Wall clock time and date at job start Tue Mar 31 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38288 * 119.92333 * 2 1 4 4 C 1.38100 * 120.07872 * 179.97438 * 3 2 1 5 5 C 1.38920 * 119.92219 * 0.02562 * 4 3 2 6 6 N 1.39668 * 120.07400 * 179.97438 * 5 4 3 7 7 C 1.46850 * 110.99974 * 124.18621 * 6 5 4 8 8 C 1.53037 * 109.52282 * 174.15785 * 7 6 5 9 9 C 1.53127 * 109.27649 * 59.17839 * 8 7 6 10 10 C 1.50699 * 109.51870 * 182.44039 * 9 8 7 11 11 O 1.21291 * 120.00231 * 119.68354 * 10 9 8 12 12 N 1.34776 * 120.00199 * 299.68102 * 10 9 8 13 13 C 1.39240 * 120.00117 * 176.69847 * 12 10 9 14 14 C 1.39484 * 119.82967 * 217.49492 * 13 12 10 15 15 C 1.36379 * 120.16422 * 179.76189 * 14 13 12 16 16 C 1.40865 * 119.83195 * 0.50359 * 15 14 13 17 17 C 1.41146 * 120.16836 * 179.72192 * 16 15 14 18 18 H 1.08000 * 120.00342 * 158.00027 * 17 16 15 19 19 C 1.39903 * 119.99962 * 338.00536 * 17 16 15 20 20 N 1.30869 * 120.00264 * 327.58480 * 19 17 16 21 21 Si 1.86802 * 120.00081 * 147.58062 * 19 17 16 22 22 H 1.48496 * 109.47452 * 94.98644 * 21 19 17 23 23 H 1.48502 * 109.47098 * 214.98982 * 21 19 17 24 24 H 1.48502 * 109.47010 * 334.98475 * 21 19 17 25 25 C 1.40874 * 119.67170 * 359.74511 * 16 15 14 26 26 C 1.36381 * 119.82727 * 0.02562 * 25 16 15 27 27 C 1.53118 * 109.16091 * 302.33994 * 9 8 7 28 28 C 1.46845 * 111.00269 * 359.97399 * 6 5 4 29 29 C 1.38916 * 119.84853 * 359.96982 * 5 4 3 30 30 C 1.38097 * 119.92405 * 0.02874 * 29 5 4 31 31 H 1.08999 * 109.47289 * 90.00397 * 1 2 3 32 32 H 1.08998 * 109.46906 * 209.99745 * 1 2 3 33 33 H 1.08996 * 109.47366 * 329.99799 * 1 2 3 34 34 H 1.07998 * 119.96091 * 359.71786 * 3 2 1 35 35 H 1.07994 * 120.04496 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.46038 * 294.17415 * 7 6 5 37 37 H 1.08994 * 109.46131 * 54.14417 * 7 6 5 38 38 H 1.08999 * 109.50472 * 299.23885 * 8 7 6 39 39 H 1.08997 * 109.53409 * 179.13780 * 8 7 6 40 40 H 1.08995 * 109.57411 * 62.28178 * 9 8 7 41 41 H 0.96995 * 120.00116 * 356.69422 * 12 10 9 42 42 H 1.07995 * 119.91924 * 0.02562 * 14 13 12 43 43 H 1.08001 * 120.08322 * 180.25188 * 15 14 13 44 44 H 0.97002 * 120.00754 * 180.02562 * 20 19 17 45 45 H 1.07994 * 120.08787 * 179.97438 * 25 16 15 46 46 H 1.07995 * 119.91796 * 179.97438 * 26 25 16 47 47 H 1.08994 * 109.50771 * 297.72184 * 27 9 8 48 48 H 1.09000 * 109.53422 * 177.61535 * 27 9 8 49 49 H 1.09001 * 109.45864 * 305.85247 * 28 6 5 50 50 H 1.08996 * 109.46326 * 65.83116 * 28 6 5 51 51 H 1.08000 * 120.03667 * 180.02562 * 29 5 4 52 52 H 1.08007 * 119.95919 * 180.02562 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2023 0.0005 5 6 4.2741 0.0001 0.0005 6 7 5.6707 0.0002 0.0005 7 6 6.1970 -0.7701 1.1346 8 6 7.7199 -0.8708 1.0217 9 6 8.3205 0.5378 1.0146 10 6 9.8150 0.4470 0.8434 11 8 10.3486 0.9680 -0.1132 12 7 10.5587 -0.2129 1.7532 13 6 11.9302 -0.3559 1.5597 14 6 12.5626 -1.5438 1.9267 15 6 13.9047 -1.6930 1.7357 16 6 14.6542 -0.6397 1.1762 17 6 16.0446 -0.7843 0.9809 18 1 16.5554 -0.1667 0.2569 19 6 16.7612 -1.7277 1.7251 20 7 16.3947 -2.0110 2.9491 21 14 18.2410 -2.5832 0.9717 22 1 19.4799 -1.8611 1.3577 23 1 18.3089 -3.9819 1.4659 24 1 18.1107 -2.5867 -0.5076 25 6 14.0093 0.5589 0.8129 26 6 12.6658 0.6917 1.0055 27 6 7.7199 1.3344 -0.1469 28 6 6.1970 1.3711 -0.0001 29 6 3.5779 -1.2020 0.0006 30 6 2.1970 -1.1984 0.0001 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6550 2.1327 -0.0046 35 1 4.1160 2.1386 0.0001 36 1 5.9342 -0.2697 2.0667 37 1 5.7653 -1.7708 1.1255 38 1 7.9832 -1.3833 0.0964 39 1 8.1122 -1.4294 1.8715 40 1 8.0914 1.0372 1.9559 41 1 10.1387 -0.5882 2.5428 42 1 11.9873 -2.3489 2.3591 43 1 14.3922 -2.6148 2.0166 44 1 16.8916 -2.6648 3.4652 45 1 14.5775 1.3709 0.3838 46 1 12.1700 1.6100 0.7280 47 1 7.9830 0.8565 -1.0905 48 1 8.1115 2.3515 -0.1324 49 1 5.7651 1.9255 -0.8334 50 1 5.9343 1.8614 0.9373 51 1 4.1161 -2.1384 0.0010 52 1 1.6551 -2.1327 0.0006 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219852826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:36 Heat of formation + Delta-G solvation = -8.320509 kcal Electronic energy + Delta-G solvation = -31062.836816 eV Core-core repulsion = 26990.370391 eV Total energy + Delta-G solvation = -4072.466424 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.189 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.73753 -40.91052 -39.34694 -38.53696 -36.20813 -35.26192 -34.69278 -32.58957 -32.03562 -31.49032 -31.32574 -30.78306 -27.93789 -26.70270 -25.36054 -24.93082 -23.48717 -22.70463 -22.67812 -21.98297 -21.16909 -20.55313 -19.32342 -18.72900 -18.14091 -17.75234 -17.02516 -16.61736 -16.35197 -16.10061 -15.83257 -15.77197 -15.51648 -15.24121 -14.95698 -14.74834 -14.53968 -14.45207 -14.38378 -14.20625 -14.12622 -13.96029 -13.78927 -13.31904 -13.27604 -13.00814 -12.85734 -12.75136 -12.68119 -12.49488 -12.33443 -12.27754 -12.17297 -11.92649 -11.90426 -11.73693 -11.58475 -11.39557 -11.11563 -10.68132 -10.46444 -10.38613 -9.82152 -9.48694 -9.01680 -8.73394 -8.61666 -6.24221 0.47052 0.52567 0.82366 1.12612 1.36693 1.42355 1.54275 1.80801 2.19292 2.37503 2.64061 2.64785 2.95574 3.55567 3.67037 3.68905 3.82845 3.98181 4.09523 4.10421 4.15023 4.21296 4.29400 4.36907 4.38952 4.47774 4.48405 4.55768 4.57512 4.68929 4.75999 4.77198 4.79138 4.89183 4.90285 4.91534 5.02972 5.09949 5.13940 5.15428 5.19988 5.23566 5.28400 5.30997 5.40493 5.45127 5.49034 5.63347 5.78319 5.87399 5.92568 6.02121 6.08725 6.09347 6.35083 6.40444 6.60685 6.76451 6.88232 6.98523 7.44971 8.19677 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.001492 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.612904 B =18766.686674 C =19244.981255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.179 4.179 5 C 0.096 3.904 6 N -0.502 5.502 7 C 0.066 3.934 8 C -0.104 4.104 9 C -0.094 4.094 10 C 0.502 3.498 11 O -0.578 6.578 12 N -0.642 5.642 13 C -0.008 4.008 14 C -0.100 4.100 15 C -0.189 4.189 16 C 0.083 3.917 17 C -0.507 4.507 18 H 0.074 0.926 19 C 0.054 3.946 20 N -0.798 5.798 21 Si 0.971 3.029 22 H -0.259 1.259 23 H -0.260 1.260 24 H -0.263 1.263 25 C -0.246 4.246 26 C -0.078 4.078 27 C -0.093 4.093 28 C 0.061 3.939 29 C -0.149 4.149 30 C -0.103 4.103 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.415 0.585 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.295 0.705 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.062 0.938 51 H 0.129 0.871 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.217 0.398 0.869 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.200 4.200 5 C -0.001 4.001 6 N -0.218 5.218 7 C -0.059 4.059 8 C -0.142 4.142 9 C -0.115 4.115 10 C 0.291 3.709 11 O -0.458 6.458 12 N -0.286 5.286 13 C -0.101 4.101 14 C -0.120 4.120 15 C -0.208 4.208 16 C 0.080 3.920 17 C -0.534 4.534 18 H 0.092 0.908 19 C -0.166 4.166 20 N -0.421 5.421 21 Si 0.791 3.209 22 H -0.184 1.184 23 H -0.184 1.184 24 H -0.187 1.187 25 C -0.266 4.266 26 C -0.097 4.097 27 C -0.132 4.132 28 C -0.066 4.066 29 C -0.169 4.169 30 C -0.121 4.121 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.252 0.748 42 H 0.142 0.858 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.118 0.882 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.106 0.894 50 H 0.080 0.920 51 H 0.147 0.853 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -28.572 0.407 0.024 28.575 hybrid contribution 0.900 0.057 0.465 1.015 sum -27.672 0.464 0.489 27.680 Atomic orbital electron populations 1.20766 0.89802 1.03351 1.02652 1.20168 0.97293 0.93035 1.02139 1.21151 0.93645 0.98413 0.98934 1.21496 0.95198 0.97515 1.05769 1.19100 0.87980 0.94294 0.98762 1.58992 1.04795 1.15424 1.42557 1.22225 0.93987 0.99105 0.90556 1.21614 0.94717 0.94186 1.03716 1.21380 0.88187 0.99596 1.02368 1.21369 0.90422 0.77711 0.81381 1.90677 1.74778 1.47500 1.32796 1.42900 1.05493 1.55825 1.24414 1.17138 0.83368 0.95662 1.13913 1.20453 0.94731 0.95293 1.01495 1.20644 0.93273 0.98872 1.08061 1.17909 0.93966 0.90732 0.89387 1.19704 0.93566 1.19606 1.20539 0.90838 1.26698 1.01601 0.94992 0.93305 1.69933 1.39005 1.25455 1.07707 0.85388 0.77283 0.78352 0.79926 1.18364 1.18367 1.18672 1.20722 0.94772 0.97992 1.13157 1.20408 0.93266 0.97148 0.98928 1.21357 0.93979 1.00374 0.97478 1.22237 0.93889 0.88113 1.02335 1.20950 0.94541 0.96909 1.04545 1.21151 0.93521 0.98462 0.99014 0.90964 0.90943 0.91013 0.84643 0.84790 0.92330 0.88713 0.92168 0.88398 0.86087 0.74817 0.85775 0.88359 0.89439 0.89194 0.88177 0.92684 0.90790 0.89377 0.92000 0.85329 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 71.24 0.71 -0.24 16 2 C -0.13 -1.73 5.88 -19.84 -0.12 -1.85 16 3 C -0.10 -1.48 9.69 22.25 0.22 -1.27 16 4 C -0.18 -2.90 8.82 22.40 0.20 -2.70 16 5 C 0.10 1.72 5.64 38.22 0.22 1.94 16 6 N -0.50 -9.16 4.70 -695.38 -3.27 -12.43 16 7 C 0.07 1.00 5.26 86.33 0.45 1.45 16 8 C -0.10 -1.85 5.26 30.65 0.16 -1.69 16 9 C -0.09 -2.01 2.59 -11.46 -0.03 -2.04 16 10 C 0.50 16.45 6.97 87.66 0.61 17.06 16 11 O -0.58 -24.81 13.59 -3.06 -0.04 -24.85 16 12 N -0.64 -21.11 5.19 -303.10 -1.57 -22.68 16 13 C -0.01 -0.34 6.25 38.57 0.24 -0.09 16 14 C -0.10 -4.47 9.90 22.14 0.22 -4.25 16 15 C -0.19 -9.81 8.74 22.48 0.20 -9.61 16 16 C 0.08 4.62 5.57 -21.28 -0.12 4.50 16 17 C -0.51 -27.97 8.94 23.39 0.21 -27.76 16 18 H 0.07 4.00 8.02 -2.91 -0.02 3.98 16 19 C 0.05 2.69 4.77 85.24 0.41 3.09 16 20 N -0.80 -40.57 11.78 21.82 0.26 -40.32 16 21 Si 0.97 37.59 29.66 68.60 2.03 39.62 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 25 C -0.25 -13.25 9.74 22.48 0.22 -13.03 16 26 C -0.08 -3.85 8.59 22.14 0.19 -3.66 16 27 C -0.09 -2.09 4.68 30.65 0.14 -1.94 16 28 C 0.06 1.04 4.15 86.33 0.36 1.40 16 29 C -0.15 -2.46 9.16 22.40 0.21 -2.26 16 30 C -0.10 -1.48 9.69 22.25 0.22 -1.26 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 33 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 34 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.13 1.85 5.81 -2.91 -0.02 1.84 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 1.26 6.70 -2.39 -0.02 1.24 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.36 7.75 -2.39 -0.02 1.34 16 40 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.41 10.05 8.41 -92.71 -0.78 9.27 16 42 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 43 H 0.10 5.19 6.52 -2.91 -0.02 5.17 16 44 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 45 H 0.09 4.71 8.06 -2.91 -0.02 4.68 16 46 H 0.10 4.93 6.45 -2.91 -0.02 4.92 16 47 H 0.05 1.53 8.04 -2.39 -0.02 1.51 16 48 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.09 1.46 6.98 -2.39 -0.02 1.44 16 50 H 0.06 0.88 7.73 -2.39 -0.02 0.86 16 51 H 0.13 1.90 7.15 -2.91 -0.02 1.88 16 52 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -69.30 413.51 2.47 -66.83 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: 0.15 Total: 38.06 kcal Atomic # 6 Polarization: -49.13 SS G_CDS: 4.91 Total: -44.23 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -4.58 Total: -75.43 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.04 Total: -24.85 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -69.30 2.47 -66.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219852826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.505 kcal (2) G-P(sol) polarization free energy of solvation -69.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds