Wall clock time and date at job start Tue Mar 31 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38051 * 126.34458 * 2 1 4 4 C 1.38835 * 134.14597 * 359.97438 * 3 2 1 5 5 C 1.37848 * 119.69325 * 179.67659 * 4 3 2 6 6 C 1.38774 * 120.45154 * 0.02562 * 5 4 3 7 7 C 1.36602 * 120.66869 * 359.97438 * 6 5 4 8 8 C 1.39742 * 119.88886 * 359.96303 * 7 6 5 9 9 N 1.35776 * 133.60260 * 180.02562 * 8 7 6 10 10 C 1.30110 * 109.64342 * 180.02562 * 9 8 7 11 11 C 1.50710 * 124.95352 * 180.02562 * 10 9 8 12 12 H 1.08991 * 109.47226 * 195.02084 * 11 10 9 13 13 N 1.46898 * 109.46595 * 315.02601 * 11 10 9 14 14 C 1.46907 * 110.99327 * 204.99454 * 13 11 10 15 15 C 1.50700 * 109.46817 * 179.97438 * 14 13 11 16 16 O 1.21288 * 120.00230 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99884 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99683 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00410 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99703 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00079 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00049 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47455 * 90.00246 * 22 20 18 24 24 H 1.48503 * 109.47296 * 210.00394 * 22 20 18 25 25 H 1.48504 * 109.47279 * 329.99954 * 22 20 18 26 26 C 1.50700 * 109.46898 * 75.02392 * 11 10 9 27 27 C 1.38236 * 120.00081 * 279.73082 * 26 11 10 28 28 C 1.38232 * 120.00327 * 179.81190 * 27 26 11 29 29 C 1.38237 * 119.99557 * 0.39533 * 28 27 26 30 30 C 1.38240 * 120.00172 * 359.85322 * 29 28 27 31 31 C 1.38228 * 120.00003 * 99.99885 * 26 11 10 32 32 H 1.09011 * 109.47315 * 90.02404 * 1 2 3 33 33 H 1.09004 * 109.47348 * 210.01788 * 1 2 3 34 34 H 1.08995 * 109.47710 * 330.02259 * 1 2 3 35 35 H 1.07999 * 120.14726 * 359.69590 * 4 3 2 36 36 H 1.08004 * 119.77793 * 179.97438 * 5 4 3 37 37 H 1.08000 * 119.66709 * 179.97438 * 6 5 4 38 38 H 1.08008 * 120.05912 * 179.97438 * 7 6 5 39 39 H 1.00890 * 111.00528 * 328.94648 * 13 11 10 40 40 H 1.08993 * 109.47202 * 300.00128 * 14 13 11 41 41 H 1.08999 * 109.46672 * 60.00333 * 14 13 11 42 42 H 0.96993 * 120.00198 * 0.02562 * 17 15 14 43 43 H 0.96997 * 119.99885 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.00103 * 359.97438 * 27 26 11 45 45 H 1.08001 * 120.00235 * 180.22493 * 28 27 26 46 46 H 1.08002 * 120.00041 * 179.83315 * 29 28 27 47 47 H 1.08004 * 119.99582 * 179.97438 * 30 29 28 48 48 H 1.08001 * 120.00473 * 359.97438 * 31 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2831 1.1120 0.0000 4 6 2.0537 2.4812 -0.0004 5 6 3.1219 3.3525 0.0065 6 6 4.4231 2.8700 0.0133 7 6 4.6679 1.5261 0.0139 8 6 3.6007 0.6239 0.0083 9 7 3.5204 -0.7315 0.0077 10 6 2.2713 -1.0956 0.0006 11 6 1.7881 -2.5231 -0.0017 12 1 0.7331 -2.5491 -0.2740 13 7 2.5648 -3.3013 -0.9759 14 6 1.8024 -4.4650 -1.4478 15 6 2.6291 -5.2368 -2.4438 16 8 3.7438 -4.8553 -2.7318 17 7 2.1297 -6.3510 -3.0145 18 6 2.8820 -7.0534 -3.9202 19 1 3.8749 -6.7141 -4.1760 20 6 2.3670 -8.2018 -4.5090 21 7 3.0883 -8.8753 -5.3768 22 14 0.6500 -8.7889 -4.0660 23 1 -0.3373 -8.1728 -4.9884 24 1 0.5856 -10.2675 -4.1879 25 1 0.3365 -8.3934 -2.6694 26 6 1.9670 -3.1162 1.3721 27 6 3.2077 -3.5786 1.7692 28 6 3.3728 -4.1190 3.0307 29 6 2.2951 -4.2045 3.8923 30 6 1.0532 -3.7468 3.4934 31 6 0.8892 -3.2028 2.2332 32 1 -0.3634 -0.0004 -1.0278 33 1 -0.3634 -0.8898 0.5141 34 1 -0.3634 0.8901 0.5134 35 1 1.0431 2.8619 -0.0059 36 1 2.9451 4.4180 0.0057 37 1 5.2505 3.5640 0.0183 38 1 5.6845 1.1614 0.0188 39 1 2.8579 -2.7233 -1.7492 40 1 1.5591 -5.1074 -0.6016 41 1 0.8820 -4.1274 -1.9242 42 1 1.2382 -6.6559 -2.7845 43 1 2.7286 -9.6768 -5.7880 44 1 4.0488 -3.5153 1.0946 45 1 4.3429 -4.4770 3.3422 46 1 2.4234 -4.6292 4.8770 47 1 0.2112 -3.8140 4.1665 48 1 -0.0811 -2.8451 1.9217 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126057189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:04 Heat of formation + Delta-G solvation = 84.918337 kcal Electronic energy + Delta-G solvation = -31838.675062 eV Core-core repulsion = 27666.711434 eV Total energy + Delta-G solvation = -4171.963628 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.39248 -39.48707 -38.38215 -37.62214 -35.77784 -34.42013 -33.92714 -31.75596 -31.47362 -30.83085 -30.67629 -29.60932 -27.56892 -27.21285 -25.42368 -23.57466 -22.73677 -22.53965 -22.18948 -21.20518 -19.91926 -19.38534 -18.41000 -17.50989 -17.26214 -16.95013 -16.46159 -16.06412 -15.60730 -15.45756 -15.04323 -14.85871 -14.70009 -14.31008 -14.26728 -14.03752 -13.75240 -13.56376 -13.42437 -13.35507 -13.18859 -13.06223 -12.80136 -12.44468 -12.37865 -12.16542 -12.00169 -11.78560 -11.66300 -11.61946 -11.18504 -11.09182 -10.93843 -10.59274 -10.53449 -9.96642 -9.95673 -9.56313 -8.89651 -8.79902 -8.61719 -8.46959 -8.30719 -8.20431 -8.16355 -6.29779 -3.81134 0.75556 1.29176 1.36675 1.47768 2.31024 2.61918 3.03047 3.06359 3.15162 3.69177 3.73865 3.75046 3.88202 4.02665 4.10931 4.32308 4.38152 4.60096 4.67965 4.75528 4.80163 4.83233 4.91818 4.97118 5.03019 5.04694 5.20224 5.21266 5.24201 5.26807 5.37688 5.50505 5.54639 5.58796 5.68103 5.75676 5.90686 5.92353 5.95127 6.12247 6.24186 6.34457 6.38993 6.42204 6.60654 6.62844 6.70508 6.85510 6.98679 7.07026 7.44165 7.58874 7.82935 8.15615 8.60750 8.96328 9.43374 9.83440 10.83387 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.002677 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.373691 B =10458.071470 C =11871.923446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.491 5.491 3 C 0.047 3.953 4 C -0.113 4.113 5 C -0.104 4.104 6 C -0.133 4.133 7 C -0.058 4.058 8 C 0.046 3.954 9 N -0.455 5.455 10 C 0.283 3.717 11 C 0.212 3.788 12 H 0.066 0.934 13 N -0.642 5.642 14 C 0.047 3.953 15 C 0.452 3.548 16 O -0.558 6.558 17 N -0.590 5.590 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.082 4.082 27 C -0.058 4.058 28 C -0.127 4.127 29 C -0.117 4.117 30 C -0.130 4.130 31 C -0.116 4.116 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.361 0.639 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.141 0.859 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 20.927 17.419 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.181 5.181 3 C -0.062 4.062 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.153 4.153 7 C -0.077 4.077 8 C -0.073 4.073 9 N -0.173 5.173 10 C 0.017 3.983 11 C 0.100 3.900 12 H 0.084 0.916 13 N -0.276 5.276 14 C -0.086 4.086 15 C 0.237 3.763 16 O -0.440 6.440 17 N -0.230 5.230 18 C -0.432 4.432 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.705 3.295 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.084 4.084 27 C -0.076 4.076 28 C -0.146 4.146 29 C -0.135 4.135 30 C -0.148 4.148 31 C -0.135 4.135 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.183 0.817 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.159 0.841 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.030 20.111 17.513 27.850 hybrid contribution -2.923 0.235 -0.328 2.950 sum -10.953 20.346 17.185 28.797 Atomic orbital electron populations 1.22012 0.76464 1.04635 1.03610 1.45112 1.06961 1.04971 1.61095 1.18879 0.91362 0.89224 1.06725 1.19890 0.99547 0.88716 1.05193 1.20853 0.92030 0.99093 1.00353 1.20630 0.96967 0.94822 1.02925 1.20083 0.97663 0.91511 0.98482 1.19165 0.92157 0.90371 1.05586 1.70489 1.16745 1.10146 1.19910 1.23308 0.85600 0.89804 0.99588 1.18687 0.95521 0.83038 0.92743 0.91610 1.60010 1.39043 1.09406 1.19180 1.21817 0.94680 0.93451 0.98619 1.19557 0.88331 0.83361 0.85005 1.90595 1.20038 1.69011 1.64326 1.42182 1.16443 1.24154 1.40238 1.19432 1.01446 1.05670 1.16657 0.86230 1.25034 0.98201 0.96345 0.96592 1.69622 1.36979 1.17709 1.27831 0.86683 0.84539 0.79497 0.78749 1.19719 1.20174 1.19441 1.19500 0.94430 1.00557 0.93872 1.21212 0.97645 0.93606 0.95158 1.21261 0.98955 1.00075 0.94261 1.21166 0.93145 0.99628 0.99549 1.20966 0.97411 1.00296 0.96170 1.20910 0.97766 1.00485 0.94320 0.90550 0.89452 0.89595 0.86328 0.85462 0.85431 0.85186 0.81665 0.89068 0.93626 0.79742 0.91633 0.84070 0.86002 0.86405 0.86371 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.72 59.85 0.64 1.14 16 2 N -0.49 -5.55 3.21 -118.50 -0.38 -5.93 16 3 C 0.05 0.58 6.87 -83.99 -0.58 0.00 16 4 C -0.11 -1.08 10.05 -39.50 -0.40 -1.48 16 5 C -0.10 -0.89 10.03 -39.53 -0.40 -1.29 16 6 C -0.13 -1.25 9.96 -39.97 -0.40 -1.64 16 7 C -0.06 -0.70 10.05 -39.61 -0.40 -1.09 16 8 C 0.05 0.66 7.23 -84.70 -0.61 0.05 16 9 N -0.45 -7.25 11.24 -8.23 -0.09 -7.35 16 10 C 0.28 3.86 6.34 -154.82 -0.98 2.88 16 11 C 0.21 2.72 2.46 -70.01 -0.17 2.55 16 12 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 13 N -0.64 -10.31 5.13 -110.46 -0.57 -10.88 16 14 C 0.05 0.77 5.96 -4.97 -0.03 0.74 16 15 C 0.45 10.25 7.82 -10.98 -0.09 10.17 16 16 O -0.56 -15.13 15.78 5.55 0.09 -15.04 16 17 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 18 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.87 13.96 55.50 0.77 -25.09 16 22 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 26 C -0.08 -1.06 4.70 -104.63 -0.49 -1.55 16 27 C -0.06 -0.83 9.32 -39.58 -0.37 -1.20 16 28 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 29 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 30 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 31 C -0.12 -1.25 9.67 -39.59 -0.38 -1.63 16 32 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.09 0.46 7.30 -51.93 -0.38 0.08 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.36 6.37 8.05 -39.30 -0.32 6.06 16 40 H 0.09 1.39 8.00 -51.93 -0.42 0.97 16 41 H 0.05 0.63 8.05 -51.93 -0.42 0.21 16 42 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.14 2.32 7.71 -52.49 -0.40 1.91 16 45 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 48 H 0.11 0.92 8.04 -52.49 -0.42 0.50 16 LS Contribution 407.70 15.07 6.14 6.14 Total: -1.00 -35.80 407.70 -11.19 -46.99 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -6.29 Total: 16.10 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -6.09 Total: -5.48 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.32 Total: -63.35 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.80 -11.19 -46.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126057189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.909 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds