Wall clock time and date at job start Tue Mar 31 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47019 * 299.99527 * 3 2 1 6 6 H 1.48501 * 109.47562 * 59.99615 * 3 2 1 7 7 C 1.37880 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99505 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46768 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47165 * 55.00602 * 10 9 7 12 12 N 1.46497 * 109.47593 * 294.99865 * 10 9 7 13 13 C 1.38321 * 120.00482 * 154.99857 * 12 10 9 14 14 N 1.32542 * 120.63433 * 0.02562 * 13 12 10 15 15 C 1.32091 * 121.14020 * 180.02562 * 14 13 12 16 16 N 1.31301 * 122.27680 * 0.02562 * 15 14 13 17 17 C 1.34086 * 120.87722 * 359.97438 * 16 15 14 18 18 S 1.75392 * 131.30136 * 180.02562 * 17 16 15 19 19 C 1.76332 * 92.45678 * 179.97438 * 18 17 16 20 20 C 1.32536 * 111.35780 * 0.05088 * 19 18 17 21 21 C 1.39091 * 119.09645 * 359.71645 * 17 16 15 22 22 C 1.52873 * 110.20183 * 179.97438 * 20 19 18 23 23 C 1.54130 * 104.89872 * 17.58563 * 22 20 19 24 24 C 1.52610 * 138.12391 * 180.02562 * 19 18 17 25 25 C 1.50706 * 109.47046 * 174.99935 * 10 9 7 26 26 C 1.38234 * 120.00196 * 260.00428 * 25 10 9 27 27 C 1.38235 * 119.99814 * 179.97438 * 26 25 10 28 28 C 1.38230 * 120.00326 * 359.97438 * 27 26 25 29 29 C 1.38243 * 120.00092 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99618 * 359.97438 * 29 28 27 31 31 H 0.96996 * 119.99830 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.47170 * 59.99848 * 9 7 2 33 33 H 1.08993 * 109.47128 * 299.99985 * 9 7 2 34 34 H 0.97006 * 119.99969 * 335.00641 * 12 10 9 35 35 H 1.07996 * 118.85948 * 179.97438 * 15 14 13 36 36 H 1.08996 * 110.35796 * 136.44026 * 22 20 19 37 37 H 1.08999 * 110.35715 * 258.62648 * 22 20 19 38 38 H 1.09007 * 111.01074 * 91.47901 * 23 22 20 39 39 H 1.09000 * 111.01723 * 215.31096 * 23 22 20 40 40 H 1.08995 * 110.36502 * 281.31243 * 24 19 18 41 41 H 1.08998 * 110.36105 * 43.63013 * 24 19 18 42 42 H 1.08000 * 119.99516 * 0.24808 * 26 25 10 43 43 H 1.08000 * 119.99297 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00350 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00235 * 179.97438 * 29 28 27 46 46 H 1.08005 * 119.99804 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0063 -3.6540 -1.2512 13 6 4.2632 -4.2293 -1.3003 14 7 4.7910 -4.7919 -0.2224 15 6 5.9906 -5.3437 -0.2579 16 7 6.7202 -5.3659 -1.3493 17 6 6.2702 -4.8217 -2.4891 18 16 6.9989 -4.6981 -4.0797 19 6 5.5997 -3.8507 -4.7382 20 6 4.6619 -3.6794 -3.8175 21 6 5.0099 -4.2335 -2.5063 22 6 3.4633 -2.9428 -4.4157 23 6 3.6288 -3.0896 -5.9410 24 6 5.1563 -3.2542 -6.0710 25 6 1.4959 -4.9637 0.1244 26 6 1.4100 -5.5980 1.3496 27 6 0.7222 -6.7917 1.4632 28 6 0.1197 -7.3508 0.3518 29 6 0.2047 -6.7160 -0.8733 30 6 0.8916 -5.5218 -0.9867 31 1 -0.4850 0.8400 -0.0004 32 1 0.6246 -2.5571 -0.8897 33 1 0.6240 -2.5567 0.8902 34 1 2.6288 -3.2451 -2.0457 35 1 6.3853 -5.7914 0.6422 36 1 2.5321 -3.4058 -4.0891 37 1 3.4834 -1.8911 -4.1301 38 1 3.1075 -3.9741 -6.3074 39 1 3.2863 -2.1940 -6.4594 40 1 5.6302 -2.2856 -6.2295 41 1 5.3963 -3.9333 -6.8891 42 1 1.8766 -5.1587 2.2189 43 1 0.6555 -7.2874 2.4204 44 1 -0.4173 -8.2836 0.4405 45 1 -0.2656 -7.1530 -1.7417 46 1 0.9583 -5.0260 -1.9439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164328168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:16 Heat of formation + Delta-G solvation = 88.941428 kcal Electronic energy + Delta-G solvation = -30214.504183 eV Core-core repulsion = 26387.749218 eV Total energy + Delta-G solvation = -3826.754965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.126 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -40.81551 -39.08621 -38.50927 -36.44384 -33.53677 -33.44037 -32.27315 -30.73250 -30.42061 -28.99754 -28.26137 -27.70615 -25.21827 -23.85681 -23.36687 -22.29746 -22.00305 -21.08672 -20.11613 -19.28709 -18.27197 -17.24481 -16.86166 -16.44876 -16.19032 -15.76063 -15.43043 -15.02144 -14.81242 -14.63591 -14.55004 -14.18212 -13.61079 -13.24631 -13.00536 -12.99389 -12.87133 -12.65242 -12.57654 -12.34010 -12.17369 -11.86069 -11.64726 -11.45413 -11.28242 -11.18566 -10.98714 -10.87733 -10.80113 -10.75965 -10.66430 -10.53981 -10.36911 -9.81739 -9.34863 -8.99779 -8.88746 -8.58398 -8.52626 -8.27752 -8.22664 -7.44311 -6.16251 -4.20057 0.75899 1.18396 1.47574 1.72159 1.75334 1.97547 2.26613 3.20812 3.30033 3.34579 3.44591 4.08292 4.17502 4.25685 4.33886 4.41474 4.49636 4.75500 4.84916 4.88722 5.09053 5.20505 5.21016 5.22672 5.30578 5.38116 5.43732 5.47769 5.57387 5.62557 5.76561 5.82831 5.84723 5.88942 6.02034 6.05046 6.10917 6.27479 6.31647 6.35302 6.41548 6.49931 6.79199 6.80444 6.97508 7.00419 7.26915 7.35386 7.39924 7.65905 7.79109 7.87392 8.16885 8.55119 8.85873 9.45644 10.94106 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.006359 B = 0.004580 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4402.243337 B = 6111.894080 C = 8324.824157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.022 3.978 10 C 0.187 3.813 11 H 0.095 0.905 12 N -0.661 5.661 13 C 0.496 3.504 14 N -0.582 5.582 15 C 0.357 3.643 16 N -0.550 5.550 17 C 0.123 3.877 18 S 0.161 5.839 19 C -0.221 4.221 20 C -0.068 4.068 21 C -0.224 4.224 22 C -0.070 4.070 23 C -0.115 4.115 24 C -0.037 4.037 25 C -0.070 4.070 26 C -0.104 4.104 27 C -0.122 4.122 28 C -0.134 4.134 29 C -0.124 4.124 30 C -0.109 4.109 31 H 0.262 0.738 32 H 0.023 0.977 33 H 0.038 0.962 34 H 0.412 0.588 35 H 0.196 0.804 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 -11.072 -8.550 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.083 3.917 11 H 0.113 0.887 12 N -0.287 5.287 13 C 0.243 3.757 14 N -0.310 5.310 15 C 0.064 3.936 16 N -0.274 5.274 17 C -0.126 4.126 18 S 0.421 5.579 19 C -0.337 4.337 20 C -0.080 4.080 21 C -0.242 4.242 22 C -0.109 4.109 23 C -0.154 4.154 24 C -0.077 4.077 25 C -0.072 4.072 26 C -0.122 4.122 27 C -0.141 4.141 28 C -0.152 4.152 29 C -0.143 4.143 30 C -0.127 4.127 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.251 0.749 35 H 0.213 0.787 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.710 -11.789 -8.215 16.307 hybrid contribution -1.332 1.869 -0.167 2.301 sum 6.378 -9.921 -8.381 14.469 Atomic orbital electron populations 1.69963 1.05980 1.26778 1.50126 1.24967 0.94778 0.99189 0.95025 0.86573 0.80197 0.83783 0.77741 1.19770 1.20941 1.20870 1.21138 0.93041 0.90319 1.51433 0.92435 1.19423 0.93211 0.90147 0.98724 1.20426 0.93423 0.92125 0.85750 0.88716 1.44970 1.12808 1.56246 1.14721 1.18536 0.85638 0.84795 0.86770 1.67944 1.15507 1.19043 1.28470 1.24552 0.84889 0.89403 0.94792 1.68129 1.36747 1.24425 0.98085 1.23200 0.93382 0.97148 0.98851 1.83725 1.16864 1.59579 0.97732 1.25281 0.98454 1.08368 1.01615 1.20963 0.97844 0.98709 0.90488 1.19595 0.98221 1.11732 0.94624 1.21231 0.94790 1.00467 0.94453 1.22282 0.94927 1.02816 0.95375 1.20875 0.95493 1.00013 0.91327 1.20499 0.96846 0.96432 0.93397 1.20988 0.98993 0.94942 0.97311 1.21045 0.98516 0.96243 0.98255 1.21000 1.00970 1.00011 0.93202 1.21030 0.99896 0.95934 0.97398 1.20886 0.97696 0.95708 0.98403 0.92850 0.95831 0.94380 0.74914 0.78715 0.90525 0.89035 0.90574 0.89745 0.90009 0.90731 0.86034 0.86569 0.86847 0.86809 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -13.44 8.84 -34.44 -0.30 -13.75 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.52 4.49 -27.88 -0.13 0.39 16 10 C 0.19 3.62 2.14 -69.08 -0.15 3.47 16 11 H 0.09 1.96 7.43 -51.93 -0.39 1.57 16 12 N -0.66 -11.96 4.16 -54.45 -0.23 -12.19 16 13 C 0.50 8.96 7.55 -154.52 -1.17 7.80 16 14 N -0.58 -10.30 9.32 -13.42 -0.13 -10.42 16 15 C 0.36 5.61 12.26 -92.32 -1.13 4.48 16 16 N -0.55 -9.18 10.49 -13.53 -0.14 -9.32 16 17 C 0.12 2.05 7.67 -16.25 -0.12 1.92 16 18 S 0.16 2.16 23.23 -107.50 -2.50 -0.33 16 19 C -0.22 -2.89 7.24 -35.27 -0.26 -3.14 16 20 C -0.07 -1.00 6.47 -102.10 -0.66 -1.66 16 21 C -0.22 -3.80 6.07 -104.86 -0.64 -4.44 16 22 C -0.07 -0.86 5.80 -26.21 -0.15 -1.02 16 23 C -0.12 -1.07 7.13 -25.52 -0.18 -1.25 16 24 C -0.04 -0.36 6.82 -26.31 -0.18 -0.54 16 25 C -0.07 -1.24 4.93 -104.62 -0.52 -1.76 16 26 C -0.10 -1.69 9.67 -39.58 -0.38 -2.07 16 27 C -0.12 -1.75 10.05 -39.59 -0.40 -2.14 16 28 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 29 C -0.12 -1.82 10.05 -39.58 -0.40 -2.21 16 30 C -0.11 -1.79 9.32 -39.58 -0.37 -2.16 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.41 7.20 6.37 -40.82 -0.26 6.94 16 35 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 36 H 0.08 0.93 7.31 -51.93 -0.38 0.55 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.12 1.86 8.04 -52.49 -0.42 1.44 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.11 1.79 7.72 -52.48 -0.41 1.38 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -30.25 395.49 -14.98 -45.24 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.04 Total: 8.26 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -7.62 Total: -18.76 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.24 Total: -56.12 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.50 Total: -0.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.25 -14.98 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164328168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.181 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds