 -39.58 -0.40 -1.55 16 19 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 20 C -0.09 -1.14 9.79 -39.56 -0.39 -1.52 16 21 C -0.09 -1.17 6.21 -39.52 -0.25 -1.42 16 22 Br -0.05 -0.66 31.34 -68.01 -2.13 -2.79 16 23 C -0.34 -6.11 10.70 29.31 0.31 -5.80 16 24 S 0.18 3.91 20.53 -107.50 -2.21 1.70 16 25 H 0.28 6.77 8.29 -40.82 -0.34 6.43 16 26 H 0.41 8.16 8.77 -40.82 -0.36 7.80 16 27 H 0.09 1.13 7.03 -51.93 -0.36 0.77 16 28 H 0.09 1.08 8.00 -51.93 -0.42 0.66 16 29 H 0.13 1.46 8.04 -52.49 -0.42 1.04 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -30.69 325.78 -10.66 -41.35 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -2.80 Total: 7.67 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.94 Total: -4.99 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.47 Total: -45.16 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.06 Total: -16.00 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -2.21 Total: 1.70 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.13 Total: -2.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.69 -10.66 -41.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122128203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.136 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds