Wall clock time and date at job start Tue Mar 31 2020 07:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47078 * 2 1 4 4 C 1.50703 * 109.47131 * 240.00120 * 2 1 3 5 5 H 1.08002 * 119.99624 * 275.00020 * 4 2 1 6 6 C 1.37874 * 119.99770 * 95.00479 * 4 2 1 7 7 N 1.31516 * 119.99537 * 184.91345 * 6 4 2 8 8 Si 1.86793 * 120.00300 * 4.91351 * 6 4 2 9 9 H 1.48503 * 109.47198 * 84.83756 * 8 6 4 10 10 H 1.48503 * 109.47194 * 204.83689 * 8 6 4 11 11 H 1.48497 * 109.47222 * 324.83716 * 8 6 4 12 12 N 1.46494 * 109.47153 * 119.99957 * 2 1 3 13 13 C 1.46503 * 120.00267 * 59.99824 * 12 2 1 14 14 C 1.34782 * 120.00355 * 240.00285 * 12 2 1 15 15 O 1.21584 * 119.99532 * 359.97438 * 14 12 2 16 16 N 1.34775 * 120.00338 * 180.02562 * 14 12 2 17 17 C 1.38954 * 119.99905 * 180.02562 * 16 14 12 18 18 N 1.30307 * 126.08489 * 359.96924 * 17 16 14 19 19 N 1.26103 * 117.70459 * 180.02562 * 18 17 16 20 20 C 1.30326 * 117.70035 * 0.02562 * 19 18 17 21 21 C 1.47828 * 126.09212 * 180.02562 * 20 19 18 22 22 C 1.39570 * 120.13209 * 179.69717 * 21 20 19 23 23 C 1.37941 * 119.86701 * 179.74192 * 22 21 20 24 24 C 1.38470 * 120.13081 * 0.51206 * 23 22 21 25 25 Cl 1.73601 * 119.86964 * 179.74458 * 24 23 22 26 26 C 1.38482 * 120.26397 * 359.76409 * 24 23 22 27 27 C 1.37933 * 120.13011 * 359.97438 * 26 24 23 28 28 S 1.76469 * 126.08719 * 179.97438 * 17 16 14 29 29 H 1.09002 * 109.47291 * 174.97608 * 1 2 3 30 30 H 1.08996 * 109.47242 * 294.98051 * 1 2 3 31 31 H 1.09004 * 109.46997 * 54.97691 * 1 2 3 32 32 H 0.97010 * 119.99886 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47252 * 270.00458 * 13 12 2 34 34 H 1.09005 * 109.46655 * 30.00526 * 13 12 2 35 35 H 1.09001 * 109.47289 * 150.00032 * 13 12 2 36 36 H 0.96997 * 119.99970 * 359.97438 * 16 14 12 37 37 H 1.08000 * 120.06697 * 359.97438 * 22 21 20 38 38 H 1.08002 * 119.93336 * 180.25508 * 23 22 21 39 39 H 1.07999 * 119.93429 * 179.97438 * 26 24 23 40 40 H 1.07996 * 120.06749 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0122 -2.3580 7 7 2.7061 -0.6131 -3.4621 8 14 2.3137 1.8791 -2.3173 9 1 3.5993 2.3949 -1.7821 10 1 2.1059 2.3992 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.0872 1.1283 1.8907 16 7 3.2429 -0.6711 3.1836 17 6 4.0412 0.0044 4.0985 18 7 4.4263 1.2462 4.0113 19 7 5.1533 1.7010 4.9359 20 6 5.4671 0.8957 5.9114 21 6 6.3032 1.2318 7.0833 22 6 6.5563 0.2699 8.0624 23 6 7.3416 0.5878 9.1510 24 6 7.8696 1.8615 9.2788 25 17 8.8515 2.2562 10.6550 26 6 7.6172 2.8218 8.3135 27 6 6.8379 2.5141 7.2179 28 16 4.7143 -0.6668 5.5853 29 1 -0.3634 -1.0237 -0.0900 30 1 -0.3633 0.4340 0.9315 31 1 -0.3633 0.5898 -0.8416 32 1 2.9365 -0.1047 -4.2556 33 1 0.7376 -2.1443 1.9993 34 1 1.5296 -2.5969 0.4708 35 1 2.4629 -2.5818 1.9864 36 1 3.0086 -1.5997 3.3370 37 1 6.1413 -0.7225 7.9660 38 1 7.5415 -0.1569 9.9072 39 1 8.0314 3.8137 8.4188 40 1 6.6420 3.2636 6.4655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131100199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:53 Heat of formation + Delta-G solvation = 77.152562 kcal Electronic energy + Delta-G solvation = -26581.220246 eV Core-core repulsion = 22550.262223 eV Total energy + Delta-G solvation = -4030.958023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.066 amu Computer time = 5.19 seconds Orbital eigenvalues (eV) -41.20771 -39.98192 -39.48384 -36.94531 -36.05719 -34.95165 -32.93129 -32.46078 -31.64765 -30.49009 -29.10024 -26.64217 -26.06160 -25.33347 -23.73637 -23.15683 -22.21236 -20.40982 -19.76940 -18.77383 -17.87469 -17.75566 -17.15356 -16.68935 -16.09583 -15.89989 -15.49114 -15.25157 -14.90283 -14.40575 -14.18543 -14.02595 -13.96245 -13.52415 -13.38268 -13.04992 -12.52398 -12.50638 -12.41348 -12.20702 -12.08803 -12.03927 -11.54687 -11.31745 -11.30122 -11.09890 -10.78501 -10.71741 -10.52476 -10.26661 -10.07981 -9.83443 -9.58218 -9.57623 -9.32815 -9.30579 -8.67273 -8.39330 -7.83977 -6.24502 -4.27870 -0.18831 0.30067 0.80300 0.97724 1.00377 1.65099 2.55438 2.56835 3.24438 3.30181 3.37065 3.45739 3.57442 3.72450 4.01913 4.29793 4.33918 4.37110 4.67573 4.77289 4.82096 5.07645 5.12380 5.15451 5.33643 5.47165 5.66729 5.71091 5.73797 5.91134 5.99694 6.04663 6.18224 6.20828 6.30267 6.44532 6.57686 6.82636 7.10475 7.35102 7.51212 8.03972 8.36073 8.60561 8.75191 8.85895 9.37253 10.86672 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.001858 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.061409 B =15062.964504 C =15800.170220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.237 3.763 3 H 0.068 0.932 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.874 3.126 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.592 5.592 13 C 0.078 3.922 14 C 0.688 3.312 15 O -0.532 6.532 16 N -0.633 5.633 17 C 0.299 3.701 18 N -0.260 5.260 19 N -0.213 5.213 20 C 0.028 3.972 21 C -0.003 4.003 22 C -0.088 4.088 23 C -0.107 4.107 24 C -0.026 4.026 25 Cl -0.067 7.067 26 C -0.107 4.107 27 C -0.063 4.063 28 S 0.063 5.937 29 H 0.050 0.950 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.268 0.732 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.419 0.581 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -2.330 27.195 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.136 3.864 3 H 0.085 0.915 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.701 3.299 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.328 5.328 13 C -0.066 4.066 14 C 0.387 3.613 15 O -0.403 6.403 16 N -0.288 5.288 17 C -0.072 4.072 18 N -0.105 5.105 19 N -0.051 5.051 20 C -0.251 4.251 21 C -0.007 4.007 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.054 4.054 25 Cl -0.038 7.038 26 C -0.126 4.126 27 C -0.085 4.085 28 S 0.303 5.697 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.259 0.741 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.808 -1.224 26.541 27.428 hybrid contribution -0.030 0.154 -0.001 0.157 sum 6.778 -1.070 26.540 27.413 Atomic orbital electron populations 1.22218 0.97903 1.01026 0.99364 1.19364 0.90824 0.94825 0.81352 0.91452 1.21084 1.45193 0.95658 0.94664 0.90289 1.24953 0.93470 0.98693 0.95190 1.69882 1.44506 1.36254 1.01716 0.86896 0.80198 0.85758 0.77080 1.19391 1.21281 1.18706 1.47884 1.50534 1.11639 1.22752 1.21669 0.98481 0.83113 1.03351 1.16144 0.80523 0.85374 0.79266 1.91041 1.59959 1.14418 1.74854 1.42650 1.49830 1.15337 1.21032 1.26824 0.96094 0.91899 0.92396 1.71794 1.12981 1.07297 1.18402 1.71407 1.08254 1.28042 0.97366 1.27255 1.05949 0.91200 1.00668 1.17689 0.97172 0.94832 0.91055 1.21140 0.97930 0.98897 0.92919 1.20912 0.97721 0.95216 0.98668 1.21113 0.97871 0.95409 0.90972 1.98387 1.68967 1.94165 1.42306 1.21060 0.98940 0.99587 0.92994 1.21292 0.94438 0.95526 0.97227 1.85465 1.49440 1.15496 1.19278 0.93045 0.95389 0.92280 0.92225 0.93309 0.88951 0.93350 0.74130 0.84735 0.84164 0.84065 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.10 37.16 0.34 -2.60 16 2 C 0.24 5.49 2.30 -69.08 -0.16 5.33 16 3 H 0.07 1.75 4.05 -51.93 -0.21 1.54 16 4 C -0.53 -13.96 8.72 -34.44 -0.30 -14.26 16 5 H 0.08 2.18 6.82 -52.49 -0.36 1.82 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 8 Si 0.87 22.02 26.99 -169.99 -4.59 17.43 16 9 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.26 -6.37 6.82 56.52 0.39 -5.98 16 12 N -0.59 -11.65 2.75 -181.00 -0.50 -12.15 16 13 C 0.08 1.11 9.35 59.85 0.56 1.67 16 14 C 0.69 13.94 8.24 -86.91 -0.72 13.23 16 15 O -0.53 -13.27 14.37 5.29 0.08 -13.19 16 16 N -0.63 -9.66 5.27 -16.00 -0.08 -9.74 16 17 C 0.30 4.67 8.41 -86.84 -0.73 3.94 16 18 N -0.26 -4.93 9.79 31.05 0.30 -4.63 16 19 N -0.21 -3.50 11.23 33.01 0.37 -3.13 16 20 C 0.03 0.36 7.44 -14.27 -0.11 0.25 16 21 C 0.00 -0.03 5.87 -104.98 -0.62 -0.64 16 22 C -0.09 -0.67 9.62 -39.19 -0.38 -1.05 16 23 C -0.11 -0.72 9.81 -39.60 -0.39 -1.11 16 24 C -0.03 -0.19 6.32 -39.41 -0.25 -0.44 16 25 Cl -0.07 -0.47 28.95 -51.86 -1.50 -1.98 16 26 C -0.11 -0.82 9.81 -39.60 -0.39 -1.21 16 27 C -0.06 -0.58 9.69 -39.19 -0.38 -0.96 16 28 S 0.06 0.67 22.56 -107.50 -2.43 -1.75 16 29 H 0.05 0.94 7.84 -51.93 -0.41 0.54 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.46 6.56 -51.93 -0.34 1.12 16 35 H 0.05 0.53 6.36 -51.93 -0.33 0.20 16 36 H 0.42 4.55 6.55 -40.82 -0.27 4.29 16 37 H 0.13 0.79 7.35 -52.49 -0.39 0.40 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.15 1.39 7.85 -52.49 -0.41 0.98 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -34.56 369.31 -9.60 -44.16 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.98 Total: 0.38 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.61 Total: 4.34 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.87 Total: -54.95 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.59 Total: 17.43 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.43 Total: -1.75 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.56 -9.60 -44.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131100199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.313 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.19 seconds