Wall clock time and date at job start Tue Mar 31 2020 06:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86801 * 120.00167 * 2 1 4 4 H 1.48503 * 109.46855 * 239.99500 * 3 2 1 5 5 H 1.48499 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47157 * 119.99915 * 3 2 1 7 7 C 1.40052 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99599 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00460 * 5.05643 * 9 7 2 11 11 N 1.34783 * 119.99843 * 185.05803 * 9 7 2 12 12 C 1.47230 * 121.33743 * 185.01209 * 11 9 7 13 13 C 1.52792 * 107.88899 * 115.78722 * 12 11 9 14 14 C 1.50590 * 110.85878 * 47.44020 * 13 12 11 15 15 C 1.37590 * 122.89709 * 339.99444 * 14 13 12 16 16 C 1.38855 * 119.88913 * 180.88798 * 15 14 13 17 17 C 1.38042 * 120.65503 * 359.56337 * 16 15 14 18 18 C 1.38095 * 119.79606 * 359.82841 * 17 16 15 19 19 C 1.38591 * 119.74452 * 0.74914 * 18 17 16 20 20 N 1.39934 * 119.78072 * 179.54326 * 19 18 17 21 21 C 1.34780 * 120.00208 * 24.90151 * 20 19 18 22 22 O 1.21589 * 119.99925 * 5.64123 * 21 20 19 23 23 N 1.34775 * 120.00188 * 185.64688 * 21 20 19 24 24 C 1.39938 * 120.00200 * 184.73762 * 23 21 20 25 25 C 1.38868 * 120.06892 * 144.93901 * 24 23 21 26 26 C 1.38113 * 119.92689 * 180.25711 * 25 24 23 27 27 C 1.38285 * 120.06852 * 359.47007 * 26 25 24 28 28 C 1.38272 * 120.14248 * 0.50822 * 27 26 25 29 29 C 1.38119 * 120.06881 * 359.76728 * 28 27 26 30 30 C 1.46684 * 121.33686 * 5.03929 * 11 9 7 31 31 H 0.97000 * 119.99764 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.77950 * 356.18859 * 12 11 9 33 33 H 1.09005 * 109.81982 * 235.40787 * 12 11 9 34 34 H 1.08999 * 109.20211 * 287.08261 * 13 12 11 35 35 H 1.09000 * 109.15988 * 167.76910 * 13 12 11 36 36 H 1.08005 * 119.66930 * 179.58577 * 16 15 14 37 37 H 1.08006 * 120.09625 * 180.12778 * 17 16 15 38 38 H 1.08000 * 120.12598 * 180.50380 * 18 17 16 39 39 H 0.97001 * 120.00359 * 204.90263 * 20 19 18 40 40 H 0.97000 * 119.99736 * 4.73975 * 23 21 20 41 41 H 1.07998 * 120.03789 * 359.97438 * 25 24 23 42 42 H 1.08004 * 119.96335 * 179.69546 * 26 25 24 43 43 H 1.08000 * 119.92405 * 180.25795 * 27 26 25 44 44 H 1.07997 * 119.96739 * 179.74906 * 28 27 26 45 45 H 1.07995 * 120.03292 * 179.97438 * 29 28 27 46 46 H 1.09001 * 109.43562 * 344.40961 * 30 11 9 47 47 H 1.08996 * 109.43397 * 104.27602 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6962 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0617 -2.4826 -0.0928 11 7 1.9449 -3.6455 0.1040 12 6 1.2512 -4.9397 -0.0022 13 6 1.7786 -5.6543 -1.2455 14 6 3.2833 -5.6143 -1.2891 15 6 4.0275 -4.7005 -0.5791 16 6 5.4124 -4.7081 -0.6798 17 6 6.0547 -5.6313 -1.4803 18 6 5.3154 -6.5597 -2.1863 19 6 3.9323 -6.5481 -2.0981 20 7 3.1820 -7.4824 -2.8207 21 6 3.7346 -8.6583 -3.1792 22 8 4.8482 -8.9509 -2.7884 23 7 3.0529 -9.5097 -3.9710 24 6 3.5837 -10.7713 -4.2624 25 6 2.7403 -11.8657 -4.4019 26 6 3.2678 -13.1105 -4.6843 27 6 4.6332 -13.2656 -4.8390 28 6 5.4756 -12.1777 -4.7012 29 6 4.9548 -10.9313 -4.4132 30 6 3.3944 -3.6747 0.3274 31 1 -0.4850 0.8401 -0.0004 32 1 0.1779 -4.7761 -0.0983 33 1 1.4546 -5.5418 0.8834 34 1 1.3810 -5.1662 -2.1353 35 1 1.4480 -6.6928 -1.2285 36 1 5.9927 -3.9849 -0.1260 37 1 7.1325 -5.6304 -1.5504 38 1 5.8129 -7.2895 -2.8078 39 1 2.2641 -7.2839 -3.0636 40 1 2.1944 -9.2479 -4.3388 41 1 1.6736 -11.7444 -4.2851 42 1 2.6128 -13.9630 -4.7880 43 1 5.0427 -14.2392 -5.0639 44 1 6.5418 -12.3029 -4.8187 45 1 5.6133 -10.0822 -4.3054 46 1 3.8144 -2.6921 0.1125 47 1 3.5959 -3.9352 1.3664 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170598970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:01 Heat of formation + Delta-G solvation = 7.830199 kcal Electronic energy + Delta-G solvation = -31597.373795 eV Core-core repulsion = 27324.348712 eV Total energy + Delta-G solvation = -4273.025082 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.34491 -39.91274 -38.80518 -37.42684 -35.32323 -35.06964 -34.67497 -32.55266 -31.82707 -31.18585 -30.52701 -29.79822 -28.31199 -26.39231 -24.84865 -23.75614 -23.36101 -22.99002 -21.78060 -21.00747 -20.45319 -18.97620 -18.50947 -18.20848 -16.93109 -16.63429 -16.41584 -15.77706 -15.69501 -15.50922 -15.19649 -14.89733 -14.71833 -14.33946 -14.27993 -14.20117 -13.67448 -13.60733 -13.40527 -13.28041 -13.03923 -12.73753 -12.39799 -12.09817 -11.92488 -11.83457 -11.67486 -11.57426 -11.39845 -11.20007 -11.00035 -10.90427 -10.70097 -10.50713 -10.38899 -10.26975 -10.09590 -9.95889 -9.20233 -8.89460 -8.50788 -8.28516 -7.86397 -7.66392 -7.31835 -6.24798 -4.70085 0.97429 1.13006 1.49475 1.64347 2.19120 2.79134 3.12932 3.18256 3.19593 3.54474 3.73824 3.99642 4.04202 4.45829 4.50865 4.59711 4.67184 4.87874 4.96158 5.00811 5.11030 5.19887 5.27613 5.30621 5.37308 5.47720 5.55957 5.63240 5.70842 5.77218 5.81488 5.90636 5.96266 6.02379 6.10955 6.18775 6.21413 6.24097 6.29233 6.34392 6.42981 6.48201 6.57676 6.70769 6.74303 6.78227 6.88373 7.23753 7.40745 7.50391 7.52027 8.05646 8.11930 8.28999 8.97078 9.36341 10.51275 10.69748 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.001957 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.489572 B =14306.557263 C =15146.845080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.563 3.437 10 O -0.577 6.577 11 N -0.642 5.642 12 C 0.122 3.878 13 C -0.096 4.096 14 C -0.090 4.090 15 C -0.061 4.061 16 C -0.134 4.134 17 C -0.105 4.105 18 C -0.138 4.138 19 C 0.154 3.846 20 N -0.673 5.673 21 C 0.704 3.296 22 O -0.554 6.554 23 N -0.685 5.685 24 C 0.164 3.836 25 C -0.147 4.147 26 C -0.102 4.102 27 C -0.138 4.138 28 C -0.102 4.102 29 C -0.119 4.119 30 C 0.160 3.840 31 H 0.269 0.731 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.408 0.592 40 H 0.409 0.591 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.141 0.859 46 H 0.105 0.895 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.875 -21.198 -9.221 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.090 0.910 9 C 0.370 3.630 10 O -0.459 6.459 11 N -0.380 5.380 12 C -0.002 4.002 13 C -0.134 4.134 14 C -0.093 4.093 15 C -0.062 4.062 16 C -0.153 4.153 17 C -0.124 4.124 18 C -0.158 4.158 19 C 0.060 3.940 20 N -0.319 5.319 21 C 0.406 3.594 22 O -0.430 6.430 23 N -0.333 5.333 24 C 0.069 3.931 25 C -0.168 4.168 26 C -0.121 4.121 27 C -0.157 4.157 28 C -0.121 4.121 29 C -0.140 4.140 30 C 0.035 3.965 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.244 0.756 40 H 0.244 0.756 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.159 0.841 46 H 0.123 0.877 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.949 -21.295 -8.919 24.761 hybrid contribution -0.349 0.905 -0.321 1.022 sum 8.601 -20.390 -9.240 23.982 Atomic orbital electron populations 1.69994 1.07074 1.27495 1.35013 1.25718 0.94624 1.00307 0.92532 0.86451 0.79886 0.81036 0.79547 1.19205 1.20535 1.19166 1.20917 0.93539 0.89192 1.54368 0.90964 1.18203 0.86808 0.81945 0.76093 1.90592 1.14184 1.85922 1.55208 1.48195 1.05897 1.05334 1.78556 1.21067 0.98957 0.85661 0.94552 1.20788 0.91095 1.00142 1.01367 1.19193 0.95725 0.96840 0.97540 1.20011 0.93282 0.95938 0.96985 1.21064 0.93680 0.99904 1.00683 1.20877 0.99491 0.94925 0.97079 1.21190 0.91955 1.00395 1.02268 1.17509 0.90816 0.90813 0.94842 1.42574 1.16767 1.15561 1.57033 1.15855 0.84564 0.79943 0.79081 1.90903 1.18238 1.75355 1.58482 1.42595 1.24684 1.14756 1.51220 1.17513 0.92975 0.83422 0.99201 1.20899 0.99561 0.91693 1.04636 1.20925 0.95379 0.96470 0.99335 1.21152 0.93641 0.98970 1.01946 1.21091 0.99965 0.92305 0.98732 1.21372 0.94102 0.98963 0.99525 1.20307 0.82743 0.97852 0.95555 0.91977 0.89217 0.93291 0.90605 0.91554 0.85887 0.86020 0.84054 0.75556 0.75577 0.85721 0.85709 0.86051 0.85734 0.84088 0.87733 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.49 11.84 55.55 0.66 -21.83 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.66 29.56 -169.99 -5.02 14.64 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.54 -14.85 8.88 -35.63 -0.32 -15.17 16 8 H 0.07 1.79 5.75 -52.49 -0.30 1.49 16 9 C 0.56 15.63 7.64 -12.98 -0.10 15.53 16 10 O -0.58 -18.17 14.53 5.20 0.08 -18.10 16 11 N -0.64 -14.29 2.93 -176.04 -0.52 -14.81 16 12 C 0.12 2.30 6.44 -3.75 -0.02 2.28 16 13 C -0.10 -1.48 4.99 -28.04 -0.14 -1.62 16 14 C -0.09 -1.44 5.78 -104.42 -0.60 -2.04 16 15 C -0.06 -1.00 5.82 -104.57 -0.61 -1.61 16 16 C -0.13 -1.93 9.62 -39.42 -0.38 -2.31 16 17 C -0.10 -1.43 10.04 -39.71 -0.40 -1.83 16 18 C -0.14 -2.01 8.70 -39.50 -0.34 -2.35 16 19 C 0.15 2.24 6.40 -83.54 -0.53 1.71 16 20 N -0.67 -7.79 4.93 -14.12 -0.07 -7.86 16 21 C 0.70 8.45 8.20 -86.92 -0.71 7.74 16 22 O -0.55 -8.29 10.92 5.29 0.06 -8.23 16 23 N -0.69 -6.13 5.34 -14.23 -0.08 -6.20 16 24 C 0.16 1.60 6.30 -83.69 -0.53 1.07 16 25 C -0.15 -1.17 9.97 -39.39 -0.39 -1.56 16 26 C -0.10 -0.75 10.04 -39.61 -0.40 -1.14 16 27 C -0.14 -1.04 10.04 -39.55 -0.40 -1.44 16 28 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 29 C -0.12 -1.26 8.70 -39.39 -0.34 -1.61 16 30 C 0.16 2.97 6.10 -5.03 -0.03 2.94 16 31 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 32 H 0.09 1.85 7.07 -51.93 -0.37 1.49 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.83 7.29 -51.93 -0.38 0.45 16 36 H 0.12 1.51 8.05 -52.48 -0.42 1.09 16 37 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.14 2.08 5.76 -52.49 -0.30 1.78 16 39 H 0.41 3.68 7.42 -40.82 -0.30 3.38 16 40 H 0.41 2.33 8.85 -40.82 -0.36 1.97 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.14 1.69 6.22 -52.49 -0.33 1.36 16 46 H 0.10 2.00 5.51 -51.93 -0.29 1.72 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -36.15 385.52 -11.39 -47.54 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.57 Total: 9.45 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -6.74 Total: -0.40 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.00 Total: -50.71 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: 0.13 Total: -26.33 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.15 -11.39 -47.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170598970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.373 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds