Wall clock time and date at job start Tue Mar 31 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38105 * 120.00581 * 2 1 4 4 C 1.38727 * 120.01249 * 179.97438 * 3 2 1 5 5 O 1.35955 * 119.99051 * 179.97438 * 4 3 2 6 6 C 1.35726 * 117.99355 * 75.25335 * 5 4 3 7 7 C 1.38996 * 119.91243 * 354.81679 * 6 5 4 8 8 C 1.37722 * 120.09444 * 179.72202 * 7 6 5 9 9 C 1.39766 * 119.90548 * 0.57530 * 8 7 6 10 10 C 1.43200 * 120.09290 * 179.67768 * 9 8 7 11 11 N 8.72078 * 110.26778 * 44.31133 * 2 1 3 12 12 C 1.39770 * 119.81589 * 359.70428 * 9 8 7 13 13 C 1.37716 * 119.90653 * 359.97438 * 12 9 8 14 14 C 1.38768 * 120.02099 * 359.97438 * 4 3 2 15 15 C 1.38063 * 120.01350 * 359.97438 * 14 4 3 16 16 C 1.38826 * 120.00711 * 179.97438 * 2 1 3 17 17 N 1.40123 * 120.01038 * 0.05085 * 16 2 1 18 18 C 1.34783 * 120.00091 * 204.78342 * 17 16 2 19 19 O 1.21591 * 119.99470 * 5.67525 * 18 17 16 20 20 N 1.34777 * 119.99978 * 185.68241 * 18 17 16 21 21 C 1.46496 * 119.99438 * 179.97438 * 20 18 17 22 22 H 1.08999 * 109.47218 * 324.99519 * 21 20 18 23 23 C 1.52999 * 109.47648 * 85.00127 * 21 20 18 24 24 C 1.50710 * 109.46853 * 205.00079 * 21 20 18 25 25 H 1.08005 * 119.99556 * 359.97438 * 24 21 20 26 26 C 1.37870 * 120.00070 * 180.02562 * 24 21 20 27 27 N 1.31515 * 120.00223 * 179.97438 * 26 24 21 28 28 Si 1.86798 * 120.00012 * 359.97438 * 26 24 21 29 29 H 1.48502 * 109.47506 * 90.00141 * 28 26 24 30 30 H 1.48505 * 109.47228 * 209.99922 * 28 26 24 31 31 H 1.48494 * 109.47317 * 329.99911 * 28 26 24 32 32 H 1.09002 * 109.47046 * 89.99895 * 1 2 3 33 33 H 1.08998 * 109.47229 * 210.00266 * 1 2 3 34 34 H 1.09001 * 109.47228 * 330.00580 * 1 2 3 35 35 H 1.08003 * 119.99378 * 359.69419 * 3 2 1 36 36 H 1.08003 * 119.95044 * 359.97438 * 7 6 5 37 37 H 1.07995 * 120.05190 * 180.29241 * 8 7 6 38 38 H 1.08002 * 120.04634 * 179.97438 * 12 9 8 39 39 H 1.08001 * 119.95475 * 180.02562 * 13 12 9 40 40 H 1.08007 * 119.99358 * 179.97438 * 14 4 3 41 41 H 1.08001 * 120.00228 * 180.02562 * 15 14 4 42 42 H 0.96998 * 120.00455 * 24.77297 * 17 16 2 43 43 H 0.96996 * 119.99911 * 359.97438 * 20 18 17 44 44 H 1.08998 * 109.46787 * 59.99466 * 23 21 20 45 45 H 1.08995 * 109.47488 * 179.97438 * 23 21 20 46 46 H 1.08998 * 109.46465 * 299.99548 * 23 21 20 47 47 H 0.97000 * 120.00258 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1960 0.0000 4 6 3.5849 1.1961 0.0005 5 8 4.2643 2.3737 0.0000 6 6 4.3180 3.0788 1.1585 7 6 3.6004 2.6457 2.2674 8 6 3.6567 3.3551 3.4465 9 6 4.4273 4.5185 3.5237 10 6 4.4832 5.2630 4.7457 11 7 4.5279 5.8538 5.7148 12 6 5.1428 4.9537 2.4046 13 6 5.0862 4.2349 1.2313 14 6 4.2793 -0.0053 0.0016 15 6 3.5899 -1.2015 0.0027 16 6 2.2013 -1.2022 0.0005 17 7 1.5010 -2.4159 0.0000 18 6 2.0818 -3.5292 0.4898 19 8 3.1712 -3.4612 1.0254 20 7 1.4550 -4.7178 0.3855 21 6 2.0866 -5.9279 0.9174 22 1 3.1661 -5.8645 0.7806 23 6 1.7681 -6.0565 2.4083 24 6 1.5575 -7.1341 0.1849 25 1 0.8238 -7.0114 -0.5981 26 6 2.0092 -8.3942 0.5151 27 7 1.5471 -9.4468 -0.1237 28 14 3.2776 -8.6063 1.8699 29 1 2.5862 -8.7839 3.1721 30 1 4.1110 -9.8020 1.5850 31 1 4.1442 -7.4019 1.9298 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3634 0.8900 0.5137 35 1 1.6576 2.1313 -0.0050 36 1 3.0010 1.7494 2.2053 37 1 3.1026 3.0154 4.3090 38 1 5.7391 5.8525 2.4600 39 1 5.6391 4.5702 0.3663 40 1 5.3594 -0.0047 0.0016 41 1 4.1305 -2.1364 0.0039 42 1 0.5983 -2.4549 -0.3527 43 1 0.5858 -4.7720 -0.0416 44 1 0.6886 -6.1199 2.5450 45 1 2.2376 -6.9570 2.8039 46 1 2.1509 -5.1841 2.9380 47 1 1.8653 -10.3333 0.1084 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158375708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:24 Heat of formation + Delta-G solvation = 34.669008 kcal Electronic energy + Delta-G solvation = -30832.963413 eV Core-core repulsion = 26561.102148 eV Total energy + Delta-G solvation = -4271.861264 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.39037 -40.42353 -39.07923 -38.01428 -36.51198 -35.35041 -34.41329 -32.78662 -32.50951 -31.70266 -31.02842 -30.19352 -28.74432 -27.08111 -25.27794 -24.54023 -23.46835 -23.08570 -21.85493 -21.14588 -20.14334 -19.34011 -18.80015 -18.55446 -17.69930 -16.94583 -16.54179 -16.07679 -15.55175 -15.18627 -15.12317 -14.95224 -14.60184 -14.38941 -14.27787 -14.07137 -13.97375 -13.82825 -13.80713 -13.43931 -13.28294 -13.24573 -13.03571 -12.91925 -12.55258 -12.40378 -12.27498 -12.13494 -12.01084 -11.86629 -11.53192 -11.40196 -11.14992 -10.87107 -10.39118 -10.24500 -9.86766 -9.61049 -9.54829 -9.32322 -8.97551 -8.85320 -8.73181 -8.41291 -7.91824 -6.28248 -4.31751 0.37787 0.81454 0.90063 1.14310 2.33061 2.54310 2.70393 2.89644 3.18240 3.31004 3.34000 3.34654 3.44824 3.54957 3.72873 4.24812 4.29197 4.39406 4.50320 4.56604 4.63515 4.67062 4.86021 4.93908 5.05544 5.06548 5.08723 5.30633 5.33328 5.42160 5.44673 5.53080 5.66935 5.78103 5.81382 5.85306 5.91094 6.10100 6.16176 6.21379 6.24651 6.27915 6.38744 6.46899 6.70333 6.81268 6.92382 7.14673 7.16071 7.25718 7.31133 7.42049 8.14903 8.45000 8.68618 8.88068 9.31720 10.83677 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.001844 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.405274 B =15177.219183 C =15965.826621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C -0.108 4.108 4 C 0.041 3.959 5 O -0.247 6.247 6 C 0.159 3.841 7 C -0.198 4.198 8 C -0.028 4.028 9 C -0.074 4.074 10 C 0.260 3.740 11 N -0.426 5.426 12 C -0.032 4.032 13 C -0.151 4.151 14 C -0.096 4.096 15 C -0.116 4.116 16 C 0.194 3.806 17 N -0.688 5.688 18 C 0.694 3.306 19 O -0.579 6.579 20 N -0.708 5.708 21 C 0.253 3.747 22 H 0.051 0.949 23 C -0.163 4.163 24 C -0.537 4.537 25 H 0.080 0.920 26 C 0.079 3.921 27 N -0.890 5.890 28 Si 0.885 3.115 29 H -0.276 1.276 30 H -0.293 1.293 31 H -0.261 1.261 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.161 0.839 42 H 0.406 0.594 43 H 0.394 0.606 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.036 0.964 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 26.062 -0.610 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.120 4.120 3 C -0.127 4.127 4 C -0.002 4.002 5 O -0.158 6.158 6 C 0.113 3.887 7 C -0.217 4.217 8 C -0.048 4.048 9 C -0.077 4.077 10 C -0.055 4.055 11 N -0.102 5.102 12 C -0.052 4.052 13 C -0.170 4.170 14 C -0.115 4.115 15 C -0.137 4.137 16 C 0.096 3.904 17 N -0.334 5.334 18 C 0.394 3.606 19 O -0.457 6.457 20 N -0.359 5.359 21 C 0.149 3.851 22 H 0.069 0.931 23 C -0.221 4.221 24 C -0.575 4.575 25 H 0.098 0.902 26 C -0.125 4.125 27 N -0.527 5.527 28 Si 0.715 3.285 29 H -0.203 1.203 30 H -0.221 1.221 31 H -0.186 1.186 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.179 0.821 42 H 0.242 0.758 43 H 0.227 0.773 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.713 26.691 1.180 26.772 hybrid contribution -0.431 -0.727 0.051 0.847 sum 1.282 25.964 1.231 26.025 Atomic orbital electron populations 1.20729 0.90457 1.03285 1.02606 1.19406 0.96275 0.90843 1.05453 1.20974 0.92697 0.97910 1.01150 1.18492 0.90091 0.83677 1.07953 1.84443 1.69558 1.31559 1.30204 1.19581 0.92932 0.91133 0.85005 1.21384 1.04066 1.03292 0.92922 1.20989 0.94679 0.91564 0.97612 1.15937 1.05844 0.97155 0.88798 1.25652 0.93581 0.93361 0.92881 1.81266 1.08702 1.09348 1.10864 1.20946 0.95558 0.98465 0.90274 1.20341 1.02457 0.94811 0.99371 1.21113 1.00711 0.90314 0.99333 1.21486 0.92643 0.99526 1.00010 1.17543 0.91366 0.84228 0.97261 1.42937 1.18895 1.06713 1.64900 1.16131 0.84517 0.80509 0.79410 1.90847 1.20690 1.85030 1.49180 1.45517 1.22974 1.05875 1.61537 1.19066 0.94839 0.81188 0.89961 0.93141 1.22483 1.01219 0.99462 0.98965 1.20996 1.26826 0.89058 1.20654 0.90169 1.24813 0.95903 0.95536 0.96209 1.69858 1.43031 0.98689 1.41098 0.86878 0.81886 0.77846 0.81896 1.20276 1.22083 1.18591 0.90859 0.91385 0.90973 0.85018 0.83885 0.84628 0.84241 0.83884 0.84842 0.82137 0.75760 0.77281 0.92819 0.93313 0.94447 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.44 36.00 0.34 -0.44 16 2 C -0.12 -1.12 5.89 -104.45 -0.62 -1.73 16 3 C -0.11 -0.98 8.03 -39.45 -0.32 -1.30 16 4 C 0.04 0.41 4.68 -39.20 -0.18 0.23 16 5 O -0.25 -2.39 9.97 -3.25 -0.03 -2.42 16 6 C 0.16 1.31 6.63 -39.02 -0.26 1.05 16 7 C -0.20 -1.57 8.91 -39.49 -0.35 -1.93 16 8 C -0.03 -0.20 9.75 -39.20 -0.38 -0.58 16 9 C -0.07 -0.53 5.74 -106.83 -0.61 -1.14 16 10 C 0.26 2.36 15.33 -22.48 -0.34 2.01 16 11 N -0.43 -4.91 18.54 41.83 0.78 -4.14 16 12 C -0.03 -0.18 9.75 -39.20 -0.38 -0.57 16 13 C -0.15 -0.96 9.97 -39.49 -0.39 -1.36 16 14 C -0.10 -1.08 9.98 -39.45 -0.39 -1.47 16 15 C -0.12 -1.55 8.71 -39.42 -0.34 -1.89 16 16 C 0.19 2.38 6.41 -83.62 -0.54 1.84 16 17 N -0.69 -8.68 4.99 -14.19 -0.07 -8.75 16 18 C 0.69 11.90 8.33 -86.91 -0.72 11.18 16 19 O -0.58 -11.84 13.17 5.29 0.07 -11.77 16 20 N -0.71 -12.77 5.07 -59.81 -0.30 -13.07 16 21 C 0.25 5.67 2.15 -69.08 -0.15 5.52 16 22 H 0.05 1.25 6.64 -51.93 -0.34 0.91 16 23 C -0.16 -3.45 8.96 37.16 0.33 -3.12 16 24 C -0.54 -13.82 9.31 -34.44 -0.32 -14.14 16 25 H 0.08 2.17 7.98 -52.48 -0.42 1.75 16 26 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 27 N -0.89 -25.52 13.96 55.43 0.77 -24.74 16 28 Si 0.89 20.99 24.37 -169.99 -4.14 16.84 16 29 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.47 6.98 -51.93 -0.36 0.11 16 34 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 36 H 0.14 1.20 5.97 -52.48 -0.31 0.89 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.16 2.54 5.78 -52.49 -0.30 2.24 16 42 H 0.41 3.83 7.41 -40.82 -0.30 3.53 16 43 H 0.39 6.07 8.56 -40.82 -0.35 5.72 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -31.87 397.70 -8.22 -40.09 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.55 Total: 7.76 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -5.73 Total: -5.79 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 1.17 Total: -50.70 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.04 Total: -14.19 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.14 Total: 16.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.87 -8.22 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158375708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.757 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds