Wall clock time and date at job start Tue Mar 31 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47105 * 2 1 4 4 C 1.50700 * 109.47502 * 240.00313 * 2 1 3 5 5 O 1.21289 * 119.99916 * 256.75112 * 4 2 1 6 6 N 1.34775 * 120.00049 * 76.74361 * 4 2 1 7 7 C 1.46492 * 120.00237 * 4.70171 * 6 4 2 8 8 C 1.50698 * 109.47235 * 84.43769 * 7 6 4 9 9 H 1.08008 * 120.00155 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00470 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00338 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99687 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47412 * 90.00339 * 12 10 8 14 14 H 1.48503 * 109.47071 * 210.00015 * 12 10 8 15 15 H 1.48503 * 109.47219 * 330.00089 * 12 10 8 16 16 C 1.46509 * 119.99660 * 184.70109 * 6 4 2 17 17 C 1.50695 * 109.47146 * 90.00435 * 16 6 4 18 18 C 1.38678 * 120.41633 * 269.72027 * 17 16 6 19 19 C 1.38624 * 118.41799 * 179.78306 * 18 17 16 20 20 C 1.38227 * 119.16331 * 0.50951 * 19 18 17 21 21 N 1.31855 * 120.76154 * 359.72864 * 20 19 18 22 22 C 1.31879 * 121.72790 * 359.97438 * 21 20 19 23 23 N 1.46504 * 109.47349 * 119.99939 * 2 1 3 24 24 C 1.36035 * 126.34326 * 60.02173 * 23 2 1 25 25 N 1.30117 * 110.09595 * 179.74192 * 24 23 2 26 26 C 1.35782 * 109.64380 * 0.22693 * 25 24 23 27 27 C 1.39737 * 133.60527 * 179.97438 * 26 25 24 28 28 C 1.36605 * 119.88862 * 180.02562 * 27 26 25 29 29 C 1.38776 * 120.66906 * 0.02562 * 28 27 26 30 30 C 1.37857 * 120.44846 * 0.02562 * 29 28 27 31 31 C 1.38054 * 126.35198 * 240.15401 * 23 2 1 32 32 H 1.09000 * 109.47196 * 296.85291 * 1 2 3 33 33 H 1.09004 * 109.46623 * 56.85198 * 1 2 3 34 34 H 1.08999 * 109.47181 * 176.85100 * 1 2 3 35 35 H 1.09004 * 109.47472 * 204.43942 * 7 6 4 36 36 H 1.09001 * 109.46948 * 324.44140 * 7 6 4 37 37 H 0.96993 * 119.99904 * 179.97438 * 11 10 8 38 38 H 1.09006 * 109.46283 * 209.99954 * 16 6 4 39 39 H 1.08998 * 109.46994 * 329.99807 * 16 6 4 40 40 H 1.07999 * 120.78859 * 0.02562 * 18 17 16 41 41 H 1.08001 * 120.42048 * 180.21743 * 19 18 17 42 42 H 1.08001 * 119.62377 * 179.74694 * 20 19 18 43 43 H 1.08003 * 119.62081 * 180.02562 * 22 21 20 44 44 H 1.08000 * 124.95301 * 0.02562 * 24 23 2 45 45 H 1.08007 * 120.05913 * 359.97438 * 27 26 25 46 46 H 1.07998 * 119.66580 * 180.02562 * 28 27 26 47 47 H 1.08001 * 119.77156 * 179.97438 * 29 28 27 48 48 H 1.08002 * 120.15067 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4616 -1.8415 -1.1449 6 7 2.0048 -0.0887 -2.4260 7 6 1.5834 1.3116 -2.5139 8 6 2.7586 2.2090 -2.2231 9 1 3.7232 1.7793 -1.9960 10 6 2.6027 3.5787 -2.2471 11 7 3.6285 4.3619 -1.9938 12 14 0.9345 4.3221 -2.6392 13 1 0.1664 4.5058 -1.3816 14 1 1.1222 5.6381 -3.3012 15 1 0.1885 3.4134 -3.5465 16 6 2.3961 -0.8134 -3.6376 17 6 1.1847 -1.4783 -4.2386 18 6 0.8362 -2.7687 -3.8690 19 6 -0.2888 -3.3387 -4.4443 20 6 -1.0147 -2.6111 -5.3686 21 7 -0.6509 -1.3878 -5.7000 22 6 0.4100 -0.8119 -5.1687 23 7 2.0184 -0.6906 1.1962 24 6 1.7710 -1.9839 1.5379 25 7 2.3634 -2.2709 2.6603 26 6 3.0278 -1.1788 3.1181 27 6 3.8115 -0.9310 4.2482 28 6 4.3605 0.3053 4.4381 29 6 4.1482 1.3230 3.5187 30 6 3.3778 1.1017 2.3971 31 6 2.8129 -0.1489 2.1868 32 1 -0.3633 0.4642 0.9168 33 1 -0.3633 0.5620 -0.8605 34 1 -0.3633 -1.0261 -0.0565 35 1 1.2094 1.5163 -3.5171 36 1 0.7939 1.4998 -1.7863 37 1 3.5188 5.3255 -2.0110 38 1 2.8215 -0.1142 -4.3576 39 1 3.1382 -1.5705 -3.3844 40 1 1.4251 -3.3151 -3.1471 41 1 -0.5917 -4.3404 -4.1772 42 1 -1.8901 -3.0495 -5.8245 43 1 0.6768 0.1919 -5.4646 44 1 1.1739 -2.6733 0.9595 45 1 3.9821 -1.7154 4.9707 46 1 4.9659 0.4928 5.3126 47 1 4.5889 2.2951 3.6835 48 1 3.2153 1.8972 1.6850 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171473556.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:28 Heat of formation + Delta-G solvation = 85.858942 kcal Electronic energy + Delta-G solvation = -33090.454588 eV Core-core repulsion = 28918.531748 eV Total energy + Delta-G solvation = -4171.922840 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.97578 -40.34180 -39.38267 -37.05722 -35.66802 -34.73877 -33.16877 -32.39633 -31.72836 -31.05886 -29.22597 -28.94392 -28.38938 -26.53269 -24.44548 -23.58908 -22.96887 -22.66753 -22.28267 -21.79382 -20.51968 -18.71641 -17.38653 -17.30234 -17.00571 -16.86619 -16.55491 -16.02156 -15.60507 -15.51391 -15.46576 -14.92579 -14.55623 -14.44212 -14.03218 -13.71542 -13.67206 -13.44082 -13.35570 -13.22324 -12.97612 -12.82935 -12.70839 -12.39635 -12.09208 -11.99064 -11.83420 -11.70241 -11.46081 -11.40477 -11.24580 -11.05893 -10.87281 -10.51239 -10.34548 -9.91368 -9.80676 -9.68791 -9.48197 -9.45227 -8.99801 -8.92394 -8.16633 -8.09558 -7.82597 -6.41887 -4.47317 1.06066 1.24852 1.29650 1.76554 2.61220 2.88250 3.01607 3.09637 3.10174 3.13964 3.48645 3.92209 4.07268 4.14843 4.44141 4.52907 4.60410 4.79745 4.83215 4.86466 4.88784 4.94976 5.03359 5.07468 5.12415 5.22477 5.28391 5.39837 5.51541 5.59120 5.64882 5.69808 5.71334 5.79085 5.84436 5.88235 5.94606 5.99340 6.11446 6.13553 6.34065 6.37698 6.41396 6.70219 6.73423 6.75656 6.79127 6.91137 7.11835 7.17385 7.36197 7.71265 7.96403 8.11669 8.14562 8.40698 8.63575 9.14873 10.69728 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.008019 B = 0.004171 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.954358 B = 6712.117418 C = 9386.118678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.142 0.858 4 C 0.518 3.482 5 O -0.551 6.551 6 N -0.577 5.577 7 C 0.201 3.799 8 C -0.554 4.554 9 H 0.080 0.920 10 C 0.083 3.917 11 N -0.880 5.880 12 Si 0.864 3.136 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.262 1.262 16 C 0.160 3.840 17 C -0.148 4.148 18 C -0.056 4.056 19 C -0.179 4.179 20 C 0.092 3.908 21 N -0.488 5.488 22 C 0.113 3.887 23 N -0.471 5.471 24 C 0.291 3.709 25 N -0.510 5.510 26 C 0.046 3.954 27 C -0.074 4.074 28 C -0.130 4.130 29 C -0.110 4.110 30 C -0.099 4.099 31 C 0.050 3.950 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.031 0.969 37 H 0.269 0.731 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.205 0.795 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.128 0.872 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 -8.772 2.156 11.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 H 0.160 0.840 4 C 0.304 3.696 5 O -0.430 6.430 6 N -0.307 5.307 7 C 0.081 3.919 8 C -0.592 4.592 9 H 0.098 0.902 10 C -0.123 4.123 11 N -0.516 5.516 12 Si 0.690 3.310 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.186 1.186 16 C 0.036 3.964 17 C -0.152 4.152 18 C -0.082 4.082 19 C -0.198 4.198 20 C -0.065 4.065 21 N -0.197 5.197 22 C -0.045 4.045 23 N -0.160 5.160 24 C 0.005 3.995 25 N -0.230 5.230 26 C -0.072 4.072 27 C -0.094 4.094 28 C -0.150 4.150 29 C -0.130 4.130 30 C -0.120 4.120 31 C -0.059 4.059 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.169 0.831 43 H 0.174 0.826 44 H 0.221 0.779 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.146 0.854 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.869 -9.379 1.882 11.776 hybrid contribution -0.294 0.976 -0.276 1.056 sum -7.163 -8.403 1.606 11.158 Atomic orbital electron populations 1.22150 0.91501 1.03486 1.04430 1.21373 0.96331 0.99262 0.81941 0.84006 1.20264 0.78429 0.86220 0.84709 1.90647 1.47603 1.19063 1.85725 1.47836 1.64648 1.13382 1.04813 1.20040 0.96561 0.76963 0.98372 1.21314 0.96619 0.90599 1.50638 0.90178 1.24852 0.96538 0.96871 0.93996 1.69873 1.30199 1.04633 1.46936 0.87028 0.84545 0.79823 0.79566 1.19660 1.20531 1.18645 1.20212 0.92691 0.96607 0.86846 1.21398 0.99782 0.95423 0.98547 1.21671 0.95423 0.94391 0.96758 1.22136 0.96912 1.01590 0.99204 1.22735 0.98658 0.90437 0.94637 1.67712 1.15384 1.11190 1.25381 1.22789 0.89814 0.99496 0.92368 1.45129 1.41468 1.11411 1.17972 1.25090 0.97865 0.83926 0.92572 1.70483 1.14558 1.26843 1.11080 1.19056 1.01633 0.89787 0.96727 1.19911 0.96886 0.97213 0.95376 1.20586 1.01514 0.92937 1.00013 1.20849 0.98862 0.99406 0.93875 1.20190 0.98724 0.94092 0.98979 1.18909 0.98820 0.96716 0.91409 0.90580 0.89402 0.91579 0.94152 0.95152 0.92032 0.88565 0.89182 0.84423 0.85053 0.83128 0.82639 0.77862 0.85876 0.85806 0.85446 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.96 37.16 0.33 -1.75 16 2 C 0.12 1.93 2.56 -69.08 -0.18 1.75 16 3 H 0.14 2.58 6.18 -51.93 -0.32 2.26 16 4 C 0.52 9.18 6.87 -10.99 -0.08 9.10 16 5 O -0.55 -10.50 14.64 5.55 0.08 -10.42 16 6 N -0.58 -10.04 2.45 -176.43 -0.43 -10.47 16 7 C 0.20 3.82 3.87 -5.20 -0.02 3.80 16 8 C -0.55 -12.99 9.18 -34.44 -0.32 -13.31 16 9 H 0.08 2.17 8.06 -52.48 -0.42 1.74 16 10 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.88 -23.63 13.96 55.43 0.77 -22.86 16 12 Si 0.86 18.01 27.47 -169.99 -4.67 13.34 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.26 -5.12 6.54 56.52 0.37 -4.75 16 16 C 0.16 2.46 5.57 -5.19 -0.03 2.43 16 17 C -0.15 -2.06 5.48 -104.48 -0.57 -2.64 16 18 C -0.06 -0.72 9.86 -39.28 -0.39 -1.10 16 19 C -0.18 -1.97 10.11 -39.44 -0.40 -2.36 16 20 C 0.09 1.07 11.18 -17.55 -0.20 0.88 16 21 N -0.49 -6.85 10.36 -13.25 -0.14 -6.99 16 22 C 0.11 1.58 10.86 -17.55 -0.19 1.39 16 23 N -0.47 -8.04 2.56 -109.93 -0.28 -8.32 16 24 C 0.29 4.81 10.55 -89.78 -0.95 3.86 16 25 N -0.51 -9.19 11.27 -12.05 -0.14 -9.32 16 26 C 0.05 0.82 7.23 -84.70 -0.61 0.21 16 27 C -0.07 -1.11 10.05 -39.61 -0.40 -1.51 16 28 C -0.13 -1.73 9.96 -39.97 -0.40 -2.13 16 29 C -0.11 -1.57 10.03 -39.52 -0.40 -1.97 16 30 C -0.10 -1.66 9.89 -39.50 -0.39 -2.05 16 31 C 0.05 0.90 6.87 -83.99 -0.58 0.32 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.14 6.19 -51.93 -0.32 0.82 16 34 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 35 H 0.04 0.76 7.09 -51.93 -0.37 0.39 16 36 H 0.03 0.55 4.26 -51.93 -0.22 0.33 16 37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.10 1.43 8.02 -51.93 -0.42 1.01 16 39 H 0.09 1.42 7.31 -51.93 -0.38 1.04 16 40 H 0.14 1.78 7.95 -52.49 -0.42 1.37 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.16 2.06 8.06 -52.48 -0.42 1.64 16 44 H 0.20 2.82 7.95 -52.49 -0.42 2.40 16 45 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 48 H 0.13 2.21 7.76 -52.49 -0.41 1.80 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -30.00 401.62 -10.83 -40.83 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.24 Total: 11.31 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -5.85 Total: -3.16 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.21 Total: -57.97 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -4.67 Total: 13.34 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.00 -10.83 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171473556.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.690 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds