Wall clock time and date at job start Tue Mar 31 2020 07:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48503 * 109.46912 * 239.99942 * 3 2 1 5 5 H 1.48507 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47317 * 119.99722 * 3 2 1 7 7 C 1.37874 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99559 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00280 * 0.02562 * 7 2 1 10 10 O 1.42895 * 113.28269 * 313.06776 * 9 7 2 11 11 C 1.53495 * 114.20550 * 179.97438 * 9 7 2 12 12 N 1.47068 * 87.98452 * 220.34479 * 11 9 7 13 13 C 1.34777 * 136.05780 * 207.08046 * 12 11 9 14 14 O 1.21283 * 119.99951 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00123 * 180.02562 * 13 12 11 16 16 H 1.08998 * 109.49522 * 300.07320 * 15 13 12 17 17 C 1.53039 * 109.49899 * 180.02562 * 15 13 12 18 18 C 1.53038 * 109.53668 * 178.68512 * 17 15 13 19 19 C 1.53191 * 109.31433 * 61.36814 * 18 17 15 20 20 N 1.46929 * 108.77335 * 305.36458 * 19 18 17 21 21 C 1.34783 * 120.62852 * 233.58568 * 20 19 18 22 22 O 1.21585 * 119.99792 * 185.03457 * 21 20 19 23 23 N 1.34775 * 119.99902 * 5.03196 * 21 20 19 24 24 C 1.46504 * 119.99803 * 174.92309 * 23 21 20 25 25 C 1.54268 * 110.02787 * 87.09318 * 24 23 21 26 26 C 1.54964 * 104.15822 * 95.75531 * 25 24 23 27 27 C 1.54895 * 102.77693 * 37.88675 * 26 25 24 28 28 C 1.53870 * 110.03478 * 204.30828 * 24 23 21 29 29 C 1.46921 * 118.74098 * 53.85835 * 20 19 18 30 30 C 1.47067 * 87.88369 * 27.34677 * 12 11 9 31 31 H 0.97002 * 119.99806 * 0.02562 * 1 2 3 32 32 H 0.96707 * 114.00290 * 46.93197 * 10 9 7 33 33 H 1.09011 * 113.46335 * 105.56833 * 11 9 7 34 34 H 1.08998 * 113.47271 * 335.12891 * 11 9 7 35 35 H 1.09001 * 109.45987 * 58.66436 * 17 15 13 36 36 H 1.09001 * 109.45857 * 298.70845 * 17 15 13 37 37 H 1.08996 * 109.49818 * 301.41334 * 18 17 15 38 38 H 1.09003 * 109.52469 * 181.33353 * 18 17 15 39 39 H 1.09000 * 109.58570 * 185.57947 * 19 18 17 40 40 H 1.08999 * 109.58942 * 65.14640 * 19 18 17 41 41 H 0.97004 * 120.00096 * 354.93089 * 23 21 20 42 42 H 1.09003 * 110.01849 * 325.70379 * 24 23 21 43 43 H 1.09002 * 110.48557 * 214.39690 * 25 24 23 44 44 H 1.08999 * 110.49051 * 337.04374 * 25 24 23 45 45 H 1.09001 * 110.72364 * 279.57311 * 26 25 24 46 46 H 1.09002 * 110.92125 * 156.29590 * 26 25 24 47 47 H 1.09004 * 110.48232 * 203.40451 * 27 26 25 48 48 H 1.08993 * 110.48242 * 80.76413 * 27 26 25 49 49 H 1.09002 * 110.03093 * 359.95430 * 28 24 23 50 50 H 1.09001 * 110.02904 * 121.38207 * 28 24 23 51 51 H 1.09000 * 109.58684 * 65.92745 * 29 20 19 52 52 H 1.08997 * 109.58878 * 186.35035 * 29 20 19 53 53 H 1.09000 * 113.46768 * 87.43532 * 30 12 11 54 54 H 1.08995 * 113.46434 * 217.87514 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.1920 -2.5399 0.9590 11 6 2.1488 -3.7442 0.0005 12 7 1.2099 -4.3574 -0.9510 13 6 0.8355 -5.6114 -1.2733 14 8 1.3301 -6.5584 -0.6994 15 6 -0.1979 -5.8368 -2.3468 16 1 -1.1297 -5.3476 -2.0632 17 6 -0.4403 -7.3384 -2.5153 18 6 -1.5132 -7.5670 -3.5823 19 6 -1.0254 -7.0030 -4.9204 20 7 -0.6523 -5.5944 -4.7320 21 6 -1.1779 -4.6338 -5.5179 22 8 -0.7933 -3.4851 -5.4135 23 7 -2.1296 -4.9466 -6.4195 24 6 -2.7800 -3.8876 -7.1953 25 6 -1.9598 -3.5839 -8.4661 26 6 -2.6403 -4.4341 -9.5686 27 6 -4.1429 -4.3211 -9.2098 28 6 -4.1672 -4.3565 -7.6678 29 6 0.3092 -5.2536 -3.6746 30 6 0.8644 -3.0005 -1.4007 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3717 -1.7542 0.9561 33 1 2.1849 -4.2532 0.9638 34 1 3.1384 -3.5658 -0.4200 35 1 -0.7746 -7.7608 -1.5677 36 1 0.4863 -7.8236 -2.8222 37 1 -2.4328 -7.0613 -3.2878 38 1 -1.7027 -8.6355 -3.6853 39 1 -1.8234 -7.0739 -5.6595 40 1 -0.1579 -7.5683 -5.2609 41 1 -2.3840 -5.8729 -6.5546 42 1 -2.8767 -2.9868 -6.5892 43 1 -2.0168 -2.5237 -8.7126 44 1 -0.9223 -3.8904 -8.3329 45 1 -2.3077 -5.4709 -9.5166 46 1 -2.4467 -4.0170 -10.5569 47 1 -4.6974 -5.1653 -9.6196 48 1 -4.5528 -3.3801 -9.5763 49 1 -4.3563 -5.3723 -7.3206 50 1 -4.9372 -3.6833 -7.2910 51 1 1.2833 -5.6793 -3.9155 52 1 0.3921 -4.1700 -3.5915 53 1 1.5155 -2.6260 -2.1906 54 1 -0.1936 -2.8759 -1.6313 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186834555.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:05 Heat of formation + Delta-G solvation = -100.868739 kcal Electronic energy + Delta-G solvation = -34757.281156 eV Core-core repulsion = 30308.066709 eV Total energy + Delta-G solvation = -4449.214447 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 365.215 amu Computer time = 6.53 seconds Orbital eigenvalues (eV) -41.91679 -41.22717 -39.70656 -38.92264 -37.85216 -35.94564 -34.94909 -34.14828 -33.55184 -32.56939 -30.27782 -29.62730 -28.64738 -27.37091 -26.90908 -26.11475 -24.91974 -22.76120 -21.95166 -21.57670 -21.17391 -20.48922 -20.05417 -19.34463 -18.96292 -17.92977 -17.68247 -17.29838 -16.91512 -16.68183 -16.57365 -16.15112 -16.01434 -15.87443 -15.54354 -15.38114 -14.90797 -14.88853 -14.52727 -14.40368 -14.30449 -14.08427 -14.03674 -13.84344 -13.52353 -13.43347 -12.85625 -12.77766 -12.71888 -12.63376 -12.58143 -12.25498 -12.21898 -12.09267 -12.01559 -11.99439 -11.93148 -11.75025 -11.68628 -11.46428 -11.41354 -11.22127 -10.93856 -10.65931 -10.27545 -10.21828 -9.64566 -9.57021 -8.29397 -6.46629 1.36137 1.47222 1.47269 1.55788 1.65268 1.92432 2.08526 2.39085 2.85964 2.92436 3.36614 3.57790 3.63360 3.70466 3.70970 3.74772 3.94612 3.98338 4.02703 4.08733 4.13218 4.40641 4.44526 4.47780 4.48982 4.54078 4.56928 4.60196 4.63993 4.67230 4.71788 4.74754 4.78942 4.82731 4.86096 4.89625 4.90779 4.97767 5.08757 5.10730 5.13016 5.20218 5.25999 5.32968 5.34124 5.39941 5.47780 5.66186 5.70325 5.87476 5.88456 6.58911 6.80636 6.93855 7.06312 7.27063 7.44271 7.52384 8.76743 Molecular weight = 365.21amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.002881 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.624088 B = 9715.475622 C =12190.167320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.029 3.971 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.220 3.780 10 O -0.584 6.584 11 C 0.108 3.892 12 N -0.634 5.634 13 C 0.536 3.464 14 O -0.586 6.586 15 C -0.104 4.104 16 H 0.087 0.913 17 C -0.094 4.094 18 C -0.124 4.124 19 C 0.106 3.894 20 N -0.625 5.625 21 C 0.699 3.301 22 O -0.633 6.633 23 N -0.721 5.721 24 C 0.152 3.848 25 C -0.135 4.135 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.123 4.123 29 C 0.148 3.852 30 C 0.093 3.907 31 H 0.276 0.724 32 H 0.389 0.611 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.409 0.591 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.086 0.914 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 -13.705 -20.068 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.171 4.171 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.095 0.905 9 C 0.178 3.822 10 O -0.397 6.397 11 C -0.014 4.014 12 N -0.367 5.367 13 C 0.327 3.673 14 O -0.468 6.468 15 C -0.126 4.126 16 H 0.106 0.894 17 C -0.132 4.132 18 C -0.162 4.162 19 C -0.015 4.015 20 N -0.362 5.362 21 C 0.400 3.600 22 O -0.514 6.514 23 N -0.380 5.380 24 C 0.046 3.954 25 C -0.174 4.174 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.161 4.161 29 C 0.024 3.976 30 C -0.030 4.030 31 H 0.086 0.914 32 H 0.245 0.755 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.249 0.751 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.096 0.904 51 H 0.091 0.909 52 H 0.090 0.910 53 H 0.104 0.896 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.249 -14.047 -19.623 25.844 hybrid contribution 0.260 1.455 0.418 1.536 sum -8.988 -12.591 -19.205 24.661 Atomic orbital electron populations 1.69327 1.07304 1.29009 1.50286 1.25826 0.95787 1.02927 0.92566 0.85387 0.78244 0.77718 0.78996 1.19359 1.20785 1.19481 1.21644 0.94257 0.90501 1.52700 0.90520 1.19854 0.85488 0.91950 0.84871 1.86013 1.45743 1.48245 1.59734 1.23312 0.94519 0.91287 0.92307 1.49830 1.42214 1.05155 1.39481 1.20559 0.82998 0.80074 0.83692 1.90607 1.58803 1.41160 1.56238 1.21664 0.97133 1.00941 0.92859 0.89446 1.21332 1.00619 0.90794 1.00413 1.21935 0.97499 1.03499 0.93279 1.22016 1.01878 0.79230 0.98409 1.47248 1.46721 1.07744 1.34464 1.16128 0.80071 0.84002 0.79783 1.90940 1.65590 1.21062 1.73819 1.45312 1.40260 1.11241 1.41146 1.21545 0.92643 0.89674 0.91492 1.22770 0.98743 1.00570 0.95348 1.22502 0.95291 0.99928 0.97807 1.22361 0.96224 1.02996 0.94020 1.22430 0.93885 1.02855 0.96920 1.21211 0.91339 1.00842 0.84250 1.23961 0.99613 0.78001 1.01455 0.91405 0.75529 0.92434 0.87770 0.91697 0.90948 0.91510 0.86735 0.87408 0.89401 0.75072 0.92513 0.91503 0.93306 0.90840 0.90860 0.89563 0.91164 0.89376 0.90433 0.90850 0.90982 0.89599 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.76 11.01 21.45 0.24 -48.52 16 2 C 0.03 1.50 5.39 84.65 0.46 1.96 16 3 Si 0.97 40.97 29.54 68.60 2.03 43.00 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.55 -28.63 8.68 25.60 0.22 -28.41 16 8 H 0.08 3.79 7.81 -2.91 -0.02 3.77 16 9 C 0.22 11.08 1.59 -11.12 -0.02 11.06 16 10 O -0.58 -31.84 13.55 -148.98 -2.02 -33.86 16 11 C 0.11 4.91 8.02 83.18 0.67 5.57 16 12 N -0.63 -27.89 3.64 -858.23 -3.12 -31.01 16 13 C 0.54 21.94 7.40 87.66 0.65 22.59 16 14 O -0.59 -26.60 16.76 -3.04 -0.05 -26.65 16 15 C -0.10 -3.30 2.57 -11.32 -0.03 -3.33 16 16 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 17 C -0.09 -2.24 4.46 30.62 0.14 -2.11 16 18 C -0.12 -1.83 6.08 30.67 0.19 -1.64 16 19 C 0.11 1.48 6.43 86.36 0.56 2.04 16 20 N -0.62 -15.34 2.97 -836.06 -2.48 -17.82 16 21 C 0.70 20.00 8.29 179.05 1.48 21.48 16 22 O -0.63 -25.28 15.50 -3.98 -0.06 -25.34 16 23 N -0.72 -13.77 4.95 -454.34 -2.25 -16.02 16 24 C 0.15 2.90 3.19 45.71 0.15 3.04 16 25 C -0.14 -2.48 6.54 31.70 0.21 -2.28 16 26 C -0.12 -1.33 6.91 31.91 0.22 -1.11 16 27 C -0.12 -1.05 6.83 31.67 0.22 -0.83 16 28 C -0.12 -1.39 6.57 31.31 0.21 -1.18 16 29 C 0.15 4.57 5.54 86.51 0.48 5.05 16 30 C 0.09 4.30 6.26 83.27 0.52 4.82 16 31 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.39 21.56 6.32 -74.05 -0.47 21.09 16 33 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.10 4.26 8.10 -2.39 -0.02 4.24 16 35 H 0.06 1.70 8.07 -2.39 -0.02 1.68 16 36 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.80 5.57 -2.39 -0.01 0.79 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.41 4.71 5.76 -92.71 -0.53 4.18 16 42 H 0.06 1.48 7.66 -2.39 -0.02 1.46 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.11 8.04 -2.39 -0.02 1.09 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.09 0.70 7.61 -2.39 -0.02 0.68 16 50 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.07 2.73 5.48 -2.39 -0.01 2.72 16 53 H 0.09 3.89 8.10 -2.39 -0.02 3.87 16 54 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -71.58 420.79 -1.50 -73.08 By element: Atomic # 1 Polarization: 46.50 SS G_CDS: -0.09 Total: 46.42 kcal Atomic # 6 Polarization: 30.42 SS G_CDS: 6.31 Total: 36.73 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -7.62 Total: -113.36 kcal Atomic # 8 Polarization: -83.72 SS G_CDS: -2.13 Total: -85.86 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -71.58 -1.50 -73.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186834555.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.791 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.54 seconds