Wall clock time and date at job start Tue Mar 31 2020 05:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09007 * 109.46763 * 2 1 4 4 C 1.50698 * 109.47073 * 119.99726 * 2 1 3 5 5 O 1.21274 * 119.99927 * 86.65037 * 4 2 1 6 6 N 1.34778 * 120.00111 * 266.65007 * 4 2 1 7 7 C 1.46503 * 119.99877 * 4.64498 * 6 4 2 8 8 C 1.50700 * 109.47612 * 85.94925 * 7 6 4 9 9 H 1.08006 * 119.99493 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00332 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00062 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47152 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46714 * 120.00473 * 12 10 8 15 15 H 1.48498 * 109.47346 * 240.00146 * 12 10 8 16 16 C 1.46494 * 120.00016 * 184.63687 * 6 4 2 17 17 C 1.50702 * 109.46961 * 90.00380 * 16 6 4 18 18 C 1.38675 * 120.41656 * 269.72204 * 17 16 6 19 19 C 1.38631 * 118.41947 * 179.78014 * 18 17 16 20 20 C 1.38237 * 119.15977 * 0.51490 * 19 18 17 21 21 N 1.31851 * 120.75882 * 359.72577 * 20 19 18 22 22 C 1.31887 * 121.73368 * 359.97438 * 21 20 19 23 23 N 1.46496 * 109.47084 * 239.99728 * 2 1 3 24 24 C 1.36034 * 126.35141 * 299.97488 * 23 2 1 25 25 N 1.30109 * 110.09912 * 180.02562 * 24 23 2 26 26 C 1.35782 * 109.64614 * 0.02562 * 25 24 23 27 27 C 1.39743 * 133.60509 * 180.02562 * 26 25 24 28 28 C 1.36605 * 119.88280 * 179.97438 * 27 26 25 29 29 C 1.38766 * 120.67667 * 359.97438 * 28 27 26 30 30 C 1.37862 * 120.44922 * 359.78258 * 29 28 27 31 31 C 1.38059 * 126.34342 * 119.99934 * 23 2 1 32 32 H 1.08997 * 109.46769 * 182.01350 * 1 2 3 33 33 H 1.09001 * 109.46818 * 302.01506 * 1 2 3 34 34 H 1.08997 * 109.46706 * 62.01061 * 1 2 3 35 35 H 1.09001 * 109.46628 * 205.94879 * 7 6 4 36 36 H 1.09001 * 109.46818 * 325.94302 * 7 6 4 37 37 H 0.97001 * 120.00284 * 179.97438 * 11 10 8 38 38 H 1.09007 * 109.47436 * 210.00184 * 16 6 4 39 39 H 1.08998 * 109.47251 * 330.00512 * 16 6 4 40 40 H 1.07995 * 120.79200 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.42201 * 180.21681 * 19 18 17 42 42 H 1.07991 * 119.61419 * 179.74515 * 20 19 18 43 43 H 1.07999 * 119.61711 * 180.02562 * 22 21 20 44 44 H 1.07996 * 124.95085 * 0.05767 * 24 23 2 45 45 H 1.07999 * 120.05832 * 359.94744 * 27 26 25 46 46 H 1.08007 * 119.65775 * 179.97438 * 28 27 26 47 47 H 1.08002 * 119.77965 * 180.02562 * 29 28 27 48 48 H 1.08000 * 120.15446 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1767 -1.9144 1.2191 6 7 2.3213 -0.0075 2.3436 7 6 2.0515 1.4316 2.3919 8 6 0.6238 1.6612 2.8165 9 1 -0.0182 0.8191 3.0295 10 6 0.1376 2.9459 2.9340 11 7 0.9195 3.9712 2.6750 12 14 -1.6322 3.2303 3.4596 13 1 -2.2967 1.9224 3.6891 14 1 -1.6543 4.0234 4.7149 15 1 -2.3524 3.9715 2.3931 16 6 2.9051 -0.6827 3.5053 17 6 4.4082 -0.6531 3.4006 18 6 5.0880 -1.6804 2.7639 19 6 6.4704 -1.6088 2.6873 20 6 7.1213 -0.5288 3.2537 21 7 6.4423 0.4277 3.8560 22 6 5.1267 0.3955 3.9425 23 7 2.0184 -0.6906 -1.1961 24 6 1.7711 -1.9839 -1.5379 25 7 2.3594 -2.2695 -2.6627 26 6 3.0255 -1.1780 -3.1195 27 6 3.8065 -0.9293 -4.2512 28 6 4.3583 0.3061 -4.4393 29 6 4.1516 1.3218 -3.5167 30 6 3.3805 1.1008 -2.3954 31 6 2.8153 -0.1497 -2.1852 32 1 -0.3633 -1.0270 0.0361 33 1 -0.3633 0.5448 0.8714 34 1 -0.3632 0.4823 -0.9075 35 1 2.7239 1.9035 3.1083 36 1 2.2110 1.8645 1.4043 37 1 0.5774 4.8751 2.7573 38 1 2.5942 -0.1718 4.4167 39 1 2.5632 -1.7173 3.5340 40 1 4.5530 -2.5144 2.3343 41 1 7.0320 -2.3894 2.1957 42 1 8.1982 -0.4677 3.2020 43 1 4.6050 1.1977 4.4432 44 1 1.1731 -2.6730 -0.9601 45 1 3.9739 -1.7125 -4.9757 46 1 4.9617 0.4942 -5.3152 47 1 4.5944 2.2932 -3.6800 48 1 3.2224 1.8948 -1.6806 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171473554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:24 Heat of formation + Delta-G solvation = 80.132916 kcal Electronic energy + Delta-G solvation = -33177.977750 eV Core-core repulsion = 29005.806611 eV Total energy + Delta-G solvation = -4172.171139 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.01674 -40.22000 -39.28681 -37.13105 -35.56348 -34.66643 -33.19954 -32.28976 -31.58638 -31.02494 -29.25362 -28.96463 -27.76549 -26.48627 -24.18131 -23.59778 -23.06651 -23.02528 -22.17867 -21.83498 -20.55485 -18.66669 -17.38173 -17.05496 -16.94203 -16.63331 -16.52766 -15.92870 -15.63913 -15.53440 -15.29160 -15.04413 -14.65665 -14.13129 -14.05074 -13.84197 -13.63163 -13.37381 -13.26778 -13.12150 -12.87154 -12.62668 -12.34899 -12.06394 -11.95279 -11.91215 -11.83382 -11.66741 -11.48528 -11.32588 -11.15933 -11.14486 -10.87652 -10.38805 -10.37432 -10.02225 -9.74170 -9.71258 -9.40610 -9.34147 -8.88883 -8.75996 -8.17306 -8.10731 -7.90806 -6.41170 -4.50589 1.14505 1.19382 1.41970 1.67937 2.57034 3.01595 3.04683 3.07504 3.18382 3.20570 3.59361 4.04115 4.06489 4.13537 4.48145 4.57100 4.78156 4.80537 4.89587 4.94829 5.00305 5.02693 5.11864 5.15101 5.17595 5.20365 5.28106 5.50107 5.57159 5.60877 5.70250 5.75969 5.79375 5.88814 5.93059 5.99018 6.00335 6.25225 6.29444 6.35180 6.46152 6.47316 6.63858 6.64795 6.70768 6.82826 6.84799 7.02442 7.14449 7.34475 7.52078 7.76446 7.89416 8.09100 8.10607 8.44189 8.60914 9.18431 10.65367 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.006346 B = 0.004613 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4411.040245 B = 6068.495349 C = 8588.456077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.126 0.874 4 C 0.515 3.485 5 O -0.559 6.559 6 N -0.581 5.581 7 C 0.233 3.767 8 C -0.546 4.546 9 H 0.066 0.934 10 C 0.071 3.929 11 N -0.884 5.884 12 Si 0.894 3.106 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.161 3.839 17 C -0.149 4.149 18 C -0.056 4.056 19 C -0.180 4.180 20 C 0.093 3.907 21 N -0.488 5.488 22 C 0.116 3.884 23 N -0.474 5.474 24 C 0.294 3.706 25 N -0.512 5.512 26 C 0.047 3.953 27 C -0.071 4.071 28 C -0.132 4.132 29 C -0.111 4.111 30 C -0.104 4.104 31 C 0.046 3.954 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.035 0.965 37 H 0.268 0.732 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.210 0.790 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.127 0.873 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -6.077 -5.025 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 H 0.144 0.856 4 C 0.301 3.699 5 O -0.439 6.439 6 N -0.311 5.311 7 C 0.114 3.886 8 C -0.584 4.584 9 H 0.084 0.916 10 C -0.134 4.134 11 N -0.521 5.521 12 Si 0.721 3.279 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.037 3.963 17 C -0.153 4.153 18 C -0.082 4.082 19 C -0.200 4.200 20 C -0.065 4.065 21 N -0.197 5.197 22 C -0.041 4.041 23 N -0.163 5.163 24 C 0.009 3.991 25 N -0.232 5.232 26 C -0.071 4.071 27 C -0.091 4.091 28 C -0.152 4.152 29 C -0.130 4.130 30 C -0.125 4.125 31 C -0.063 4.063 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.168 0.832 43 H 0.175 0.825 44 H 0.226 0.774 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.132 -6.469 -4.935 10.188 hybrid contribution -1.385 0.500 0.500 1.555 sum 4.747 -5.969 -4.435 8.822 Atomic orbital electron populations 1.22193 0.90386 1.03432 1.05634 1.21390 0.97700 0.97631 0.81351 0.85595 1.20272 0.77520 0.87265 0.84805 1.90608 1.55275 1.14131 1.83884 1.48207 1.58741 1.11947 1.12184 1.19598 0.97338 0.73108 0.98548 1.21436 0.96188 0.92587 1.48206 0.91558 1.24931 0.98119 0.95776 0.94587 1.69915 1.35978 0.98964 1.47212 0.86491 0.84130 0.78632 0.78627 1.19473 1.20662 1.20660 1.20182 0.86732 0.99589 0.89796 1.21382 0.98036 0.95977 0.99855 1.21642 0.94080 0.98061 0.94455 1.22124 0.95312 1.00364 1.02151 1.22721 1.00179 0.89861 0.93689 1.67710 1.09114 1.26907 1.15929 1.22804 0.89522 0.96289 0.95530 1.45388 1.41075 1.11542 1.18312 1.25281 0.97513 0.84039 0.92306 1.70519 1.14779 1.26899 1.10962 1.19096 1.01528 0.89924 0.96586 1.19938 0.96633 0.97227 0.95305 1.20574 1.01679 0.92958 0.99986 1.20817 0.98978 0.99341 0.93902 1.20073 0.99357 0.93851 0.99207 1.18939 0.98894 0.96716 0.91763 0.92013 0.86905 0.91411 0.93920 0.94746 0.92224 0.88702 0.89454 0.84664 0.85194 0.83158 0.82480 0.77352 0.85796 0.85768 0.85530 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.21 37.16 0.34 -2.12 16 2 C 0.12 2.11 2.85 -69.08 -0.20 1.91 16 3 H 0.13 2.24 5.32 -51.93 -0.28 1.96 16 4 C 0.52 9.33 6.78 -10.99 -0.07 9.25 16 5 O -0.56 -10.63 14.63 5.56 0.08 -10.55 16 6 N -0.58 -10.49 2.45 -176.43 -0.43 -10.92 16 7 C 0.23 4.77 4.99 -5.19 -0.03 4.74 16 8 C -0.55 -12.10 7.58 -34.44 -0.26 -12.36 16 9 H 0.07 1.49 7.57 -52.48 -0.40 1.09 16 10 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.88 -21.98 13.29 55.43 0.74 -21.24 16 12 Si 0.89 18.52 29.54 -169.99 -5.02 13.50 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 16 C 0.16 2.56 5.58 -5.20 -0.03 2.53 16 17 C -0.15 -2.31 5.48 -104.48 -0.57 -2.88 16 18 C -0.06 -0.83 9.86 -39.27 -0.39 -1.22 16 19 C -0.18 -2.36 10.11 -39.44 -0.40 -2.76 16 20 C 0.09 1.25 11.18 -17.54 -0.20 1.05 16 21 N -0.49 -7.71 10.36 -13.25 -0.14 -7.84 16 22 C 0.12 1.82 10.86 -17.55 -0.19 1.63 16 23 N -0.47 -8.01 2.64 -109.93 -0.29 -8.30 16 24 C 0.29 4.90 10.64 -89.79 -0.96 3.95 16 25 N -0.51 -9.10 11.27 -12.05 -0.14 -9.24 16 26 C 0.05 0.81 7.23 -84.70 -0.61 0.19 16 27 C -0.07 -1.02 10.05 -39.61 -0.40 -1.41 16 28 C -0.13 -1.61 9.96 -39.98 -0.40 -2.01 16 29 C -0.11 -1.42 10.03 -39.52 -0.40 -1.82 16 30 C -0.10 -1.58 9.89 -39.50 -0.39 -1.97 16 31 C 0.05 0.78 6.87 -83.98 -0.58 0.21 16 32 H 0.06 0.88 8.00 -51.93 -0.42 0.47 16 33 H 0.11 1.94 5.95 -51.93 -0.31 1.63 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 36 H 0.03 0.75 5.84 -51.93 -0.30 0.44 16 37 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 38 H 0.09 1.44 8.02 -51.93 -0.42 1.02 16 39 H 0.09 1.37 7.31 -51.93 -0.38 0.99 16 40 H 0.14 2.04 7.94 -52.49 -0.42 1.62 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 44 H 0.21 3.07 7.70 -52.49 -0.40 2.66 16 45 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 47 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 48 H 0.12 1.79 7.76 -52.49 -0.41 1.39 16 LS Contribution 404.37 15.07 6.09 6.09 Total: -1.00 -27.88 404.37 -11.16 -39.04 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.24 Total: 11.00 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -5.82 Total: -1.53 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.26 Total: -57.55 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -27.88 -11.16 -39.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171473554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.174 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds