Wall clock time and date at job start Tue Mar 31 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38104 * 120.00974 * 2 1 4 4 C 1.38727 * 120.01022 * 180.02562 * 3 2 1 5 5 O 1.35955 * 119.98608 * 180.02562 * 4 3 2 6 6 C 1.35726 * 118.00160 * 255.25276 * 5 4 3 7 7 C 1.39002 * 119.90830 * 354.81667 * 6 5 4 8 8 C 1.37715 * 120.09197 * 179.76557 * 7 6 5 9 9 C 1.39769 * 119.90930 * 0.50980 * 8 7 6 10 10 C 1.43192 * 120.09326 * 179.72279 * 9 8 7 11 11 N 9.12655 * 128.10987 * 307.22718 * 2 1 3 12 12 C 1.39768 * 119.81593 * 359.74526 * 9 8 7 13 13 C 1.37726 * 119.90429 * 359.97438 * 12 9 8 14 14 C 1.38770 * 120.02650 * 0.02562 * 4 3 2 15 15 C 1.38058 * 120.00884 * 359.69928 * 14 4 3 16 16 C 1.38829 * 120.00516 * 180.02562 * 2 1 3 17 17 N 1.40137 * 120.00909 * 359.95212 * 16 2 1 18 18 C 1.34773 * 119.99755 * 155.47064 * 17 16 2 19 19 O 1.21587 * 120.00384 * 354.32159 * 18 17 16 20 20 N 1.34777 * 119.99550 * 174.31565 * 18 17 16 21 21 C 1.46503 * 119.99582 * 180.27783 * 20 18 17 22 22 H 1.08998 * 109.47389 * 34.72679 * 21 20 18 23 23 C 1.53002 * 109.47216 * 274.72371 * 21 20 18 24 24 C 1.50705 * 109.47165 * 154.72575 * 21 20 18 25 25 H 1.07998 * 119.99932 * 0.02562 * 24 21 20 26 26 C 1.37872 * 120.00266 * 180.02562 * 24 21 20 27 27 N 1.31519 * 120.00095 * 359.97438 * 26 24 21 28 28 Si 1.86801 * 120.00168 * 180.02562 * 26 24 21 29 29 H 1.48497 * 109.46869 * 359.97438 * 28 26 24 30 30 H 1.48502 * 109.46932 * 119.99933 * 28 26 24 31 31 H 1.48497 * 109.46949 * 239.99774 * 28 26 24 32 32 H 1.09000 * 109.46731 * 269.97917 * 1 2 3 33 33 H 1.08998 * 109.46461 * 29.97320 * 1 2 3 34 34 H 1.08991 * 109.47519 * 149.97613 * 1 2 3 35 35 H 1.07997 * 119.99627 * 0.04890 * 3 2 1 36 36 H 1.07996 * 119.95019 * 0.02562 * 7 6 5 37 37 H 1.08000 * 120.04482 * 180.27750 * 8 7 6 38 38 H 1.07994 * 120.04661 * 179.97438 * 12 9 8 39 39 H 1.07995 * 119.95188 * 179.97438 * 13 12 9 40 40 H 1.08000 * 119.99373 * 180.02562 * 14 4 3 41 41 H 1.07998 * 120.00775 * 180.27980 * 15 14 4 42 42 H 0.96996 * 119.99742 * 335.47912 * 17 16 2 43 43 H 0.96999 * 120.00538 * 0.02562 * 20 18 17 44 44 H 1.08998 * 109.47193 * 300.00428 * 23 21 20 45 45 H 1.09002 * 109.46957 * 60.00158 * 23 21 20 46 46 H 1.09001 * 109.46879 * 180.02562 * 23 21 20 47 47 H 0.96995 * 120.00371 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1959 0.0000 4 6 3.5850 1.1959 -0.0005 5 8 4.2645 2.3735 0.0000 6 6 4.8467 2.7737 -1.1589 7 6 4.8297 1.9365 -2.2683 8 6 5.4151 2.3408 -3.4475 9 6 6.0363 3.5905 -3.5246 10 6 6.6514 4.0123 -4.7469 11 7 7.1397 4.3444 -5.7178 12 6 6.0558 4.4271 -2.4051 13 6 5.4629 4.0175 -1.2314 14 6 4.2794 -0.0056 -0.0016 15 6 3.5899 -1.2016 0.0041 16 6 2.2013 -1.2022 -0.0005 17 7 1.5009 -2.4160 -0.0001 18 6 2.0835 -3.5303 -0.4851 19 8 3.1749 -3.4636 -1.0167 20 7 1.4563 -4.7187 -0.3807 21 6 2.0923 -5.9309 -0.9025 22 1 3.1711 -5.8645 -0.7621 23 6 1.7796 -6.0694 -2.3938 24 6 1.5628 -7.1335 -0.1644 25 1 0.8260 -7.0074 0.6150 26 6 2.0191 -8.3946 -0.4842 27 7 2.9161 -8.5482 -1.4337 28 14 1.3623 -9.8853 0.4301 29 1 0.3695 -9.4465 1.4435 30 1 0.7119 -10.8097 -0.5330 31 1 2.4839 -10.5845 1.1070 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3632 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5141 35 1 1.6578 2.1312 0.0008 36 1 4.3531 0.9694 -2.2067 37 1 5.3976 1.6915 -4.3103 38 1 6.5351 5.3933 -2.4604 39 1 5.4779 4.6631 -0.3658 40 1 5.3594 -0.0049 -0.0016 41 1 4.1304 -2.1366 0.0079 42 1 0.5968 -2.4541 0.3492 43 1 0.5854 -4.7719 0.0432 44 1 0.7007 -6.1359 -2.5342 45 1 2.1625 -5.1997 -2.9276 46 1 2.2524 -6.9716 -2.7818 47 1 3.2368 -9.4355 -1.6590 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158375856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:30 Heat of formation + Delta-G solvation = 9.125799 kcal Electronic energy + Delta-G solvation = -30783.363305 eV Core-core repulsion = 26510.394404 eV Total energy + Delta-G solvation = -4272.968901 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -42.17192 -41.44568 -39.89824 -38.87424 -37.28081 -36.80224 -35.54260 -34.30588 -33.57145 -32.22815 -31.79119 -31.00947 -29.53245 -27.81411 -27.32450 -25.28702 -24.35591 -23.71980 -23.06768 -22.15151 -21.57912 -19.96118 -19.86887 -19.42391 -18.84169 -17.89106 -17.63618 -17.13972 -16.91768 -16.30133 -15.95035 -15.69412 -15.64624 -15.30597 -15.18696 -14.89918 -14.84927 -14.67676 -14.58433 -14.52178 -14.39091 -14.13959 -13.94239 -13.77150 -13.53794 -13.19686 -13.06377 -12.97753 -12.91788 -12.84221 -12.70847 -12.67546 -12.27696 -12.11904 -12.03408 -11.95073 -11.44655 -11.08289 -10.96559 -10.61406 -10.13652 -9.85482 -9.79312 -9.39134 -8.85761 -8.17511 -6.34418 -0.23778 0.04366 0.27886 0.33231 1.45357 1.46313 1.57647 1.60962 1.68828 1.88021 1.94914 2.26681 2.42390 2.77230 2.84537 2.89566 3.13594 3.39171 3.74533 3.81127 3.87514 3.87870 4.05457 4.17824 4.28634 4.38596 4.44836 4.54224 4.66785 4.75091 4.86988 4.91778 4.92729 4.96626 4.97849 5.09820 5.11475 5.20554 5.23070 5.31002 5.33290 5.36388 5.42178 5.45107 5.60102 5.61613 5.67073 5.85383 5.88424 6.09724 6.23520 6.44296 6.52359 6.73615 7.19307 7.34220 7.63908 8.88996 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.001841 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.887330 B =15206.177614 C =16511.872514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.089 4.089 4 C 0.048 3.952 5 O -0.250 6.250 6 C 0.146 3.854 7 C -0.207 4.207 8 C -0.029 4.029 9 C -0.078 4.078 10 C 0.284 3.716 11 N -0.472 5.472 12 C -0.018 4.018 13 C -0.143 4.143 14 C -0.116 4.116 15 C -0.137 4.137 16 C 0.168 3.832 17 N -0.670 5.670 18 C 0.692 3.308 19 O -0.618 6.618 20 N -0.712 5.712 21 C 0.288 3.712 22 H 0.001 0.999 23 C -0.134 4.134 24 C -0.544 4.544 25 H 0.075 0.925 26 C 0.014 3.986 27 N -0.917 5.917 28 Si 0.972 3.028 29 H -0.259 1.259 30 H -0.280 1.280 31 H -0.286 1.286 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.422 0.578 43 H 0.404 0.596 44 H 0.041 0.959 45 H 0.012 0.988 46 H 0.066 0.934 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 25.798 5.446 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 C -0.108 4.108 4 C 0.005 3.995 5 O -0.162 6.162 6 C 0.102 3.898 7 C -0.226 4.226 8 C -0.050 4.050 9 C -0.082 4.082 10 C -0.030 4.030 11 N -0.149 5.149 12 C -0.038 4.038 13 C -0.161 4.161 14 C -0.135 4.135 15 C -0.158 4.158 16 C 0.072 3.928 17 N -0.318 5.318 18 C 0.392 3.608 19 O -0.499 6.499 20 N -0.364 5.364 21 C 0.185 3.815 22 H 0.019 0.981 23 C -0.193 4.193 24 C -0.582 4.582 25 H 0.093 0.907 26 C -0.186 4.186 27 N -0.555 5.555 28 Si 0.797 3.203 29 H -0.183 1.183 30 H -0.206 1.206 31 H -0.212 1.212 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.180 0.820 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.186 0.814 39 H 0.185 0.815 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.261 0.739 43 H 0.239 0.761 44 H 0.060 0.940 45 H 0.031 0.969 46 H 0.085 0.915 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.657 26.181 3.556 26.554 hybrid contribution -0.643 -1.826 0.615 2.032 sum -3.299 24.354 4.172 24.928 Atomic orbital electron populations 1.20835 0.87900 1.04244 1.04054 1.19701 0.97933 0.89579 1.03305 1.21071 0.91681 0.98773 0.99251 1.18534 0.90782 0.83370 1.06771 1.84400 1.64597 1.36246 1.30910 1.19790 0.91872 0.93802 0.84368 1.21314 1.06288 1.01478 0.93528 1.21056 0.92405 0.93805 0.97701 1.15996 1.06342 0.97177 0.88685 1.25847 0.92183 0.92371 0.92581 1.81308 1.11642 1.09785 1.12156 1.21241 0.94220 0.99209 0.89137 1.20597 1.01252 0.94094 1.00182 1.21287 1.00806 0.91013 1.00357 1.21235 0.93541 0.98950 1.02101 1.17739 0.91132 0.84863 0.99106 1.42601 1.19160 1.05587 1.64484 1.16256 0.84071 0.81221 0.79229 1.90836 1.22474 1.85714 1.50879 1.45473 1.23054 1.05615 1.62290 1.18269 0.92027 0.80219 0.91014 0.98078 1.21923 0.99519 0.99813 0.98089 1.21550 1.25433 0.91153 1.20050 0.90671 1.25783 0.94951 1.02048 0.95837 1.70057 1.30578 1.23859 1.31016 0.85290 0.78125 0.78437 0.78418 1.18251 1.20565 1.21188 0.88935 0.89037 0.91473 0.82014 0.85255 0.84161 0.81386 0.81506 0.84844 0.85827 0.73855 0.76052 0.94020 0.96939 0.91497 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.44 71.24 0.67 -0.63 16 2 C -0.10 -1.89 5.89 -19.75 -0.12 -2.01 16 3 C -0.09 -1.53 9.63 22.35 0.22 -1.31 16 4 C 0.05 0.98 4.67 22.51 0.11 1.09 16 5 O -0.25 -4.60 9.97 -34.55 -0.34 -4.94 16 6 C 0.15 2.34 6.63 22.63 0.15 2.49 16 7 C -0.21 -3.64 8.91 22.33 0.20 -3.44 16 8 C -0.03 -0.46 9.75 22.52 0.22 -0.24 16 9 C -0.08 -1.11 5.74 -21.30 -0.12 -1.23 16 10 C 0.28 5.29 15.33 88.33 1.35 6.64 16 11 N -0.47 -11.40 18.54 19.01 0.35 -11.05 16 12 C -0.02 -0.17 9.75 22.52 0.22 0.05 16 13 C -0.14 -1.52 9.97 22.33 0.22 -1.29 16 14 C -0.12 -2.81 8.38 22.35 0.19 -2.62 16 15 C -0.14 -4.10 8.71 22.38 0.19 -3.90 16 16 C 0.17 4.38 6.41 38.10 0.24 4.62 16 17 N -0.67 -17.96 4.99 -317.06 -1.58 -19.54 16 18 C 0.69 26.18 8.33 179.06 1.49 27.68 16 19 O -0.62 -28.85 13.17 -3.99 -0.05 -28.91 16 20 N -0.71 -27.61 5.07 -461.40 -2.34 -29.95 16 21 C 0.29 14.35 2.56 44.25 0.11 14.47 16 22 H 0.00 0.08 7.57 -2.39 -0.02 0.06 16 23 C -0.13 -6.60 9.26 71.98 0.67 -5.93 16 24 C -0.54 -27.60 8.73 25.60 0.22 -27.37 16 25 H 0.08 3.54 7.74 -2.91 -0.02 3.51 16 26 C 0.01 0.73 5.30 84.65 0.45 1.18 16 27 N -0.92 -51.39 11.32 21.45 0.24 -51.15 16 28 Si 0.97 40.81 29.54 68.60 2.03 42.84 16 29 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 30 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 31 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 34 H 0.07 0.81 6.97 -2.39 -0.02 0.79 16 35 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.13 2.67 5.97 -2.91 -0.02 2.65 16 37 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 39 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 40 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 41 H 0.12 4.61 5.78 -2.91 -0.02 4.60 16 42 H 0.42 7.96 7.40 -92.71 -0.69 7.28 16 43 H 0.40 12.69 8.56 -92.71 -0.79 11.89 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 47 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -70.72 404.52 4.56 -66.16 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.43 Total: 28.32 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.69 Total: 8.22 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -3.33 Total: -111.69 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.40 Total: -33.85 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -70.72 4.56 -66.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158375856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.287 kcal (2) G-P(sol) polarization free energy of solvation -70.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds