Wall clock time and date at job start Tue Mar 31 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47740 * 2 1 4 4 N 1.46499 * 109.47157 * 239.99470 * 2 1 3 5 5 C 1.34783 * 119.99868 * 85.00296 * 4 2 1 6 6 O 1.21692 * 119.99700 * 0.02562 * 5 4 2 7 7 C 1.46365 * 120.00263 * 179.97438 * 5 4 2 8 8 H 1.07999 * 120.00071 * 353.94348 * 7 5 4 9 9 C 1.40043 * 120.00336 * 173.93773 * 7 5 4 10 10 N 1.30672 * 120.00041 * 6.15334 * 9 7 5 11 11 Si 1.86800 * 120.00269 * 186.15214 * 9 7 5 12 12 H 1.48499 * 109.47173 * 94.98954 * 11 9 7 13 13 H 1.48507 * 109.47294 * 214.98328 * 11 9 7 14 14 H 1.48489 * 109.47369 * 334.98451 * 11 9 7 15 15 C 1.50705 * 109.47214 * 119.99840 * 2 1 3 16 16 N 1.30972 * 126.43843 * 255.00261 * 15 2 1 17 17 C 1.35223 * 105.58148 * 179.97438 * 16 15 2 18 18 C 1.48407 * 126.41839 * 179.97438 * 17 16 15 19 19 C 1.39337 * 120.10945 * 359.71878 * 18 17 16 20 20 C 1.37991 * 119.89095 * 179.79275 * 19 18 17 21 21 C 1.38418 * 120.10562 * 0.48830 * 20 19 18 22 22 Br 1.89108 * 119.88721 * 179.76629 * 21 20 19 23 23 C 1.38418 * 120.22310 * 359.73808 * 21 20 19 24 24 C 1.37988 * 120.10871 * 0.03009 * 23 21 20 25 25 N 1.30771 * 107.16825 * 0.22132 * 17 16 15 26 26 O 1.21296 * 110.09796 * 359.60664 * 25 17 16 27 27 H 1.08993 * 109.47691 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47158 * 300.00480 * 1 2 3 29 29 H 1.09002 * 109.47089 * 59.99505 * 1 2 3 30 30 H 0.97000 * 120.00696 * 265.00256 * 4 2 1 31 31 H 0.97006 * 120.00678 * 179.97438 * 10 9 7 32 32 H 1.08007 * 120.05631 * 0.02562 * 19 18 17 33 33 H 1.08002 * 119.94483 * 180.20511 * 20 19 18 34 34 H 1.08000 * 119.94268 * 180.02562 * 23 21 20 35 35 H 1.08006 * 120.05280 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3572 6 8 1.8581 1.1625 -2.4117 7 6 2.6355 -0.7082 -3.5521 8 1 2.9849 -1.7277 -3.4821 9 6 2.6495 -0.0464 -4.7862 10 7 2.3413 1.2218 -4.8510 11 14 3.1090 -0.9765 -6.3396 12 1 1.8752 -1.4571 -7.0120 13 1 3.8522 -0.0741 -7.2554 14 1 3.9647 -2.1375 -5.9867 15 6 2.0323 -0.7104 1.2305 16 7 2.5487 -0.1502 2.2958 17 6 2.8519 -1.1693 3.1313 18 6 3.4641 -1.0521 4.4781 19 6 3.7888 0.2018 4.9916 20 6 4.3539 0.3059 6.2462 21 6 4.6076 -0.8335 6.9901 22 35 5.3884 -0.6842 8.7060 23 6 4.2913 -2.0818 6.4824 24 6 3.7215 -2.1960 5.2309 25 7 2.5096 -2.2779 2.5280 26 8 2.0339 -2.0306 1.4400 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.2490 -1.6319 -1.1526 31 1 2.3514 1.6804 -5.7058 32 1 3.5950 1.0912 4.4102 33 1 4.6029 1.2776 6.6464 34 1 4.4908 -2.9678 7.0669 35 1 3.4754 -3.1705 4.8355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195567555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:28 Heat of formation + Delta-G solvation = 56.176542 kcal Electronic energy + Delta-G solvation = -22881.762680 eV Core-core repulsion = 19122.307327 eV Total energy + Delta-G solvation = -3759.455352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 365.016 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.55032 -39.65924 -37.88887 -35.96724 -34.87098 -33.01446 -32.50163 -31.76169 -31.39407 -29.78917 -29.47163 -26.28583 -24.77133 -24.64272 -23.10351 -22.42267 -21.04385 -19.65705 -18.19850 -18.06241 -17.42961 -16.73910 -15.87198 -15.68785 -15.46508 -14.96364 -14.51080 -14.16325 -13.96037 -13.86537 -13.62445 -13.52659 -12.66120 -12.52548 -12.23410 -12.08958 -11.88291 -11.83624 -11.77651 -11.30234 -11.17319 -11.13006 -11.06106 -10.89662 -10.70455 -10.57854 -10.31792 -10.16434 -9.49974 -8.95318 -8.88734 -7.90140 -7.80492 -6.31761 -4.76502 0.21036 0.87010 1.16354 1.23763 2.23132 2.80065 3.09061 3.16713 3.19870 3.27311 3.31210 3.77116 4.04199 4.36415 4.44715 4.45486 4.61565 4.80098 4.84661 5.03833 5.17475 5.33995 5.38515 5.52828 5.59904 5.70741 5.73195 5.78426 5.90766 5.97386 6.03906 6.22242 6.27356 6.53494 7.33894 7.62497 7.81078 8.08890 8.17907 8.91166 9.27546 10.42761 10.61460 Molecular weight = 365.02amu Principal moments of inertia in cm(-1) A = 0.026723 B = 0.001672 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.539275 B =16742.479030 C =16839.561406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.244 3.756 3 H 0.124 0.876 4 N -0.761 5.761 5 C 0.557 3.443 6 O -0.574 6.574 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.088 3.912 10 N -0.764 5.764 11 Si 0.910 3.090 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.207 3.793 16 N -0.474 5.474 17 C 0.200 3.800 18 C 0.003 3.997 19 C -0.070 4.070 20 C -0.092 4.092 21 C -0.078 4.078 22 Br -0.048 7.048 23 C -0.093 4.093 24 C -0.080 4.080 25 N -0.376 5.376 26 O 0.086 5.914 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.387 0.613 31 H 0.270 0.730 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -5.427 25.042 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.135 3.865 3 H 0.141 0.859 4 N -0.419 5.419 5 C 0.363 3.637 6 O -0.456 6.456 7 C -0.578 4.578 8 H 0.089 0.911 9 C -0.133 4.133 10 N -0.392 5.392 11 Si 0.734 3.266 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.188 1.188 15 C -0.015 4.015 16 N -0.207 5.207 17 C -0.070 4.070 18 C 0.001 3.999 19 C -0.090 4.090 20 C -0.112 4.112 21 C -0.158 4.158 22 Br 0.038 6.962 23 C -0.113 4.113 24 C -0.100 4.100 25 N -0.082 5.082 26 O 0.026 5.974 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.219 0.781 31 H 0.081 0.919 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.628 -4.766 26.107 26.785 hybrid contribution 0.119 -0.974 -1.223 1.568 sum 3.747 -5.740 24.884 25.811 Atomic orbital electron populations 1.22240 0.93406 1.02681 1.03414 1.19187 0.94200 0.96144 0.76934 0.85882 1.46402 1.73765 1.13305 1.08394 1.18268 0.78034 0.86375 0.81042 1.90624 1.55135 1.16058 1.83818 1.20832 1.45171 1.00302 0.91453 0.91102 1.25705 0.93027 0.94438 1.00106 1.70008 1.34343 1.08824 1.26010 0.86316 0.79118 0.80004 0.81123 1.19690 1.20402 1.18827 1.29494 0.93590 0.80632 0.97759 1.71999 1.17075 1.29729 1.01862 1.23811 1.01458 0.84449 0.97283 1.17468 0.99483 0.94562 0.88386 1.21296 0.95691 0.97303 0.94730 1.21095 0.98381 0.97942 0.93801 1.21986 1.04053 0.96360 0.93443 1.96751 1.81398 1.98710 1.19348 1.21023 0.98338 0.96346 0.95552 1.21201 0.97016 0.98447 0.93379 1.74852 1.15462 1.23105 0.94780 1.85277 1.57840 1.27347 1.26953 0.92158 0.92241 0.89393 0.78076 0.91899 0.83450 0.84083 0.84210 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.47 37.15 0.35 -2.10 16 2 C 0.24 4.32 3.12 -69.08 -0.22 4.11 16 3 H 0.12 2.41 7.58 -51.93 -0.39 2.02 16 4 N -0.76 -15.64 5.06 -56.35 -0.29 -15.92 16 5 C 0.56 14.66 7.71 -12.99 -0.10 14.56 16 6 O -0.57 -17.13 14.71 5.20 0.08 -17.06 16 7 C -0.54 -14.42 9.53 -35.64 -0.34 -14.76 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 9 C 0.09 2.33 5.49 -17.37 -0.10 2.24 16 10 N -0.76 -21.79 11.85 55.55 0.66 -21.13 16 11 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 15 C 0.21 3.35 7.24 -12.99 -0.09 3.25 16 16 N -0.47 -7.64 11.26 -9.87 -0.11 -7.75 16 17 C 0.20 2.98 7.80 -156.11 -1.22 1.77 16 18 C 0.00 0.04 5.88 -104.89 -0.62 -0.58 16 19 C -0.07 -0.74 9.70 -39.26 -0.38 -1.12 16 20 C -0.09 -0.83 9.77 -39.61 -0.39 -1.22 16 21 C -0.08 -0.70 6.23 -39.45 -0.25 -0.94 16 22 Br -0.05 -0.38 33.69 -68.01 -2.29 -2.67 16 23 C -0.09 -0.81 9.77 -39.61 -0.39 -1.20 16 24 C -0.08 -0.82 9.69 -39.26 -0.38 -1.20 16 25 N -0.38 -5.78 11.86 30.97 0.37 -5.42 16 26 O 0.09 1.35 11.11 18.03 0.20 1.55 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 30 H 0.39 7.14 8.42 -40.82 -0.34 6.79 16 31 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 32 H 0.15 1.55 7.88 -52.48 -0.41 1.13 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 1.35 7.87 -52.48 -0.41 0.94 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -31.40 340.26 -8.61 -40.01 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -3.22 Total: 6.14 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -4.11 Total: 2.81 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.63 Total: -50.21 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.28 Total: -15.50 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.29 Total: -2.67 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.40 -8.61 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195567555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.189 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds