Wall clock time and date at job start Tue Mar 31 2020 07:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47086 * 2 1 4 4 C 1.50696 * 109.47249 * 239.99844 * 2 1 3 5 5 H 1.08001 * 120.00475 * 239.99781 * 4 2 1 6 6 C 1.37877 * 120.00191 * 59.99553 * 4 2 1 7 7 N 1.31524 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00408 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47205 * 270.00399 * 8 6 4 10 10 H 1.48502 * 109.46849 * 30.00135 * 8 6 4 11 11 H 1.48497 * 109.47192 * 149.99880 * 8 6 4 12 12 N 1.46500 * 109.47381 * 119.99485 * 2 1 3 13 13 C 1.46502 * 119.99855 * 60.00000 * 12 2 1 14 14 C 1.34776 * 120.00334 * 239.99882 * 12 2 1 15 15 O 1.21592 * 120.00015 * 0.02562 * 14 12 2 16 16 N 1.34773 * 120.00292 * 179.97438 * 14 12 2 17 17 C 1.39989 * 120.00251 * 175.53125 * 16 14 12 18 18 C 1.38730 * 120.10704 * 34.72180 * 17 16 14 19 19 C 1.38367 * 120.16848 * 179.77051 * 18 17 16 20 20 C 1.38323 * 119.93505 * 0.50986 * 19 18 17 21 21 C 1.38523 * 119.96101 * 359.74680 * 20 19 18 22 22 C 1.38082 * 120.30193 * 0.02562 * 21 20 19 23 23 Br 1.89106 * 120.07382 * 179.97438 * 22 21 20 24 24 C 1.51393 * 109.73218 * 179.74537 * 20 19 18 25 25 C 1.54342 * 105.17539 * 17.20921 * 24 20 19 26 26 C 1.51393 * 130.32234 * 180.20119 * 19 18 17 27 27 H 1.08995 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47065 * 300.00263 * 1 2 3 29 29 H 1.08996 * 109.47219 * 59.99790 * 1 2 3 30 30 H 0.96995 * 119.99659 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46764 * 89.99652 * 13 12 2 32 32 H 1.08994 * 109.47034 * 210.00130 * 13 12 2 33 33 H 1.09001 * 109.47117 * 330.00440 * 13 12 2 34 34 H 0.97005 * 119.99871 * 355.53131 * 16 14 12 35 35 H 1.07998 * 119.91781 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.84359 * 179.97438 * 21 20 19 37 37 H 1.08994 * 110.30125 * 136.13588 * 24 20 19 38 38 H 1.09000 * 110.30182 * 258.19149 * 24 20 19 39 39 H 1.08993 * 110.81874 * 91.84486 * 25 24 20 40 40 H 1.09001 * 110.81834 * 215.38589 * 25 24 20 41 41 H 1.08998 * 110.29870 * 44.15463 * 26 19 18 42 42 H 1.08998 * 110.38110 * 282.05095 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.6296 -0.5461 -4.4124 10 1 2.4858 -2.5664 -3.7118 11 1 1.3430 -0.9495 -5.1119 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4282 14 6 2.7933 -0.0355 2.0833 15 8 3.0867 1.1288 1.8911 16 7 3.2422 -0.6705 3.1840 17 6 4.1224 -0.0206 4.0572 18 6 4.0074 1.3451 4.2721 19 6 4.8738 1.9881 5.1385 20 6 5.8638 1.2695 5.7841 21 6 5.9832 -0.0933 5.5664 22 6 5.1179 -0.7399 4.7063 23 35 5.2872 -2.6004 4.4132 24 6 6.6759 2.1955 6.6645 25 6 5.8093 3.4623 6.8262 26 6 4.9539 3.4451 5.5418 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.7094 1.1616 -3.4844 31 1 2.4158 -2.7376 0.9718 32 1 1.6239 -2.2850 2.5003 33 1 0.6905 -2.3001 0.9848 34 1 2.9553 -1.5781 3.3713 35 1 3.2371 1.9073 3.7651 36 1 6.7572 -0.6524 6.0711 37 1 6.8553 1.7335 7.6353 38 1 7.6222 2.4418 6.1829 39 1 5.1790 3.3900 7.7125 40 1 6.4326 4.3557 6.8646 41 1 3.9572 3.8363 5.7458 42 1 5.4359 4.0298 4.7583 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192480279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:43 Heat of formation + Delta-G solvation = 5.428131 kcal Electronic energy + Delta-G solvation = -24804.994098 eV Core-core repulsion = 21217.285656 eV Total energy + Delta-G solvation = -3587.708441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.64265 -39.37581 -36.59241 -35.30305 -33.81093 -32.71177 -31.75066 -30.53025 -29.36024 -27.71496 -26.96608 -26.15522 -25.21350 -23.28134 -21.65315 -20.91454 -20.43768 -19.23719 -17.75371 -16.84505 -16.24069 -15.92459 -15.71943 -15.21551 -15.02228 -14.69222 -14.13774 -13.86418 -13.41970 -13.32942 -13.04233 -12.95778 -12.63844 -12.60168 -12.08444 -11.81488 -11.58504 -11.53540 -11.43286 -11.31469 -11.11823 -11.04061 -10.85035 -10.72439 -10.53710 -10.30389 -10.25432 -10.17012 -9.90034 -9.36013 -9.17242 -8.59177 -8.43495 -7.97682 -7.56390 -6.08092 -4.15645 1.09193 1.35549 1.59996 3.06355 3.27563 3.34137 3.36519 3.47630 3.88285 4.29107 4.37619 4.41956 4.53577 4.85080 4.91436 5.06616 5.11853 5.23387 5.40277 5.54486 5.55366 5.60746 5.63652 5.70036 5.85772 5.92260 5.97250 6.03554 6.13834 6.19947 6.24535 6.50981 6.65172 6.68422 6.77321 6.95876 7.06366 7.10194 7.42635 7.67672 7.77273 8.03468 8.19053 8.57076 8.84686 9.13419 9.51106 10.97310 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.003289 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.337701 B = 8510.307974 C = 9976.000512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.600 5.600 13 C 0.086 3.914 14 C 0.698 3.302 15 O -0.577 6.577 16 N -0.692 5.692 17 C 0.213 3.787 18 C -0.106 4.106 19 C -0.062 4.062 20 C -0.124 4.124 21 C -0.060 4.060 22 C -0.130 4.130 23 Br -0.052 7.052 24 C -0.075 4.075 25 C -0.119 4.119 26 C -0.084 4.084 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.095 0.905 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.405 0.595 35 H 0.152 0.848 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.182 -2.817 20.432 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.334 5.334 13 C -0.058 4.058 14 C 0.400 3.600 15 O -0.454 6.454 16 N -0.342 5.342 17 C 0.113 3.887 18 C -0.127 4.127 19 C -0.063 4.063 20 C -0.126 4.126 21 C -0.080 4.080 22 C -0.212 4.212 23 Br 0.033 6.967 24 C -0.112 4.112 25 C -0.157 4.157 26 C -0.121 4.121 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.244 0.756 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.262 -2.599 19.880 21.685 hybrid contribution 0.129 -0.838 -0.882 1.223 sum 8.390 -3.437 18.998 21.051 Atomic orbital electron populations 1.22121 0.98156 0.99416 1.00951 1.18923 0.90667 0.94316 0.78846 0.91647 1.21327 1.31794 1.13068 0.90247 0.92260 1.24878 0.94923 0.94999 0.98927 1.69878 1.36364 1.22606 1.23778 0.86486 0.78656 0.79876 0.82321 1.20602 1.19932 1.21120 1.47615 1.50543 1.11589 1.23699 1.21528 1.02278 0.83480 0.98526 1.15943 0.79668 0.85056 0.79320 1.90861 1.62425 1.15175 1.76970 1.43102 1.48529 1.18794 1.23787 1.17047 0.89323 0.91797 0.90493 1.20838 1.01341 0.92649 0.97862 1.20576 0.94602 0.96112 0.94978 1.20451 0.98555 0.92957 1.00643 1.20189 0.97652 0.93285 0.96904 1.21388 1.01052 0.90921 1.07868 1.96653 1.97777 1.05845 1.96393 1.20969 0.97936 0.93842 0.98439 1.22292 0.98065 0.97653 0.97684 1.21083 1.01141 0.92281 0.97573 0.95068 0.96907 0.88621 0.92672 0.92998 0.93786 0.90212 0.75599 0.83089 0.85269 0.90874 0.90311 0.90943 0.90517 0.90363 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.95 37.16 0.33 -3.15 16 2 C 0.27 6.92 2.64 -69.08 -0.18 6.74 16 3 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.53 -14.21 8.37 -34.44 -0.29 -14.50 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.60 -12.89 2.75 -181.01 -0.50 -13.39 16 13 C 0.09 1.45 9.48 59.85 0.57 2.02 16 14 C 0.70 14.88 8.13 -86.92 -0.71 14.18 16 15 O -0.58 -14.20 13.09 5.28 0.07 -14.13 16 16 N -0.69 -11.84 4.88 -14.23 -0.07 -11.91 16 17 C 0.21 3.47 6.30 -83.70 -0.53 2.95 16 18 C -0.11 -1.73 8.70 -39.35 -0.34 -2.07 16 19 C -0.06 -0.83 6.13 -104.20 -0.64 -1.47 16 20 C -0.12 -1.49 6.14 -104.15 -0.64 -2.12 16 21 C -0.06 -0.74 9.77 -39.53 -0.39 -1.12 16 22 C -0.13 -1.83 6.24 -39.39 -0.25 -2.08 16 23 Br -0.05 -0.65 32.50 -68.01 -2.21 -2.86 16 24 C -0.07 -0.65 6.77 -26.84 -0.18 -0.83 16 25 C -0.12 -0.94 7.08 -25.33 -0.18 -1.12 16 26 C -0.08 -0.87 6.77 -26.84 -0.18 -1.05 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.59 6.30 -51.93 -0.33 0.26 16 33 H 0.08 1.33 6.43 -51.93 -0.33 1.00 16 34 H 0.41 5.97 5.58 -40.82 -0.23 5.75 16 35 H 0.15 2.78 6.19 -52.49 -0.32 2.46 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -30.67 355.44 -11.01 -41.68 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.57 Total: 5.45 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.69 Total: -1.96 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.06 Total: -49.65 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.07 Total: -14.13 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.21 Total: -2.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.67 -11.01 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192480279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.109 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds