Wall clock time and date at job start Tue Mar 31 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38105 * 120.00581 * 2 1 4 4 C 1.38727 * 120.01249 * 179.97438 * 3 2 1 5 5 O 1.35955 * 119.99051 * 179.97438 * 4 3 2 6 6 C 1.35726 * 117.99355 * 75.25335 * 5 4 3 7 7 C 1.38996 * 119.91243 * 354.81679 * 6 5 4 8 8 C 1.37722 * 120.09444 * 179.72202 * 7 6 5 9 9 C 1.39766 * 119.90548 * 0.57530 * 8 7 6 10 10 C 1.43200 * 120.09290 * 179.67768 * 9 8 7 11 11 N 8.72078 * 110.26778 * 44.31133 * 2 1 3 12 12 C 1.39770 * 119.81589 * 359.70428 * 9 8 7 13 13 C 1.37716 * 119.90653 * 359.97438 * 12 9 8 14 14 C 1.38768 * 120.02099 * 359.97438 * 4 3 2 15 15 C 1.38063 * 120.01350 * 359.97438 * 14 4 3 16 16 C 1.38826 * 120.00711 * 179.97438 * 2 1 3 17 17 N 1.40123 * 120.01038 * 0.05085 * 16 2 1 18 18 C 1.34783 * 120.00091 * 204.78342 * 17 16 2 19 19 O 1.21591 * 119.99470 * 5.67525 * 18 17 16 20 20 N 1.34777 * 119.99978 * 185.68241 * 18 17 16 21 21 C 1.46496 * 119.99438 * 179.97438 * 20 18 17 22 22 H 1.08999 * 109.47218 * 324.99519 * 21 20 18 23 23 C 1.52999 * 109.47648 * 85.00127 * 21 20 18 24 24 C 1.50710 * 109.46853 * 205.00079 * 21 20 18 25 25 H 1.08005 * 119.99556 * 359.97438 * 24 21 20 26 26 C 1.37870 * 120.00070 * 180.02562 * 24 21 20 27 27 N 1.31515 * 120.00223 * 179.97438 * 26 24 21 28 28 Si 1.86798 * 120.00012 * 359.97438 * 26 24 21 29 29 H 1.48502 * 109.47506 * 90.00141 * 28 26 24 30 30 H 1.48505 * 109.47228 * 209.99922 * 28 26 24 31 31 H 1.48494 * 109.47317 * 329.99911 * 28 26 24 32 32 H 1.09002 * 109.47046 * 89.99895 * 1 2 3 33 33 H 1.08998 * 109.47229 * 210.00266 * 1 2 3 34 34 H 1.09001 * 109.47228 * 330.00580 * 1 2 3 35 35 H 1.08003 * 119.99378 * 359.69419 * 3 2 1 36 36 H 1.08003 * 119.95044 * 359.97438 * 7 6 5 37 37 H 1.07995 * 120.05190 * 180.29241 * 8 7 6 38 38 H 1.08002 * 120.04634 * 179.97438 * 12 9 8 39 39 H 1.08001 * 119.95475 * 180.02562 * 13 12 9 40 40 H 1.08007 * 119.99358 * 179.97438 * 14 4 3 41 41 H 1.08001 * 120.00228 * 180.02562 * 15 14 4 42 42 H 0.96998 * 120.00455 * 24.77297 * 17 16 2 43 43 H 0.96996 * 119.99911 * 359.97438 * 20 18 17 44 44 H 1.08998 * 109.46787 * 59.99466 * 23 21 20 45 45 H 1.08995 * 109.47488 * 179.97438 * 23 21 20 46 46 H 1.08998 * 109.46465 * 299.99548 * 23 21 20 47 47 H 0.97000 * 120.00258 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1960 0.0000 4 6 3.5849 1.1961 0.0005 5 8 4.2643 2.3737 0.0000 6 6 4.3180 3.0788 1.1585 7 6 3.6004 2.6457 2.2674 8 6 3.6567 3.3551 3.4465 9 6 4.4273 4.5185 3.5237 10 6 4.4832 5.2630 4.7457 11 7 4.5279 5.8538 5.7148 12 6 5.1428 4.9537 2.4046 13 6 5.0862 4.2349 1.2313 14 6 4.2793 -0.0053 0.0016 15 6 3.5899 -1.2015 0.0027 16 6 2.2013 -1.2022 0.0005 17 7 1.5010 -2.4159 0.0000 18 6 2.0818 -3.5292 0.4898 19 8 3.1712 -3.4612 1.0254 20 7 1.4550 -4.7178 0.3855 21 6 2.0866 -5.9279 0.9174 22 1 3.1661 -5.8645 0.7806 23 6 1.7681 -6.0565 2.4083 24 6 1.5575 -7.1341 0.1849 25 1 0.8238 -7.0114 -0.5981 26 6 2.0092 -8.3942 0.5151 27 7 1.5471 -9.4468 -0.1237 28 14 3.2776 -8.6063 1.8699 29 1 2.5862 -8.7839 3.1721 30 1 4.1110 -9.8020 1.5850 31 1 4.1442 -7.4019 1.9298 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3634 0.8900 0.5137 35 1 1.6576 2.1313 -0.0050 36 1 3.0010 1.7494 2.2053 37 1 3.1026 3.0154 4.3090 38 1 5.7391 5.8525 2.4600 39 1 5.6391 4.5702 0.3663 40 1 5.3594 -0.0047 0.0016 41 1 4.1305 -2.1364 0.0039 42 1 0.5983 -2.4549 -0.3527 43 1 0.5858 -4.7720 -0.0416 44 1 0.6886 -6.1199 2.5450 45 1 2.2376 -6.9570 2.8039 46 1 2.1509 -5.1841 2.9380 47 1 1.8653 -10.3333 0.1084 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158375708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:21 Heat of formation + Delta-G solvation = 15.728613 kcal Electronic energy + Delta-G solvation = -30833.784730 eV Core-core repulsion = 26561.102148 eV Total energy + Delta-G solvation = -4272.682582 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -42.18702 -41.48648 -39.91565 -38.89870 -37.29611 -36.91876 -35.56726 -34.39100 -33.58596 -32.31777 -31.88297 -31.48000 -29.71274 -27.82203 -27.20444 -25.34225 -24.16417 -23.93733 -23.07203 -22.09339 -21.63264 -20.00895 -19.93479 -19.44556 -18.84316 -18.22910 -17.61885 -17.20699 -17.07327 -16.28205 -16.06497 -15.78582 -15.67121 -15.21440 -15.16831 -15.00783 -14.94480 -14.80014 -14.58916 -14.51771 -14.44868 -14.18972 -14.10732 -13.96712 -13.73718 -13.64049 -13.23005 -13.18180 -13.02536 -12.78439 -12.76059 -12.62424 -12.20975 -12.13652 -11.85918 -11.62073 -11.44837 -11.26221 -10.99158 -10.85635 -10.12376 -9.97360 -9.80031 -9.36883 -8.88867 -8.37069 -6.43002 -0.22525 0.04122 0.27996 0.33718 1.29272 1.37933 1.46579 1.61428 1.62376 1.88477 1.92636 2.24352 2.27200 2.76353 2.86242 2.90095 2.99638 3.28347 3.74498 3.82120 3.85773 3.88572 4.06630 4.18738 4.27523 4.41320 4.42563 4.46118 4.53789 4.57610 4.68743 4.71588 4.85735 4.91877 4.94235 4.97924 4.99510 5.11519 5.18911 5.23980 5.28523 5.31290 5.36454 5.37784 5.40319 5.47920 5.61390 5.62705 5.88322 5.96637 6.26619 6.45432 6.53769 6.59553 7.08445 7.22699 7.54607 8.77851 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.001844 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.405274 B =15177.219183 C =15965.826621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.100 4.100 3 C -0.102 4.102 4 C 0.049 3.951 5 O -0.254 6.254 6 C 0.145 3.855 7 C -0.205 4.205 8 C -0.026 4.026 9 C -0.079 4.079 10 C 0.284 3.716 11 N -0.473 5.473 12 C -0.020 4.020 13 C -0.147 4.147 14 C -0.105 4.105 15 C -0.136 4.136 16 C 0.168 3.832 17 N -0.670 5.670 18 C 0.696 3.304 19 O -0.614 6.614 20 N -0.708 5.708 21 C 0.260 3.740 22 H 0.026 0.974 23 C -0.156 4.156 24 C -0.532 4.532 25 H 0.059 0.941 26 C 0.030 3.970 27 N -0.932 5.932 28 Si 0.937 3.063 29 H -0.261 1.261 30 H -0.294 1.294 31 H -0.261 1.261 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.423 0.577 43 H 0.407 0.593 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.045 0.955 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 28.923 -0.279 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.104 4.104 3 C -0.121 4.121 4 C 0.007 3.993 5 O -0.165 6.165 6 C 0.100 3.900 7 C -0.223 4.223 8 C -0.047 4.047 9 C -0.083 4.083 10 C -0.030 4.030 11 N -0.150 5.150 12 C -0.040 4.040 13 C -0.165 4.165 14 C -0.124 4.124 15 C -0.156 4.156 16 C 0.071 3.929 17 N -0.318 5.318 18 C 0.396 3.604 19 O -0.495 6.495 20 N -0.360 5.360 21 C 0.155 3.845 22 H 0.043 0.957 23 C -0.214 4.214 24 C -0.570 4.570 25 H 0.077 0.923 26 C -0.170 4.170 27 N -0.571 5.571 28 Si 0.765 3.235 29 H -0.186 1.186 30 H -0.222 1.222 31 H -0.185 1.185 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.176 0.824 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.262 0.738 43 H 0.242 0.758 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.063 29.613 1.493 29.670 hybrid contribution -0.226 -1.435 -0.151 1.460 sum 0.837 28.178 1.343 28.223 Atomic orbital electron populations 1.20845 0.88084 1.04291 1.03976 1.19670 0.97827 0.89674 1.03184 1.21246 0.92270 0.98725 0.99863 1.18530 0.90632 0.83548 1.06633 1.84410 1.69832 1.31206 1.31042 1.19807 0.93842 0.91736 0.84610 1.21341 1.04433 1.03321 0.93221 1.21088 0.94531 0.91327 0.97717 1.16011 1.06585 0.97192 0.88506 1.25835 0.92185 0.92361 0.92577 1.81294 1.10423 1.10982 1.12258 1.21211 0.94679 0.98843 0.89267 1.20577 1.01813 0.93941 1.00164 1.21122 1.01053 0.90337 0.99878 1.21262 0.93439 0.98978 1.01950 1.17708 0.91135 0.84725 0.99283 1.42575 1.19405 1.05645 1.64141 1.16155 0.83965 0.81043 0.79190 1.90838 1.22260 1.85678 1.50688 1.45161 1.23494 1.05250 1.62114 1.18669 0.93469 0.81601 0.90761 0.95653 1.22368 1.02009 0.99422 0.97635 1.21222 1.25606 0.90281 1.19882 0.92312 1.25516 0.97690 0.95479 0.98288 1.69966 1.44880 0.99242 1.43015 0.86036 0.79860 0.77508 0.80137 1.18630 1.22196 1.18538 0.89177 0.91326 0.89077 0.82448 0.84480 0.83584 0.81724 0.81992 0.84460 0.85340 0.73810 0.75779 0.91556 0.94120 0.93546 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.44 71.24 0.67 -0.52 16 2 C -0.10 -1.69 5.89 -19.76 -0.12 -1.81 16 3 C -0.10 -1.59 8.03 22.36 0.18 -1.41 16 4 C 0.05 0.93 4.68 22.51 0.11 1.04 16 5 O -0.25 -4.40 9.97 -34.55 -0.34 -4.75 16 6 C 0.14 2.06 6.63 22.63 0.15 2.21 16 7 C -0.20 -2.85 8.91 22.33 0.20 -2.65 16 8 C -0.03 -0.32 9.75 22.52 0.22 -0.10 16 9 C -0.08 -0.95 5.74 -21.29 -0.12 -1.07 16 10 C 0.28 4.70 15.33 88.33 1.35 6.06 16 11 N -0.47 -10.51 18.54 19.00 0.35 -10.15 16 12 C -0.02 -0.17 9.75 22.52 0.22 0.05 16 13 C -0.15 -1.43 9.97 22.33 0.22 -1.21 16 14 C -0.10 -2.37 9.98 22.36 0.22 -2.15 16 15 C -0.14 -3.72 8.71 22.38 0.19 -3.52 16 16 C 0.17 4.01 6.41 38.10 0.24 4.25 16 17 N -0.67 -16.42 4.99 -317.06 -1.58 -18.00 16 18 C 0.70 23.95 8.33 179.05 1.49 25.44 16 19 O -0.61 -25.73 13.17 -4.00 -0.05 -25.78 16 20 N -0.71 -25.46 5.07 -461.40 -2.34 -27.80 16 21 C 0.26 11.70 2.15 44.25 0.10 11.79 16 22 H 0.03 1.29 6.64 -2.39 -0.02 1.27 16 23 C -0.16 -6.45 8.96 71.98 0.65 -5.81 16 24 C -0.53 -27.72 9.31 25.60 0.24 -27.48 16 25 H 0.06 3.25 7.98 -2.91 -0.02 3.23 16 26 C 0.03 1.65 5.45 84.65 0.46 2.12 16 27 N -0.93 -54.41 13.96 21.44 0.30 -54.11 16 28 Si 0.94 43.44 24.37 68.60 1.67 45.11 16 29 H -0.26 -11.36 6.87 99.48 0.68 -10.68 16 30 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 31 H -0.26 -11.98 6.53 99.48 0.65 -11.33 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.73 6.98 -2.39 -0.02 0.72 16 34 H 0.09 0.65 8.09 -2.39 -0.02 0.63 16 35 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 36 H 0.14 2.07 5.97 -2.91 -0.02 2.05 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.13 4.38 5.78 -2.91 -0.02 4.36 16 42 H 0.42 7.30 7.41 -92.71 -0.69 6.61 16 43 H 0.41 12.35 8.56 -92.71 -0.79 11.56 16 44 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.04 1.74 3.27 -2.39 -0.01 1.73 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -70.79 397.70 4.18 -66.61 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -0.50 Total: 23.66 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 6.68 Total: 5.22 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -3.27 Total: -110.06 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.40 Total: -30.53 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Total: -70.79 4.18 -66.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158375708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.339 kcal (2) G-P(sol) polarization free energy of solvation -70.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds