Wall clock time and date at job start Tue Mar 31 2020 07:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46940 * 2 1 4 4 O 1.42903 * 109.47206 * 240.00098 * 2 1 3 5 5 C 1.35893 * 117.00137 * 83.79451 * 4 2 1 6 6 C 1.38481 * 119.78559 * 354.56235 * 5 4 2 7 7 C 1.38135 * 119.70482 * 179.60875 * 6 5 4 8 8 C 1.38001 * 119.83356 * 0.69284 * 7 6 5 9 9 C 1.38910 * 120.66770 * 359.73168 * 8 7 6 10 10 C 1.37622 * 119.71054 * 359.81059 * 9 8 7 11 11 C 1.50622 * 122.58711 * 180.44854 * 10 9 8 12 12 C 1.52740 * 110.59150 * 342.30070 * 11 10 9 13 13 C 1.53329 * 108.37213 * 51.07368 * 12 11 10 14 14 C 1.50640 * 117.73667 * 179.64155 * 9 8 7 15 15 C 1.50696 * 109.47309 * 119.99726 * 2 1 3 16 16 O 1.21277 * 120.00123 * 119.99996 * 15 2 1 17 17 N 1.34782 * 120.00105 * 300.00638 * 15 2 1 18 18 C 1.39235 * 119.99843 * 185.18134 * 17 15 2 19 19 C 1.39485 * 119.83534 * 323.11920 * 18 17 15 20 20 C 1.36367 * 120.16844 * 180.29978 * 19 18 17 21 21 C 1.40865 * 119.83036 * 359.48192 * 20 19 18 22 22 C 1.41160 * 120.16553 * 180.24665 * 21 20 19 23 23 H 1.07995 * 119.99906 * 198.34549 * 22 21 20 24 24 C 1.39909 * 119.99663 * 18.34659 * 22 21 20 25 25 N 1.30868 * 119.99924 * 30.24512 * 24 22 21 26 26 Si 1.86797 * 119.99738 * 210.23999 * 24 22 21 27 27 H 1.48507 * 109.46881 * 94.99716 * 26 24 22 28 28 H 1.48495 * 109.47291 * 214.99432 * 26 24 22 29 29 H 1.48496 * 109.47305 * 335.00301 * 26 24 22 30 30 C 1.40863 * 119.67121 * 0.51973 * 21 20 19 31 31 C 1.36375 * 119.83271 * 359.73124 * 30 21 20 32 32 H 1.09006 * 109.46940 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47243 * 299.99746 * 1 2 3 34 34 H 1.09000 * 109.47202 * 60.00053 * 1 2 3 35 35 H 1.07991 * 120.14926 * 359.90963 * 6 5 4 36 36 H 1.08000 * 120.08374 * 180.40039 * 7 6 5 37 37 H 1.08004 * 119.66994 * 179.74232 * 8 7 6 38 38 H 1.08997 * 109.25757 * 102.59237 * 11 10 9 39 39 H 1.09004 * 109.24981 * 222.02436 * 11 10 9 40 40 H 1.08997 * 109.68406 * 170.79481 * 12 11 10 41 41 H 1.09000 * 109.68323 * 291.35511 * 12 11 10 42 42 H 1.08996 * 109.68544 * 49.85043 * 13 12 11 43 43 H 1.09000 * 109.67848 * 170.40585 * 13 12 11 44 44 H 1.08995 * 109.25145 * 42.16584 * 14 9 8 45 45 H 1.09000 * 109.25792 * 282.73285 * 14 9 8 46 46 H 0.97001 * 119.99920 * 5.17580 * 17 15 2 47 47 H 1.07998 * 119.91264 * 0.03296 * 19 18 17 48 48 H 1.08006 * 120.08271 * 179.70450 * 20 19 18 49 49 H 0.97002 * 120.00036 * 179.97438 * 25 24 22 50 50 H 1.08006 * 120.08743 * 179.70749 * 30 21 20 51 51 H 1.07993 * 119.92308 * 180.02562 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0886 0.0562 -2.3102 6 6 1.6128 1.3565 -2.3320 7 6 1.7046 2.0996 -3.4929 8 6 2.2562 1.5374 -4.6261 9 6 2.7267 0.2305 -4.6115 10 6 2.6460 -0.5107 -3.4547 11 6 3.1448 -1.9290 -3.3635 12 6 3.3143 -2.5295 -4.7576 13 6 4.1508 -1.5612 -5.6024 14 6 3.3084 -0.3195 -5.8876 15 6 2.0323 -0.7103 1.2304 16 8 2.7296 -1.6964 1.1192 17 7 1.7066 -0.2499 2.4546 18 6 2.2572 -0.8397 3.5894 19 6 2.4664 -2.2183 3.6227 20 6 2.9995 -2.8039 4.7329 21 6 3.3492 -2.0113 5.8438 22 6 3.9063 -2.6094 6.9946 23 1 3.9007 -2.0790 7.9353 24 6 4.4657 -3.8894 6.9166 25 7 5.0144 -4.2968 5.8005 26 14 4.4296 -5.0169 8.4055 27 1 3.2489 -5.9135 8.3188 28 1 5.6696 -5.8331 8.4386 29 1 4.3411 -4.2004 9.6426 30 6 3.1348 -0.6197 5.8026 31 6 2.5960 -0.0490 4.6873 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.1763 1.7893 -1.4442 36 1 1.3413 3.1164 -3.5149 37 1 2.3229 2.1194 -5.5334 38 1 4.1052 -1.9398 -2.8482 39 1 2.4283 -2.5264 -2.7996 40 1 3.8261 -3.4890 -4.6843 41 1 2.3366 -2.6686 -5.2188 42 1 5.0491 -1.2775 -5.0542 43 1 4.4290 -2.0397 -6.5415 44 1 3.9351 0.4406 -6.3538 45 1 2.4983 -0.5833 -6.5676 46 1 1.0888 0.4924 2.5450 47 1 2.2016 -2.8241 2.7688 48 1 3.1565 -3.8722 4.7591 49 1 5.4026 -5.1841 5.7464 50 1 3.3960 -0.0063 6.6523 51 1 2.4314 1.0178 4.6541 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222866376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:47 Heat of formation + Delta-G solvation = -41.563696 kcal Electronic energy + Delta-G solvation = -31849.087723 eV Core-core repulsion = 27677.461104 eV Total energy + Delta-G solvation = -4171.626619 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.178 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.91572 -39.73284 -38.32436 -37.07541 -35.88303 -34.51271 -33.30293 -32.50850 -31.34923 -30.32043 -29.49634 -28.92123 -28.52654 -25.49386 -24.37617 -23.80152 -23.00524 -22.08095 -21.37037 -20.92392 -19.81650 -19.17040 -18.08692 -17.50333 -17.29525 -16.12698 -16.00534 -15.87739 -15.60767 -15.24242 -15.16441 -14.55618 -14.27652 -14.06719 -13.95394 -13.78133 -13.67820 -13.40660 -13.08208 -12.83369 -12.73837 -12.69244 -12.49766 -12.22232 -12.06153 -11.97897 -11.91117 -11.77869 -11.49666 -11.37210 -11.16601 -11.14288 -10.97358 -10.88633 -10.63540 -10.54859 -10.40544 -10.03211 -9.84275 -9.40730 -9.11126 -8.75349 -8.64597 -8.18276 -7.54418 -7.18066 -6.88081 -4.29306 1.16153 1.29743 2.52022 2.77732 2.93963 3.05047 3.08745 3.09786 3.32128 3.56944 3.84115 3.88199 4.40841 4.50628 4.52993 4.57988 4.73521 4.78181 4.80754 4.81915 4.96172 4.98343 5.09838 5.17053 5.28846 5.36027 5.42779 5.45562 5.51363 5.62015 5.66971 5.68363 5.75737 5.85376 5.88108 5.94197 6.08303 6.12942 6.19299 6.25508 6.33829 6.39627 6.50251 6.63034 6.77445 6.95262 7.02581 7.09312 7.26704 7.31324 7.56547 7.64981 7.93181 8.02712 8.17846 8.26747 8.57628 8.71896 8.83107 8.98244 10.03090 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.001944 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.541914 B =14399.221771 C =15740.927348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 H 0.095 0.905 4 O -0.279 6.279 5 C 0.134 3.866 6 C -0.218 4.218 7 C -0.083 4.083 8 C -0.162 4.162 9 C -0.043 4.043 10 C -0.101 4.101 11 C -0.074 4.074 12 C -0.119 4.119 13 C -0.122 4.122 14 C -0.078 4.078 15 C 0.501 3.499 16 O -0.505 6.505 17 N -0.644 5.644 18 C -0.024 4.024 19 C -0.075 4.075 20 C -0.175 4.175 21 C 0.109 3.891 22 C -0.460 4.460 23 H 0.082 0.918 24 C 0.082 3.918 25 N -0.765 5.765 26 Si 0.902 3.098 27 H -0.266 1.266 28 H -0.277 1.277 29 H -0.260 1.260 30 C -0.225 4.225 31 C -0.093 4.093 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.393 0.607 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.284 0.716 50 H 0.095 0.905 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 9.194 -20.012 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.008 3.992 3 H 0.113 0.887 4 O -0.191 6.191 5 C 0.088 3.912 6 C -0.237 4.237 7 C -0.101 4.101 8 C -0.181 4.181 9 C -0.043 4.043 10 C -0.101 4.101 11 C -0.111 4.111 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.115 4.115 15 C 0.285 3.715 16 O -0.379 6.379 17 N -0.289 5.289 18 C -0.116 4.116 19 C -0.095 4.095 20 C -0.194 4.194 21 C 0.107 3.893 22 C -0.487 4.487 23 H 0.100 0.900 24 C -0.140 4.140 25 N -0.387 5.387 26 Si 0.726 3.274 27 H -0.191 1.191 28 H -0.202 1.202 29 H -0.183 1.183 30 C -0.245 4.245 31 C -0.113 4.113 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.227 0.773 47 H 0.122 0.878 48 H 0.131 0.869 49 H 0.095 0.905 50 H 0.113 0.887 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.381 8.082 -20.197 22.671 hybrid contribution -0.360 0.292 0.781 0.908 sum -6.741 8.373 -19.416 22.193 Atomic orbital electron populations 1.22363 0.93060 1.04475 1.03531 1.22236 0.95393 0.97004 0.84534 0.88705 1.86216 1.80536 1.37221 1.15138 1.19079 0.95220 0.90334 0.86537 1.21222 1.07646 0.94555 1.00240 1.20795 0.97775 0.99208 0.92322 1.21004 1.03088 0.95265 0.98719 1.19412 0.97368 0.93396 0.94140 1.18956 1.02851 0.97403 0.90919 1.20293 1.02069 0.91479 0.97278 1.21559 1.00253 0.98444 0.95376 1.21570 0.98612 0.95575 1.00142 1.20472 0.99225 0.97746 0.94085 1.19943 0.81753 0.85927 0.83853 1.90748 1.36615 1.24652 1.85858 1.42751 1.45868 1.36005 1.04245 1.17049 1.14728 0.92182 0.87633 1.20465 0.99119 0.92399 0.97506 1.20849 1.04808 0.99586 0.94197 1.17636 0.88665 0.90715 0.92329 1.19576 1.32938 0.99644 0.96572 0.90016 1.26005 0.92062 0.98691 0.97202 1.69948 1.22017 1.18903 1.27857 0.86403 0.78662 0.80099 0.82283 1.19079 1.20236 1.18333 1.20445 1.11082 0.94752 0.98178 1.20042 1.00681 0.96416 0.94189 0.90584 0.90287 0.90850 0.85283 0.85939 0.86245 0.90468 0.90211 0.91323 0.91798 0.91463 0.91498 0.90671 0.90516 0.77325 0.87805 0.86898 0.90454 0.88672 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.03 37.16 0.34 -1.47 16 2 C 0.07 0.92 2.66 -27.89 -0.07 0.85 16 3 H 0.10 1.07 6.37 -51.93 -0.33 0.74 16 4 O -0.28 -4.30 8.37 -39.31 -0.33 -4.63 16 5 C 0.13 1.79 6.55 -39.08 -0.26 1.54 16 6 C -0.22 -2.40 8.17 -39.53 -0.32 -2.72 16 7 C -0.08 -0.80 10.04 -39.71 -0.40 -1.19 16 8 C -0.16 -1.56 9.60 -39.42 -0.38 -1.93 16 9 C -0.04 -0.46 5.74 -104.63 -0.60 -1.06 16 10 C -0.10 -1.27 5.75 -104.47 -0.60 -1.87 16 11 C -0.07 -0.92 5.27 -28.05 -0.15 -1.06 16 12 C -0.12 -1.12 5.98 -26.69 -0.16 -1.28 16 13 C -0.12 -1.00 5.98 -26.70 -0.16 -1.16 16 14 C -0.08 -0.63 5.67 -28.05 -0.16 -0.79 16 15 C 0.50 9.12 7.06 -10.99 -0.08 9.04 16 16 O -0.50 -11.78 14.00 -14.35 -0.20 -11.98 16 17 N -0.64 -11.22 5.22 -9.74 -0.05 -11.27 16 18 C -0.02 -0.54 6.28 -83.57 -0.52 -1.07 16 19 C -0.07 -1.89 8.61 -39.79 -0.34 -2.23 16 20 C -0.17 -4.69 8.73 -39.26 -0.34 -5.04 16 21 C 0.11 2.92 5.61 -106.80 -0.60 2.32 16 22 C -0.46 -12.09 8.97 -37.85 -0.34 -12.43 16 23 H 0.08 2.05 8.00 -52.49 -0.42 1.63 16 24 C 0.08 2.06 4.88 -17.34 -0.08 1.98 16 25 N -0.76 -19.94 11.37 55.55 0.63 -19.31 16 26 Si 0.90 18.35 29.65 -169.99 -5.04 13.31 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 29 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 30 C -0.22 -5.43 9.74 -39.26 -0.38 -5.81 16 31 C -0.09 -2.03 9.90 -39.79 -0.39 -2.43 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.64 7.46 -51.93 -0.39 0.25 16 34 H 0.07 0.64 6.76 -51.93 -0.35 0.29 16 35 H 0.13 1.18 5.35 -52.49 -0.28 0.90 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.87 8.05 -52.48 -0.42 0.45 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.08 7.76 -51.93 -0.40 0.68 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.39 5.11 8.10 -40.82 -0.33 4.78 16 47 H 0.10 2.64 6.32 -52.49 -0.33 2.31 16 48 H 0.11 3.13 6.19 -52.48 -0.32 2.81 16 49 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 50 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 51 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 408.03 15.07 6.15 6.15 Total: -1.00 -31.84 408.03 -12.21 -44.05 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.36 Total: 11.48 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -6.01 Total: -27.81 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.58 Total: -30.58 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.53 Total: -16.61 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.04 Total: 13.31 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.84 -12.21 -44.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222866376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.488 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds