Wall clock time and date at job start Tue Mar 31 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.38054 * 126.34686 * 2 1 4 4 C 1.38837 * 134.14123 * 0.04642 * 3 2 1 5 5 C 1.37850 * 119.68698 * 179.97438 * 4 3 2 6 6 C 1.38776 * 120.45592 * 359.75784 * 5 4 3 7 7 C 1.36606 * 120.66551 * 0.50822 * 6 5 4 8 8 C 1.39746 * 119.88512 * 359.47204 * 7 6 5 9 9 N 1.35776 * 133.60044 * 180.25155 * 8 7 6 10 10 C 1.30115 * 109.64449 * 180.02562 * 9 8 7 11 11 C 1.50698 * 124.94995 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47229 * 165.02472 * 11 10 9 13 13 N 1.46900 * 109.47435 * 45.02495 * 11 10 9 14 14 C 1.46901 * 111.00158 * 154.99943 * 13 11 10 15 15 C 1.50704 * 109.46792 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00170 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99460 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99763 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99920 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00048 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99637 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00135 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46901 * 59.99948 * 22 20 18 24 24 H 1.48500 * 109.47383 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47302 * 300.00503 * 22 20 18 26 26 C 1.50703 * 109.47124 * 285.02497 * 11 10 9 27 27 C 1.38234 * 119.99902 * 79.72897 * 26 11 10 28 28 C 1.38242 * 120.00026 * 179.78676 * 27 26 11 29 29 C 1.38232 * 119.99494 * 0.44285 * 28 27 26 30 30 C 1.38236 * 120.00529 * 359.81155 * 29 28 27 31 31 C 1.38232 * 120.00165 * 260.00111 * 26 11 10 32 32 H 1.08992 * 109.47010 * 89.97140 * 1 2 3 33 33 H 1.09005 * 109.46309 * 209.97230 * 1 2 3 34 34 H 1.08996 * 109.46915 * 329.96608 * 1 2 3 35 35 H 1.07998 * 120.15890 * 0.02562 * 4 3 2 36 36 H 1.08009 * 119.77444 * 180.02562 * 5 4 3 37 37 H 1.08003 * 119.67312 * 180.28130 * 6 5 4 38 38 H 1.08002 * 120.06139 * 179.75885 * 7 6 5 39 39 H 1.00903 * 110.99811 * 31.04045 * 13 11 10 40 40 H 1.09000 * 109.46928 * 299.99968 * 14 13 11 41 41 H 1.08997 * 109.47131 * 60.00400 * 14 13 11 42 42 H 0.96997 * 120.00226 * 359.97438 * 17 15 14 43 43 H 0.97005 * 119.99597 * 179.97438 * 21 20 18 44 44 H 1.08004 * 120.00324 * 359.97438 * 27 26 11 45 45 H 1.07999 * 120.00082 * 180.27305 * 28 27 26 46 46 H 1.07999 * 119.99955 * 179.83508 * 29 28 27 47 47 H 1.08005 * 120.00275 * 180.02562 * 30 29 28 48 48 H 1.08004 * 119.99629 * 359.97438 * 31 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2833 1.1119 0.0000 4 6 2.0539 2.4812 0.0008 5 6 3.1221 3.3525 0.0011 6 6 4.4233 2.8700 0.0056 7 6 4.6681 1.5260 -0.0006 8 6 3.6008 0.6239 -0.0004 9 7 3.5205 -0.7315 -0.0011 10 6 2.2713 -1.0956 -0.0010 11 6 1.7882 -2.5231 -0.0023 12 1 0.7314 -2.5492 0.2636 13 7 2.5588 -3.3017 0.9764 14 6 1.7935 -4.4656 1.4432 15 6 2.6141 -5.2378 2.4439 16 8 3.7270 -4.8564 2.7388 17 7 2.1116 -6.3527 3.0104 18 6 2.8583 -7.0555 3.9204 19 1 3.8493 -6.7160 4.1830 20 6 2.3401 -8.2047 4.5048 21 7 1.1344 -8.6181 4.1848 22 14 3.3577 -9.1627 5.7441 23 1 3.6828 -8.2880 6.8993 24 1 2.5838 -10.3388 6.2166 25 1 4.6153 -9.6225 5.1021 26 6 1.9755 -3.1156 -1.3752 27 6 3.2212 -3.5676 -1.7688 28 6 3.3921 -4.1152 -3.0266 29 6 2.3193 -4.2023 -3.8940 30 6 1.0748 -3.7455 -3.5023 31 6 0.9030 -3.2020 -2.2430 32 1 -0.3633 0.0005 -1.0276 33 1 -0.3632 -0.8903 0.5134 34 1 -0.3633 0.8897 0.5143 35 1 1.0432 2.8620 0.0021 36 1 2.9453 4.4180 0.0021 37 1 5.2509 3.5639 0.0103 38 1 5.6846 1.1613 -0.0009 39 1 2.8472 -2.7240 1.7517 40 1 0.8702 -4.1282 1.9141 41 1 1.5554 -5.1077 0.5953 42 1 1.2217 -6.6579 2.7742 43 1 0.7728 -9.4206 4.5925 44 1 4.0603 -3.4957 -1.0926 45 1 4.3643 -4.4724 -3.3325 46 1 2.4534 -4.6277 -4.8776 47 1 0.2366 -3.8140 -4.1799 48 1 -0.0693 -2.8452 -1.9369 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126056985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:00 Heat of formation + Delta-G solvation = 77.925399 kcal Electronic energy + Delta-G solvation = -31765.186998 eV Core-core repulsion = 27592.920134 eV Total energy + Delta-G solvation = -4172.266864 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.35507 -39.41092 -38.19710 -37.58236 -35.68175 -34.38097 -33.86841 -31.55943 -31.13043 -30.75984 -30.65137 -29.55921 -27.43121 -27.16517 -25.34847 -23.70189 -22.69944 -22.49059 -22.14908 -21.17300 -19.85633 -19.26608 -17.92293 -17.47906 -17.22358 -16.89283 -16.44761 -16.03415 -15.52799 -15.38212 -14.90926 -14.79472 -14.43975 -14.26433 -14.23787 -14.06276 -13.77409 -13.59575 -13.36985 -13.32855 -13.16393 -13.07499 -12.71885 -12.30135 -12.14519 -12.09874 -11.75852 -11.59940 -11.52378 -11.49393 -11.07047 -10.99680 -10.87390 -10.49698 -10.42811 -10.19837 -9.92189 -9.48337 -8.83280 -8.73589 -8.49341 -8.43631 -8.21449 -8.14055 -7.94776 -6.40228 -3.80781 0.78812 1.34946 1.40039 1.54042 2.35194 2.65948 3.21723 3.27093 3.31890 3.74836 3.77644 3.90932 3.96386 4.07259 4.23122 4.37695 4.44597 4.71672 4.72802 4.82470 4.85511 4.86894 5.02161 5.06553 5.08542 5.18142 5.24454 5.25270 5.29363 5.30311 5.42530 5.56826 5.60604 5.70817 5.75183 5.93983 5.95744 6.00426 6.16716 6.24359 6.28345 6.36762 6.41836 6.48530 6.66208 6.71545 6.73703 6.90258 7.07464 7.14542 7.53499 7.56879 7.86937 8.07387 8.62721 9.19469 9.55372 10.07028 10.77510 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.009459 B = 0.002565 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.339713 B =10912.294284 C =12494.827343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.491 5.491 3 C 0.047 3.953 4 C -0.112 4.112 5 C -0.105 4.105 6 C -0.133 4.133 7 C -0.059 4.059 8 C 0.046 3.954 9 N -0.456 5.456 10 C 0.284 3.716 11 C 0.212 3.788 12 H 0.066 0.934 13 N -0.642 5.642 14 C 0.050 3.950 15 C 0.443 3.557 16 O -0.578 6.578 17 N -0.563 5.563 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.080 4.080 27 C -0.058 4.058 28 C -0.128 4.128 29 C -0.117 4.117 30 C -0.131 4.131 31 C -0.115 4.115 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.360 0.640 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.141 0.859 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 19.988 -14.432 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.181 5.181 3 C -0.062 4.062 4 C -0.133 4.133 5 C -0.124 4.124 6 C -0.154 4.154 7 C -0.078 4.078 8 C -0.073 4.073 9 N -0.174 5.174 10 C 0.018 3.982 11 C 0.100 3.900 12 H 0.084 0.916 13 N -0.277 5.277 14 C -0.083 4.083 15 C 0.228 3.772 16 O -0.461 6.461 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.082 4.082 27 C -0.076 4.076 28 C -0.146 4.146 29 C -0.135 4.135 30 C -0.149 4.149 31 C -0.134 4.134 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.181 0.819 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.158 0.842 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.825 19.183 -14.595 24.405 hybrid contribution -1.703 0.156 1.016 1.989 sum -5.528 19.338 -13.579 24.268 Atomic orbital electron populations 1.22015 0.76429 1.04695 1.03572 1.45126 1.06997 1.04975 1.61009 1.18878 0.91371 0.89225 1.06770 1.19892 0.99539 0.88725 1.05135 1.20846 0.92029 0.99072 1.00469 1.20625 0.96953 0.94813 1.02971 1.20075 0.97634 0.91511 0.98577 1.19170 0.92153 0.90406 1.05536 1.70496 1.16761 1.10094 1.20052 1.23343 0.85585 0.89861 0.99379 1.18704 0.95569 0.82954 0.92807 0.91647 1.60021 1.39449 1.09386 1.18797 1.21782 0.94587 0.93198 0.98687 1.19660 0.88294 0.83840 0.85390 1.90550 1.20510 1.69788 1.65267 1.41829 1.17630 1.22326 1.38229 1.19657 1.00472 1.05321 1.17325 0.87946 1.25251 0.96343 0.97449 0.98876 1.69606 1.15729 1.24957 1.44121 0.85923 0.79333 0.78664 0.80343 1.19932 1.21005 1.19845 1.19489 0.94387 1.00524 0.93793 1.21200 0.97583 0.93690 0.95172 1.21245 0.98963 1.00120 0.94301 1.21154 0.93181 0.99689 0.99504 1.20966 0.97349 1.00309 0.96235 1.20922 0.97882 1.00351 0.94208 0.90540 0.89380 0.89618 0.86329 0.85488 0.85467 0.85230 0.81860 0.93791 0.89190 0.77496 0.91857 0.84153 0.86072 0.86442 0.86375 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.92 59.85 0.65 1.19 16 2 N -0.49 -5.77 3.21 -118.50 -0.38 -6.15 16 3 C 0.05 0.59 6.87 -83.99 -0.58 0.01 16 4 C -0.11 -1.11 10.05 -39.50 -0.40 -1.51 16 5 C -0.10 -0.92 10.03 -39.52 -0.40 -1.32 16 6 C -0.13 -1.27 9.96 -39.97 -0.40 -1.67 16 7 C -0.06 -0.72 10.05 -39.61 -0.40 -1.12 16 8 C 0.05 0.68 7.23 -84.70 -0.61 0.07 16 9 N -0.46 -7.45 11.24 -8.24 -0.09 -7.54 16 10 C 0.28 4.03 6.33 -154.83 -0.98 3.05 16 11 C 0.21 2.86 2.57 -70.02 -0.18 2.68 16 12 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 13 N -0.64 -10.81 5.15 -110.45 -0.57 -11.38 16 14 C 0.05 0.88 5.96 -4.97 -0.03 0.85 16 15 C 0.44 10.49 7.82 -10.98 -0.09 10.40 16 16 O -0.58 -15.86 15.78 5.56 0.09 -15.78 16 17 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 18 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 22 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.08 -1.09 4.70 -104.62 -0.49 -1.59 16 27 C -0.06 -0.87 9.32 -39.58 -0.37 -1.24 16 28 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 29 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 30 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 31 C -0.12 -1.32 9.67 -39.58 -0.38 -1.71 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.54 6.87 -51.93 -0.36 0.18 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 37 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.36 6.60 8.05 -39.29 -0.32 6.29 16 40 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 41 H 0.09 1.50 8.00 -51.93 -0.42 1.09 16 42 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.14 2.38 7.73 -52.48 -0.41 1.98 16 45 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 48 H 0.11 1.02 8.04 -52.48 -0.42 0.60 16 LS Contribution 410.37 15.07 6.18 6.18 Total: -1.00 -34.46 410.37 -11.50 -45.96 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -6.29 Total: 16.25 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -6.08 Total: -5.52 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.38 Total: -63.30 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.46 -11.50 -45.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126056985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.890 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds