Wall clock time and date at job start Tue Mar 31 2020 06:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38104 * 120.00974 * 2 1 4 4 C 1.38727 * 120.01022 * 180.02562 * 3 2 1 5 5 O 1.35955 * 119.98608 * 180.02562 * 4 3 2 6 6 C 1.35726 * 118.00160 * 255.25276 * 5 4 3 7 7 C 1.39002 * 119.90830 * 354.81667 * 6 5 4 8 8 C 1.37715 * 120.09197 * 179.76557 * 7 6 5 9 9 C 1.39769 * 119.90930 * 0.50980 * 8 7 6 10 10 C 1.43192 * 120.09326 * 179.72279 * 9 8 7 11 11 N 9.12655 * 128.10987 * 307.22718 * 2 1 3 12 12 C 1.39768 * 119.81593 * 359.74526 * 9 8 7 13 13 C 1.37726 * 119.90429 * 359.97438 * 12 9 8 14 14 C 1.38770 * 120.02650 * 0.02562 * 4 3 2 15 15 C 1.38058 * 120.00884 * 359.69928 * 14 4 3 16 16 C 1.38829 * 120.00516 * 180.02562 * 2 1 3 17 17 N 1.40137 * 120.00909 * 359.95212 * 16 2 1 18 18 C 1.34773 * 119.99755 * 155.47064 * 17 16 2 19 19 O 1.21587 * 120.00384 * 354.32159 * 18 17 16 20 20 N 1.34777 * 119.99550 * 174.31565 * 18 17 16 21 21 C 1.46503 * 119.99582 * 180.27783 * 20 18 17 22 22 H 1.08998 * 109.47389 * 34.72679 * 21 20 18 23 23 C 1.53002 * 109.47216 * 274.72371 * 21 20 18 24 24 C 1.50705 * 109.47165 * 154.72575 * 21 20 18 25 25 H 1.07998 * 119.99932 * 0.02562 * 24 21 20 26 26 C 1.37872 * 120.00266 * 180.02562 * 24 21 20 27 27 N 1.31519 * 120.00095 * 359.97438 * 26 24 21 28 28 Si 1.86801 * 120.00168 * 180.02562 * 26 24 21 29 29 H 1.48497 * 109.46869 * 359.97438 * 28 26 24 30 30 H 1.48502 * 109.46932 * 119.99933 * 28 26 24 31 31 H 1.48497 * 109.46949 * 239.99774 * 28 26 24 32 32 H 1.09000 * 109.46731 * 269.97917 * 1 2 3 33 33 H 1.08998 * 109.46461 * 29.97320 * 1 2 3 34 34 H 1.08991 * 109.47519 * 149.97613 * 1 2 3 35 35 H 1.07997 * 119.99627 * 0.04890 * 3 2 1 36 36 H 1.07996 * 119.95019 * 0.02562 * 7 6 5 37 37 H 1.08000 * 120.04482 * 180.27750 * 8 7 6 38 38 H 1.07994 * 120.04661 * 179.97438 * 12 9 8 39 39 H 1.07995 * 119.95188 * 179.97438 * 13 12 9 40 40 H 1.08000 * 119.99373 * 180.02562 * 14 4 3 41 41 H 1.07998 * 120.00775 * 180.27980 * 15 14 4 42 42 H 0.96996 * 119.99742 * 335.47912 * 17 16 2 43 43 H 0.96999 * 120.00538 * 0.02562 * 20 18 17 44 44 H 1.08998 * 109.47193 * 300.00428 * 23 21 20 45 45 H 1.09002 * 109.46957 * 60.00158 * 23 21 20 46 46 H 1.09001 * 109.46879 * 180.02562 * 23 21 20 47 47 H 0.96995 * 120.00371 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1959 0.0000 4 6 3.5850 1.1959 -0.0005 5 8 4.2645 2.3735 0.0000 6 6 4.8467 2.7737 -1.1589 7 6 4.8297 1.9365 -2.2683 8 6 5.4151 2.3408 -3.4475 9 6 6.0363 3.5905 -3.5246 10 6 6.6514 4.0123 -4.7469 11 7 7.1397 4.3444 -5.7178 12 6 6.0558 4.4271 -2.4051 13 6 5.4629 4.0175 -1.2314 14 6 4.2794 -0.0056 -0.0016 15 6 3.5899 -1.2016 0.0041 16 6 2.2013 -1.2022 -0.0005 17 7 1.5009 -2.4160 -0.0001 18 6 2.0835 -3.5303 -0.4851 19 8 3.1749 -3.4636 -1.0167 20 7 1.4563 -4.7187 -0.3807 21 6 2.0923 -5.9309 -0.9025 22 1 3.1711 -5.8645 -0.7621 23 6 1.7796 -6.0694 -2.3938 24 6 1.5628 -7.1335 -0.1644 25 1 0.8260 -7.0074 0.6150 26 6 2.0191 -8.3946 -0.4842 27 7 2.9161 -8.5482 -1.4337 28 14 1.3623 -9.8853 0.4301 29 1 0.3695 -9.4465 1.4435 30 1 0.7119 -10.8097 -0.5330 31 1 2.4839 -10.5845 1.1070 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3632 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5141 35 1 1.6578 2.1312 0.0008 36 1 4.3531 0.9694 -2.2067 37 1 5.3976 1.6915 -4.3103 38 1 6.5351 5.3933 -2.4604 39 1 5.4779 4.6631 -0.3658 40 1 5.3594 -0.0049 -0.0016 41 1 4.1304 -2.1366 0.0079 42 1 0.5968 -2.4541 0.3492 43 1 0.5854 -4.7719 0.0432 44 1 0.7007 -6.1359 -2.5342 45 1 2.1625 -5.1997 -2.9276 46 1 2.2524 -6.9716 -2.7818 47 1 3.2368 -9.4355 -1.6590 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158375856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:36 Heat of formation + Delta-G solvation = 25.989389 kcal Electronic energy + Delta-G solvation = -30782.632045 eV Core-core repulsion = 26510.394404 eV Total energy + Delta-G solvation = -4272.237641 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -41.31253 -40.30200 -38.98060 -37.90823 -36.42999 -35.12755 -34.29001 -32.70851 -32.50775 -31.57598 -31.01977 -29.56110 -28.33166 -26.99552 -25.33777 -24.43287 -23.53027 -22.82713 -21.80895 -21.07510 -19.99959 -19.27111 -18.63355 -18.44363 -17.66284 -16.87227 -16.30760 -15.95336 -15.29487 -15.07085 -14.97644 -14.86000 -14.48146 -14.28910 -14.20903 -14.01767 -13.91131 -13.88036 -13.74446 -13.43265 -13.16961 -13.12190 -12.77268 -12.52015 -12.48041 -12.27606 -12.16084 -11.95287 -11.82421 -11.36264 -11.17664 -11.10144 -11.06598 -10.84117 -10.41716 -10.31699 -10.21686 -9.54077 -9.52339 -9.13341 -8.90372 -8.69307 -8.64956 -8.19181 -7.79025 -6.20531 -4.30127 0.44471 0.88430 0.97030 1.21687 2.39503 2.61104 2.78645 3.01413 3.18519 3.27022 3.29197 3.44593 3.52168 3.61972 3.84536 4.25246 4.37202 4.46505 4.60453 4.70182 4.71833 4.78065 4.92378 5.00014 5.11406 5.12709 5.17124 5.35892 5.38219 5.49599 5.52081 5.59545 5.72949 5.86584 5.88401 5.92301 5.98318 6.17744 6.24872 6.33983 6.45253 6.69581 6.86971 6.89507 7.00319 7.10435 7.21399 7.31846 7.32616 7.53521 7.71593 7.87345 8.06078 8.59643 8.72313 9.06256 9.37900 10.85489 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.001841 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.887330 B =15206.177614 C =16511.872514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 C -0.093 4.093 4 C 0.039 3.961 5 O -0.248 6.248 6 C 0.158 3.842 7 C -0.197 4.197 8 C -0.027 4.027 9 C -0.074 4.074 10 C 0.260 3.740 11 N -0.427 5.427 12 C -0.033 4.033 13 C -0.152 4.152 14 C -0.111 4.111 15 C -0.117 4.117 16 C 0.196 3.804 17 N -0.690 5.690 18 C 0.691 3.309 19 O -0.578 6.578 20 N -0.715 5.715 21 C 0.279 3.721 22 H 0.051 0.949 23 C -0.148 4.148 24 C -0.535 4.535 25 H 0.062 0.938 26 C 0.066 3.934 27 N -0.882 5.882 28 Si 0.903 3.097 29 H -0.273 1.273 30 H -0.282 1.282 31 H -0.282 1.282 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.161 0.839 42 H 0.405 0.595 43 H 0.387 0.613 44 H 0.026 0.974 45 H 0.015 0.985 46 H 0.091 0.909 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 23.304 3.878 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.004 4.004 5 O -0.158 6.158 6 C 0.113 3.887 7 C -0.215 4.215 8 C -0.048 4.048 9 C -0.077 4.077 10 C -0.054 4.054 11 N -0.102 5.102 12 C -0.053 4.053 13 C -0.171 4.171 14 C -0.130 4.130 15 C -0.137 4.137 16 C 0.098 3.902 17 N -0.337 5.337 18 C 0.392 3.608 19 O -0.455 6.455 20 N -0.366 5.366 21 C 0.178 3.822 22 H 0.069 0.931 23 C -0.207 4.207 24 C -0.573 4.573 25 H 0.080 0.920 26 C -0.137 4.137 27 N -0.519 5.519 28 Si 0.731 3.269 29 H -0.198 1.198 30 H -0.208 1.208 31 H -0.208 1.208 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.178 0.822 42 H 0.240 0.760 43 H 0.219 0.781 44 H 0.045 0.955 45 H 0.034 0.966 46 H 0.110 0.890 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.398 23.624 1.954 23.708 hybrid contribution -1.404 -1.227 1.089 2.159 sum -1.802 22.397 3.043 22.675 Atomic orbital electron populations 1.20712 0.90479 1.03272 1.02485 1.19407 0.96243 0.90837 1.05714 1.20736 0.92076 0.97809 1.00548 1.18477 0.90207 0.83548 1.08167 1.84429 1.64304 1.36909 1.30196 1.19578 0.91235 0.92945 0.84956 1.21419 1.05461 1.01792 0.92876 1.21015 0.92521 0.93474 0.97751 1.15938 1.06055 0.96941 0.88793 1.25669 0.93280 0.93621 0.92874 1.81283 1.09927 1.08185 1.10839 1.20934 0.95481 0.98608 0.90296 1.20321 1.02577 0.94864 0.99301 1.21324 1.00614 0.91061 0.99993 1.21488 0.92670 0.99590 0.99964 1.17561 0.91387 0.84318 0.96949 1.43022 1.18626 1.06767 1.65247 1.16182 0.84648 0.80495 0.79503 1.90845 1.20563 1.84954 1.49178 1.45929 1.22419 1.06466 1.61792 1.18733 0.94444 0.78378 0.90655 0.93147 1.22110 0.99054 1.01287 0.98273 1.21218 1.25454 0.90786 1.19883 0.91987 1.24884 0.94764 0.98981 0.95073 1.69905 1.29255 1.23268 1.29479 0.86370 0.78770 0.82265 0.79542 1.19750 1.20841 1.20835 0.90954 0.90994 0.91407 0.84975 0.83767 0.84539 0.84285 0.83958 0.85022 0.82189 0.75984 0.78059 0.95476 0.96556 0.89012 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.44 36.01 0.34 -0.50 16 2 C -0.12 -1.22 5.89 -104.45 -0.62 -1.84 16 3 C -0.09 -0.91 9.63 -39.45 -0.38 -1.29 16 4 C 0.04 0.42 4.67 -39.20 -0.18 0.23 16 5 O -0.25 -2.52 9.97 -3.25 -0.03 -2.55 16 6 C 0.16 1.41 6.63 -39.02 -0.26 1.15 16 7 C -0.20 -1.79 8.91 -39.49 -0.35 -2.14 16 8 C -0.03 -0.22 9.75 -39.20 -0.38 -0.60 16 9 C -0.07 -0.59 5.74 -106.83 -0.61 -1.20 16 10 C 0.26 2.56 15.33 -22.46 -0.34 2.21 16 11 N -0.43 -5.23 18.54 41.85 0.78 -4.45 16 12 C -0.03 -0.21 9.75 -39.20 -0.38 -0.59 16 13 C -0.15 -1.05 9.97 -39.49 -0.39 -1.44 16 14 C -0.11 -1.30 8.38 -39.45 -0.33 -1.63 16 15 C -0.12 -1.64 8.71 -39.42 -0.34 -1.98 16 16 C 0.20 2.55 6.41 -83.61 -0.54 2.02 16 17 N -0.69 -9.29 4.99 -14.19 -0.07 -9.36 16 18 C 0.69 12.65 8.33 -86.92 -0.72 11.92 16 19 O -0.58 -12.61 13.17 5.29 0.07 -12.54 16 20 N -0.72 -13.64 5.07 -59.81 -0.30 -13.94 16 21 C 0.28 6.71 2.56 -69.08 -0.18 6.54 16 22 H 0.05 1.40 7.57 -51.93 -0.39 1.01 16 23 C -0.15 -3.53 9.26 37.16 0.34 -3.18 16 24 C -0.53 -13.48 8.73 -34.44 -0.30 -13.78 16 25 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 26 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 27 N -0.88 -23.99 11.32 55.43 0.63 -23.37 16 28 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 29 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 30 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 31 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.07 0.51 6.97 -51.93 -0.36 0.15 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.45 5.97 -52.49 -0.31 1.13 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.16 2.68 5.78 -52.49 -0.30 2.38 16 42 H 0.40 4.11 7.40 -40.82 -0.30 3.81 16 43 H 0.39 6.21 8.56 -40.82 -0.35 5.86 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 47 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -30.85 404.52 -9.27 -40.11 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.68 Total: 9.59 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -5.73 Total: -4.48 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 1.03 Total: -51.13 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.04 Total: -15.09 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.85 -9.27 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158375856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.103 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds