Wall clock time and date at job start Tue Mar 31 2020 07:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46884 * 2 1 4 4 C 1.50705 * 109.47202 * 120.00444 * 2 1 3 5 5 H 1.07998 * 119.99710 * 120.00449 * 4 2 1 6 6 C 1.37874 * 119.99653 * 299.99621 * 4 2 1 7 7 N 1.31513 * 120.00588 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99715 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46915 * 60.00302 * 8 6 4 10 10 H 1.48504 * 109.47272 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47393 * 300.00402 * 8 6 4 12 12 N 1.46503 * 109.47004 * 240.00501 * 2 1 3 13 13 C 1.46503 * 119.99770 * 299.99956 * 12 2 1 14 14 C 1.34769 * 119.99997 * 119.99716 * 12 2 1 15 15 O 1.21585 * 120.00034 * 0.02562 * 14 12 2 16 16 N 1.34781 * 119.99988 * 179.97438 * 14 12 2 17 17 C 1.39987 * 119.99909 * 175.52833 * 16 14 12 18 18 C 1.38730 * 120.10964 * 34.73014 * 17 16 14 19 19 C 1.38363 * 120.17278 * 179.71862 * 18 17 16 20 20 C 1.38322 * 119.93052 * 0.55498 * 19 18 17 21 21 C 1.38522 * 119.96839 * 359.71932 * 20 19 18 22 22 C 1.38091 * 120.29690 * 0.02562 * 21 20 19 23 23 Br 1.89093 * 120.07451 * 179.97438 * 22 21 20 24 24 C 1.51399 * 109.72965 * 179.69946 * 20 19 18 25 25 C 1.54336 * 105.17538 * 17.21051 * 24 20 19 26 26 C 1.51389 * 130.32573 * 180.18528 * 19 18 17 27 27 H 1.08998 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46999 * 299.99542 * 1 2 3 29 29 H 1.08996 * 109.47394 * 59.99515 * 1 2 3 30 30 H 0.96998 * 120.00569 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47023 * 89.99782 * 13 12 2 32 32 H 1.08999 * 109.46663 * 210.00184 * 13 12 2 33 33 H 1.09005 * 109.47014 * 330.00004 * 13 12 2 34 34 H 0.97002 * 119.99325 * 355.53433 * 16 14 12 35 35 H 1.08004 * 119.91753 * 359.97438 * 18 17 16 36 36 H 1.07993 * 119.84921 * 179.97438 * 21 20 19 37 37 H 1.09007 * 110.29819 * 136.13389 * 24 20 19 38 38 H 1.08997 * 110.30549 * 258.18519 * 24 20 19 39 39 H 1.08999 * 110.82545 * 91.84230 * 25 24 20 40 40 H 1.09001 * 110.81982 * 215.38332 * 25 24 20 41 41 H 1.09003 * 110.29703 * 44.21100 * 26 19 18 42 42 H 1.08997 * 110.38709 * 282.10183 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3215 -1.1206 4.0079 9 1 3.8065 -1.1212 4.0080 10 1 1.8261 -0.4209 5.2205 11 1 1.8260 -2.5205 4.0076 12 7 2.0184 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.0872 1.1284 -1.8907 16 7 3.2428 -0.6709 -3.1836 17 6 3.9686 0.0337 -4.1513 18 6 4.8264 1.0554 -3.7707 19 6 5.5488 1.7488 -4.7255 20 6 5.4071 1.4304 -6.0641 21 6 4.5467 0.4143 -6.4463 22 6 3.8277 -0.2839 -5.4963 23 35 2.6544 -1.6694 -6.0251 24 6 6.2918 2.3307 -6.9001 25 6 7.3100 2.9310 -5.9077 26 6 6.5383 2.8843 -4.5720 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 0.7083 1.1607 3.4845 31 1 0.7375 -2.1442 -1.9994 32 1 2.4629 -2.5817 -1.9865 33 1 1.5295 -2.5968 -0.4709 34 1 3.0633 -1.6164 -3.3049 35 1 4.9338 1.3076 -2.7260 36 1 4.4372 0.1676 -7.4920 37 1 6.8068 1.7499 -7.6654 38 1 5.6994 3.1211 -7.3609 39 1 8.2096 2.3177 -5.8571 40 1 7.5549 3.9582 -6.1779 41 1 7.2216 2.6814 -3.7473 42 1 6.0138 3.8251 -4.4051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192480269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:35 Heat of formation + Delta-G solvation = 4.512214 kcal Electronic energy + Delta-G solvation = -24799.147823 eV Core-core repulsion = 21211.399665 eV Total energy + Delta-G solvation = -3587.748159 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.64176 -39.37332 -36.58879 -35.29746 -33.81069 -32.71936 -31.75567 -30.53441 -29.36212 -27.71942 -26.96515 -26.11309 -25.22913 -23.27654 -21.66276 -20.91029 -20.44186 -19.23148 -17.75872 -16.85448 -16.23354 -15.93192 -15.72566 -15.20595 -15.01099 -14.71287 -14.14864 -13.83805 -13.38563 -13.28118 -13.08906 -12.96842 -12.61659 -12.54067 -12.07034 -11.82842 -11.62316 -11.54397 -11.42349 -11.30876 -11.10227 -11.05858 -10.87583 -10.71921 -10.53268 -10.33046 -10.27777 -10.18120 -9.88561 -9.39477 -9.15624 -8.59610 -8.44495 -7.98029 -7.56677 -6.08954 -4.17258 1.08834 1.35373 1.58329 3.07292 3.26823 3.32202 3.34369 3.47549 3.87839 4.27984 4.37630 4.42190 4.53989 4.85647 4.91347 5.06720 5.12103 5.22248 5.40385 5.55345 5.56872 5.61101 5.63983 5.70681 5.86888 5.92068 5.96246 6.03253 6.13924 6.21196 6.29567 6.50980 6.66032 6.68164 6.79908 6.99025 7.07071 7.12058 7.43105 7.65400 7.77818 8.03771 8.18388 8.56933 8.82687 9.13452 9.49462 10.96262 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.003248 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.982233 B = 8619.406186 C =10390.214008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.273 3.727 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.600 5.600 13 C 0.083 3.917 14 C 0.698 3.302 15 O -0.577 6.577 16 N -0.692 5.692 17 C 0.213 3.787 18 C -0.105 4.105 19 C -0.061 4.061 20 C -0.124 4.124 21 C -0.060 4.060 22 C -0.130 4.130 23 Br -0.053 7.053 24 C -0.075 4.075 25 C -0.120 4.120 26 C -0.084 4.084 27 H 0.030 0.970 28 H 0.095 0.905 29 H 0.011 0.989 30 H 0.264 0.736 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.406 0.594 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -2.708 -20.481 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.173 3.827 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.334 5.334 13 C -0.061 4.061 14 C 0.400 3.600 15 O -0.454 6.454 16 N -0.342 5.342 17 C 0.113 3.887 18 C -0.127 4.127 19 C -0.062 4.062 20 C -0.126 4.126 21 C -0.081 4.081 22 C -0.213 4.213 23 Br 0.032 6.968 24 C -0.112 4.112 25 C -0.157 4.157 26 C -0.121 4.121 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.244 0.756 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.534 -2.300 -20.241 21.720 hybrid contribution 0.241 -0.894 0.931 1.313 sum 7.775 -3.194 -19.309 21.060 Atomic orbital electron populations 1.22104 0.98111 0.99457 1.00878 1.18917 0.90742 0.94307 0.78735 0.91674 1.21287 1.32008 1.13137 0.90277 0.92277 1.24876 0.94907 0.94969 0.98910 1.69866 1.36153 1.22533 1.23921 0.86546 0.79230 0.79560 0.81978 1.20247 1.21149 1.20244 1.47619 1.50593 1.11566 1.23625 1.21574 0.98461 0.83393 1.02699 1.15950 0.79670 0.84939 0.79440 1.90859 1.62645 1.15464 1.76477 1.43106 1.57017 1.13039 1.21049 1.17048 0.91585 0.94028 0.86014 1.20872 0.94379 0.95808 1.01608 1.20580 0.96418 0.96074 0.93145 1.20456 0.99463 0.97548 0.95145 1.20184 0.95112 0.94424 0.98340 1.21381 1.04407 1.01900 0.93598 1.96643 1.62002 1.46850 1.91278 1.20970 0.95639 0.97291 0.97272 1.22293 0.97834 1.01285 0.94291 1.21087 0.96097 0.96470 0.98463 0.95135 0.88701 0.96951 0.92576 0.93593 0.93640 0.89456 0.75581 0.82975 0.85278 0.90876 0.90326 0.90930 0.90516 0.90310 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.18 16 2 C 0.27 6.94 2.64 -69.08 -0.18 6.76 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.09 7.99 -34.44 -0.28 -14.37 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.60 -12.89 2.75 -181.00 -0.50 -13.39 16 13 C 0.08 1.40 9.24 59.85 0.55 1.95 16 14 C 0.70 14.90 8.13 -86.92 -0.71 14.19 16 15 O -0.58 -14.21 13.09 5.29 0.07 -14.14 16 16 N -0.69 -11.86 4.88 -14.23 -0.07 -11.92 16 17 C 0.21 3.47 6.30 -83.70 -0.53 2.94 16 18 C -0.11 -1.75 8.70 -39.35 -0.34 -2.09 16 19 C -0.06 -0.83 6.13 -104.21 -0.64 -1.47 16 20 C -0.12 -1.48 6.14 -104.14 -0.64 -2.12 16 21 C -0.06 -0.73 9.77 -39.53 -0.39 -1.12 16 22 C -0.13 -1.82 6.24 -39.38 -0.25 -2.06 16 23 Br -0.05 -0.64 32.50 -68.01 -2.21 -2.85 16 24 C -0.07 -0.65 6.77 -26.84 -0.18 -0.83 16 25 C -0.12 -0.96 7.08 -25.33 -0.18 -1.14 16 26 C -0.08 -0.89 6.77 -26.85 -0.18 -1.07 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.09 2.48 6.07 -51.92 -0.32 2.17 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.63 6.30 -51.93 -0.33 0.30 16 33 H 0.09 1.54 7.02 -51.93 -0.36 1.17 16 34 H 0.41 6.01 5.58 -40.82 -0.23 5.78 16 35 H 0.15 2.89 6.19 -52.48 -0.32 2.56 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -30.31 356.12 -11.07 -41.38 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.64 Total: 5.89 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.69 Total: -1.92 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.06 Total: -49.53 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.21 Total: -2.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.31 -11.07 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192480269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.889 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds