Wall clock time and date at job start Tue Mar 31 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38264 * 119.98660 * 2 1 4 4 C 1.38184 * 120.01248 * 180.30077 * 3 2 1 5 5 C 1.38378 * 119.98469 * 359.46883 * 4 3 2 6 6 Cl 1.73602 * 120.01140 * 180.27689 * 5 4 3 7 7 C 1.38322 * 119.97384 * 0.26061 * 5 4 3 8 8 S 1.76207 * 120.00735 * 180.02562 * 7 5 4 9 9 O 1.42101 * 106.39945 * 49.97525 * 8 7 5 10 10 O 1.42096 * 106.40122 * 182.89548 * 8 7 5 11 11 N 1.65597 * 107.21674 * 296.43502 * 8 7 5 12 12 C 1.46503 * 120.00026 * 112.04970 * 11 8 7 13 13 C 1.50700 * 109.46760 * 97.19819 * 12 11 8 14 14 H 1.08000 * 120.00116 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00028 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00001 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00205 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46837 * 90.00221 * 17 15 13 19 19 H 1.48500 * 109.47170 * 210.00201 * 17 15 13 20 20 H 1.48495 * 109.47004 * 330.00301 * 17 15 13 21 21 C 1.39675 * 120.00072 * 292.05616 * 11 8 7 22 22 C 1.38914 * 120.06974 * 334.84258 * 21 11 8 23 23 C 1.38106 * 119.91972 * 179.77401 * 22 21 11 24 24 C 1.38283 * 120.07748 * 0.50655 * 23 22 21 25 25 C 1.38287 * 120.14934 * 359.74401 * 24 23 22 26 26 C 1.38100 * 120.07297 * 0.02562 * 25 24 23 27 27 C 1.38217 * 119.98439 * 179.75016 * 2 1 3 28 28 H 1.08999 * 109.47258 * 270.25250 * 1 2 3 29 29 H 1.09000 * 109.46835 * 30.24929 * 1 2 3 30 30 H 1.08995 * 109.47168 * 150.25193 * 1 2 3 31 31 H 1.08002 * 119.99302 * 0.04542 * 3 2 1 32 32 H 1.08003 * 120.01026 * 179.75014 * 4 3 2 33 33 H 1.09000 * 109.47193 * 217.19546 * 12 11 8 34 34 H 1.08999 * 109.47210 * 337.20145 * 12 11 8 35 35 H 0.97003 * 120.00252 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.03952 * 0.02562 * 22 21 11 37 37 H 1.07999 * 119.96362 * 180.25591 * 23 22 21 38 38 H 1.08001 * 119.92895 * 179.72431 * 24 23 22 39 39 H 1.07998 * 119.96069 * 179.97438 * 25 24 23 40 40 H 1.08007 * 120.03886 * 179.97438 * 26 25 24 41 41 H 1.07999 * 119.99360 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5799 1.1982 -0.0063 5 6 4.2721 0.0000 -0.0015 6 17 6.0081 0.0000 -0.0021 7 6 3.5802 -1.1978 0.0042 8 16 4.4607 -2.7241 0.0110 9 8 5.4208 -2.6287 1.0543 10 8 3.4819 -3.7522 -0.0529 11 7 5.3152 -2.8033 -1.4052 12 6 6.7785 -2.7346 -1.3826 13 6 7.3476 -4.1291 -1.4351 14 1 6.6855 -4.9811 -1.4812 15 6 8.7134 -4.3170 -1.4255 16 7 9.5196 -3.2794 -1.3699 17 14 9.4188 -6.0455 -1.4899 18 1 9.6239 -6.4440 -2.9056 19 1 10.7193 -6.0764 -0.7736 20 1 8.4741 -6.9902 -0.8416 21 6 4.6410 -2.9354 -2.6213 22 6 3.3765 -3.5094 -2.6573 23 6 2.7106 -3.6342 -3.8608 24 6 3.3056 -3.1983 -5.0304 25 6 4.5665 -2.6312 -4.9988 26 6 5.2359 -2.4990 -3.7982 27 6 2.1978 -1.1972 0.0052 28 1 -0.3634 0.0045 1.0276 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6578 2.1327 0.0007 32 1 4.1197 2.1337 -0.0104 33 1 7.1289 -2.1665 -2.2443 34 1 7.1051 -2.2432 -0.4661 35 1 10.4805 -3.4117 -1.3627 36 1 2.9129 -3.8538 -1.7447 37 1 1.7258 -4.0765 -3.8890 38 1 2.7846 -3.3011 -5.9709 39 1 5.0285 -2.2921 -5.9142 40 1 6.2209 -2.0564 -3.7742 41 1 1.6575 -2.1323 0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124522227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:11 Heat of formation + Delta-G solvation = -13.434892 kcal Electronic energy + Delta-G solvation = -29132.770821 eV Core-core repulsion = 25131.017791 eV Total energy + Delta-G solvation = -4001.753030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.064 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.59139 -39.04038 -37.05990 -36.45366 -35.52416 -35.36501 -32.84379 -32.59243 -31.52564 -30.47613 -29.21259 -27.13583 -26.74074 -23.60974 -23.25239 -22.24363 -22.03456 -21.08331 -18.79806 -17.95313 -17.28198 -16.66335 -16.58311 -16.12333 -15.95950 -15.32458 -14.63658 -14.55385 -14.31758 -14.25002 -13.97362 -13.80733 -13.60482 -13.22805 -13.06234 -12.82618 -12.70413 -12.38532 -12.37221 -12.04975 -11.72805 -11.63581 -11.55992 -11.38310 -11.24430 -11.16614 -11.03659 -10.85377 -10.68313 -10.52142 -10.38646 -10.09046 -9.91756 -9.57039 -9.13303 -8.74644 -8.48624 -8.47596 -7.44633 -6.11377 -4.16730 0.45279 0.74304 0.96724 1.85372 1.92158 2.01922 3.07387 3.30698 3.36575 3.38911 3.43552 3.99175 4.28041 4.37305 4.42627 4.51455 4.78008 4.88142 4.97197 5.15518 5.23812 5.30495 5.32457 5.36565 5.37625 5.53629 5.60580 5.67663 5.73660 5.80422 5.81539 5.91997 6.13671 6.14687 6.31199 6.50825 6.57027 6.75870 6.98411 7.02375 7.22285 7.25817 7.33898 7.71335 7.85037 8.09015 8.86020 9.48679 10.96812 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.004803 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.364623 B = 5828.439359 C = 6956.436281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.107 4.107 3 C -0.060 4.060 4 C -0.128 4.128 5 C 0.047 3.953 6 Cl -0.023 7.023 7 C -0.667 4.667 8 S 2.682 3.318 9 O -0.924 6.924 10 O -0.958 6.958 11 N -0.917 5.917 12 C 0.240 3.760 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.067 3.933 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.194 3.806 22 C -0.205 4.205 23 C -0.093 4.093 24 C -0.160 4.160 25 C -0.098 4.098 26 C -0.134 4.134 27 C -0.010 4.010 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.265 0.735 36 H 0.165 0.835 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.682 10.089 -1.423 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.078 4.078 4 C -0.148 4.148 5 C 0.019 3.981 6 Cl 0.007 6.993 7 C -0.751 4.751 8 S 2.772 3.228 9 O -0.914 6.914 10 O -0.948 6.948 11 N -0.743 5.743 12 C 0.120 3.880 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.096 3.904 22 C -0.226 4.226 23 C -0.112 4.112 24 C -0.179 4.179 25 C -0.117 4.117 26 C -0.156 4.156 27 C -0.030 4.030 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.181 0.819 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.260 9.578 -0.611 18.881 hybrid contribution 0.617 -0.195 -0.425 0.774 sum -15.643 9.383 -1.036 18.271 Atomic orbital electron populations 1.20818 0.90073 1.03425 1.02780 1.20101 0.96838 0.92924 1.00978 1.21264 0.93404 0.98136 0.95007 1.21166 0.94473 0.96925 1.02187 1.20640 0.86809 0.93938 0.96747 1.98517 1.06347 1.98529 1.95901 1.31208 1.06481 1.20188 1.17243 1.02569 0.72966 0.73825 0.73412 1.93634 1.59128 1.86141 1.52464 1.93389 1.62134 1.53311 1.85981 1.55475 1.18660 1.82068 1.18107 1.19607 0.69422 0.98794 1.00187 1.21437 0.91903 0.92230 1.52031 0.91826 1.24887 0.96657 0.97441 0.94603 1.69918 1.03753 1.29587 1.49682 0.86491 0.78538 0.84258 0.78224 1.20441 1.20951 1.19585 1.17625 0.91412 0.94994 0.86396 1.22242 0.95833 1.02817 1.01716 1.20832 0.99252 0.99058 0.92007 1.20973 0.96279 1.02870 0.97827 1.20927 0.94708 0.98875 0.97143 1.21074 1.01262 1.01934 0.91344 1.20858 0.91025 0.99343 0.91726 0.90741 0.91147 0.90842 0.84531 0.84064 0.93656 0.91756 0.92516 0.81861 0.86355 0.86848 0.86368 0.84925 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.11 -1.17 5.88 -104.62 -0.62 -1.78 16 3 C -0.06 -0.61 9.70 -39.59 -0.38 -0.99 16 4 C -0.13 -1.56 9.83 -39.55 -0.39 -1.95 16 5 C 0.05 0.74 6.30 -39.50 -0.25 0.49 16 6 Cl -0.02 -0.40 24.16 -51.86 -1.25 -1.66 16 7 C -0.67 -11.13 5.89 -39.55 -0.23 -11.36 16 8 S 2.68 55.30 4.65 -107.50 -0.50 54.80 16 9 O -0.92 -21.73 15.01 -57.17 -0.86 -22.58 16 10 O -0.96 -19.68 13.43 -57.17 -0.77 -20.44 16 11 N -0.92 -19.97 2.77 -59.81 -0.17 -20.13 16 12 C 0.24 6.02 4.12 -5.19 -0.02 6.00 16 13 C -0.54 -15.03 9.34 -34.44 -0.32 -15.35 16 14 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 16 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.19 3.85 6.22 -83.79 -0.52 3.33 16 22 C -0.20 -3.69 9.19 -39.38 -0.36 -4.05 16 23 C -0.09 -1.40 10.04 -39.61 -0.40 -1.80 16 24 C -0.16 -2.29 10.04 -39.55 -0.40 -2.69 16 25 C -0.10 -1.52 10.04 -39.61 -0.40 -1.92 16 26 C -0.13 -2.49 9.36 -39.38 -0.37 -2.86 16 27 C -0.01 -0.14 9.20 -39.59 -0.36 -0.51 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 33 H 0.05 1.14 6.10 -51.93 -0.32 0.82 16 34 H 0.06 1.70 5.48 -51.93 -0.28 1.42 16 35 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.16 2.98 4.63 -52.61 -0.24 2.74 16 37 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.13 2.55 6.22 -52.48 -0.33 2.23 16 41 H 0.15 1.85 7.34 -52.49 -0.39 1.47 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -32.49 365.27 -11.56 -44.05 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.48 Total: 2.70 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: -4.76 Total: -34.13 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.57 Total: -45.01 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.63 Total: -43.03 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 55.30 SS G_CDS: -0.50 Total: 54.80 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.25 Total: -1.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.49 -11.56 -44.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124522227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.618 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds